Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0035701.1

Orthogroup ID

OG0005385

Physical Location & Seq

Genomic Coordinates Forward (+)

673 .. 1938

Gene Structure 1266 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0035701.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

atgttggatggtttgttgacgaaaagccaacacaagagtctgaaatctcttttccgccggagcagcaccgaagatgactccccttcctcttcctctgccgccaattctcccaaacccattcctcacctctctcctttcgccaattccgtcgtctctcgctgttccaagattcttcggatccctactgaagacttacagcatcattttgacacacagctacctgaaagtgtaaaggaacttctgacttatgctaggaactttttggaattttgctcctaccaagcactccatgtagtgagtagtcgcccggattatttgagtgataaggactttcgtcatatgacctttgacatgatgcttgcatgggaatcaccttgtgttgagaatatacaactacacaaagaaaccgcttctagcagtaaccaagaagtagaggatgaagatggatggttggtttcatattcttctgtcattgcccacaaacgactaatagtggttctttgctttcgccctgcaggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF639

Protein Analysis

173

Amino Acids

19.6

Weight (kDa)

6.04

Isoelectric Point (pI)

67.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005385)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23390
fragaria_vesca	FvH4_4g37320 FvH4_4g37320 FvH4_4g37320 FvH4_4g37320 FvH4_4g37320 FvH4_4g37320
malus_domestica	MD13G1001200.v1.1
prunus_persica	Prupe.1G351500_v2.0.a1 Prupe.1G351500_v2.0.a1 Prupe.1G351500_v2.0.a1 Prupe.1G351500_v2.0.a1 Prupe.1G351500_v2.0.a1 Prupe.1G351500_v2.0.a1
pyrus_communis	pycom13g00090
rosa_chinensis	RchiOBHm_Chr4g0447161 RchiOBHm_Chr4g0447171
rosa_laevigata	RLG00000005599
rosa_multiflora	Rmu_sc0035701.1_g000002 Rmu_ssc0000178.1_g000002 Rmu_ssc0000224.1_g000002
rosa_roxburghii	Rroxscaffold_5G00387550
rosa_rugosa	Rorug04G0378700 Rorug04G0378800
rosa_samantha	Rh4AG439900 Rh4BG449000 Rh4CG466000 Rh4DG447400
rosa_wichuraiana	Rw4G037640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	506
AciI	CCGC	3 cut(s)	55, 99, 408
AclWI	GGATC	2 cut(s)	172, 185
AcsI	RAATTY	1 cut(s)	266
AcuI	CTGAAG	1 cut(s)	207
AdeI	CACNNNGTG	1 cut(s)	377
AluBI	AGCT	1 cut(s)	217
AluI	AGCT	1 cut(s)	217
Alw26I	GTCTC	1 cut(s)	157
AlwI	GGATC	2 cut(s)	172, 185
ApeKI	GCWGC	1 cut(s)	63
ApoI	RAATTY	1 cut(s)	266
AsuC2I	CCSGG	1 cut(s)	308
AsuHPI	GGTGA	2 cut(s)	116, 363
BamHI	GGATCC	1 cut(s)	177
BarI	GAAGNNNNNNTAC	2 cut(s)	222, 254
BbsI	GAAGAC	1 cut(s)	195
BbvI	GCAGC	1 cut(s)	75
BccI	CCATC	3 cut(s)	2, 437, 441
BcnI	CCSGG	1 cut(s)	308
BcoDI	GTCTC	1 cut(s)	157
BfaI	CTAG	2 cut(s)	252, 414
BfmI	CTRYAG	1 cut(s)	513
BfuAI	ACCTGC	1 cut(s)	506
BisI	GCNGC	2 cut(s)	64, 99
BlsI	GCNGC	2 cut(s)	65, 100
Bme1390I	CCNGG	1 cut(s)	308
BmiI	GGNNCC	1 cut(s)	179
BmrFI	CCNGG	1 cut(s)	308
BmsI	GCATC	2 cut(s)	208, 345
BoxI	GACNNNNGTC	1 cut(s)	333
BpiI	GAAGAC	1 cut(s)	195
BpuMI	CCSGG	1 cut(s)	308
Bse3DI	GCAATG	1 cut(s)	471
BseGI	GGATG	3 cut(s)	13, 442, 452
BseMI	GCAATG	1 cut(s)	471
BseXI	GCAGC	1 cut(s)	75
BsiSI	CCGG	2 cut(s)	58, 308
BsmAI	GTCTC	1 cut(s)	157
BsmBI	CGTCTC	1 cut(s)	157
Bsp143I	GATC	1 cut(s)	177
BspACI	CCGC	3 cut(s)	55, 99, 408
BspLI	GGNNCC	1 cut(s)	179
BspMAI	CTGCAG	1 cut(s)	517
BspMI	ACCTGC	1 cut(s)	506
BspPI	GGATC	2 cut(s)	172, 185
BsrDI	GCAATG	1 cut(s)	471
BssMI	GATC	1 cut(s)	177
Bst6I	CTCTTC	1 cut(s)	94
BstC8I	GCNNGC	1 cut(s)	360
BstF5I	GGATG	3 cut(s)	13, 442, 452
BstKTI	GATC	1 cut(s)	180
BstMAI	GTCTC	1 cut(s)	157
BstMBI	GATC	1 cut(s)	177
BstMWI	GCNNNNNNNGC	1 cut(s)	63
BstPAI	GACNNNNGTC	1 cut(s)	333
BstSCI	CCNGG	1 cut(s)	306
BstSFI	CTRYAG	1 cut(s)	513
BstV1I	GCAGC	1 cut(s)	75
BstV2I	GAAGAC	1 cut(s)	195
BstX2I	RGATCY	1 cut(s)	177
BstYI	RGATCY	1 cut(s)	177
BtsCI	GGATG	3 cut(s)	13, 442, 452
BveI	ACCTGC	1 cut(s)	506
Cac8I	GCNNGC	1 cut(s)	360
CviAII	CATG	3 cut(s)	290, 352, 363
CviJI	RGCY	2 cut(s)	27, 217
CviKI_1	RGCY	2 cut(s)	27, 217
DpnI	GATC	1 cut(s)	179
DpnII	GATC	1 cut(s)	177
DraIII	CACNNNGTG	1 cut(s)	377
Eam1104I	CTCTTC	1 cut(s)	94
EarI	CTCTTC	1 cut(s)	94
EciI	GGCGGA	1 cut(s)	44
Eco57I	CTGAAG	1 cut(s)	207
Esp3I	CGTCTC	1 cut(s)	157
FaeI	CATG	3 cut(s)	293, 355, 366
FaiI	YATR	8 cut(s)	249, 291, 339, 341, 353, 364, 389, 460
FatI	CATG	3 cut(s)	289, 351, 362
FauNDI	CATATG	1 cut(s)	339
Fnu4HI	GCNGC	2 cut(s)	64, 99
FokI	GGATG	3 cut(s)	20, 449, 459
Fsp4HI	GCNGC	2 cut(s)	64, 99
FspBI	CTAG	2 cut(s)	252, 414
GluI	GCNGC	2 cut(s)	64, 99
HapII	CCGG	2 cut(s)	58, 308
Hin1II	CATG	3 cut(s)	293, 355, 366
HincII	GTYRAC	1 cut(s)	18
HindII	GTYRAC	1 cut(s)	18
HinfI	GANTC	4 cut(s)	37, 77, 169, 368
HpaII	CCGG	2 cut(s)	58, 308
HphI	GGTGA	2 cut(s)	116, 363
Hpy166II	GTNNAC	1 cut(s)	18
Hpy188I	TCNGA	3 cut(s)	42, 177, 243
Hpy8I	GTNNAC	1 cut(s)	18
Hpy99I	CGWCG	1 cut(s)	152
HpyAV	CCTTC	1 cut(s)	93
HpyCH4V	TGCA	2 cut(s)	362, 515
HpyF10VI	GCNNNNNNNGC	1 cut(s)	63
Hsp92II	CATG	3 cut(s)	293, 355, 366
Kzo9I	GATC	1 cut(s)	177
LmnI	GCTCC	2 cut(s)	60, 278
LpnPI	CCDG	4 cut(s)	71, 234, 321, 501
Lsp1109I	GCAGC	1 cut(s)	75
LweI	GCATC	2 cut(s)	208, 345
MaeI	CTAG	2 cut(s)	252, 414
MaeIII	GTNAC	1 cut(s)	419
MalI	GATC	1 cut(s)	179
MboI	GATC	1 cut(s)	177
MboII	GAAGA	6 cut(s)	81, 83, 164, 200, 452, 456
MflI	RGATCY	1 cut(s)	177
MluCI	AATT	3 cut(s)	103, 142, 266
MlyI	GAGTC	2 cut(s)	46, 71
MnlI	CCTC	5 cut(s)	97, 103, 132, 137, 427
MspI	CCGG	2 cut(s)	58, 308
MspR9I	CCNGG	1 cut(s)	308
MwoI	GCNNNNNNNGC	1 cut(s)	63
NciI	CCSGG	1 cut(s)	308
NdeI	CATATG	1 cut(s)	339
NdeII	GATC	1 cut(s)	177
NlaIII	CATG	3 cut(s)	293, 355, 366
NlaIV	GGNNCC	1 cut(s)	179
PcsI	WCGNNNNNNNCGW	1 cut(s)	144
PfeI	GAWTC	2 cut(s)	169, 368
PkrI	GCNGC	2 cut(s)	65, 100
PleI	GAGTC	2 cut(s)	45, 71
PpsI	GAGTC	2 cut(s)	45, 71
PshAI	GACNNNNGTC	1 cut(s)	333
PspN4I	GGNNCC	1 cut(s)	179
PstI	CTGCAG	1 cut(s)	517
PsuI	RGATCY	1 cut(s)	177
SatI	GCNGC	2 cut(s)	64, 99
Sau3AI	GATC	1 cut(s)	177
SbfI	CCTGCAGG	1 cut(s)	517
SchI	GAGTC	2 cut(s)	46, 71
ScrFI	CCNGG	1 cut(s)	308
SdaI	CCTGCAGG	1 cut(s)	517
SetI	ASST	6 cut(s)	129, 219, 223, 347, 376, 520
SfaNI	GCATC	2 cut(s)	208, 345
SfcI	CTRYAG	1 cut(s)	513
Sse8387I	CCTGCAGG	1 cut(s)	517
Sse9I	AATT	3 cut(s)	103, 142, 266
SsiI	CCGC	3 cut(s)	55, 99, 408
SspMI	CTAG	2 cut(s)	252, 414
StyD4I	CCNGG	1 cut(s)	306
TasI	AATT	3 cut(s)	103, 142, 266
TauI	GCSGC	1 cut(s)	101
TfiI	GAWTC	2 cut(s)	169, 368
TseI	GCWGC	1 cut(s)	63
TspDTI	ATGAA	2 cut(s)	447, 453
TspGWI	ACGGA	1 cut(s)	136
XapI	RAATTY	1 cut(s)	266
XspI	CTAG	2 cut(s)	252, 414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.