Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000178.1

Orthogroup ID

OG0005385

Physical Location & Seq

Genomic Coordinates Forward (+)

669 .. 4516

Gene Structure 3848 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000178.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1686 bp

atggagaacttcaaaatgttggatggtttgttgacgaaaagccaacacaagagtctgaaatctcttttccgccggagcagcacggaagatgactccccttcctcttcctctgccgccaattctcccaaacccattcctcacctctctcctttcgccaattccgtcgtctctcgctgttccaagattcttcggatccctactgaagacttacagcatcattttgacacacagctacctgaaagtgtaaaggaacttctgacttatgctaggaactttttggaattttgctcctaccaagcactccatgtagtgagtagtcgcccggattatttgagtgataaggactttcgtcatatgacctttgacatgatgcttgcatgggaatcaccttgtgttgagaatatacaactacacaaagaaaccgcttctagcagtaaccaagaagtagaggatgaagatggttggtcgcttttttattctagttctaccaatatggctgtccaggttgatgacaaaaaaactgttgggcccgaagcctttgcacgaatagcacctggttgtgctgctgttgcagatataataactgtccacaacctctatgatgcactcacaaccacatcaggccatcatcgacttcatttccttaaagtaccaccctgcagggttattaaggcttccaaaagtacattagcttcttccattggaaatcttcagctcgttgagggagaaatcatccttgatgttgatggtacagttcccactcaaccagtgctcaaacatattggcaggtctatgtggcctggacggctgtcactgaccaatagtgcgctgtattttgaatcattgggagttggtttgtatgacaaagctgttagatatgatctggcaacagatatgaagcaggtcataaaaccagaattgactggaccgttgggtactcgtcttttcgataaagccatcatatacaaatcgacgtctgtagacgagccgatccatttggagtttcctgagttcaaaggcaattctcgccgagattattggttggatatatgtcttgaaatcttgcgtgctcacaggttcattcagaaaaacaaccttaaagcaattcagaaatcagaagtactagcaagggctattttaggcatctggcgatatcgtgcagttcgagaagccttccacttcttttcatcccattataaaaccttacttgctttcaaccttgctgaatgtcttccgggaggagactcgattttgaaaactttgtctagtcgattggttattttgaattccagtgcttcccaacatgatgtttctccacattcaaaacggcaggcgaaattgtctccaatttcacttatagcactaactcagcttggattcatattgcaaaaggaagtcaaccttgatggagaggtaataatagttggagaggtttgtgctggcgaaattaaccccttgcaaatggcagtgaaacagtcattattggacactggaagggctgaagctgcacaggcaactgtggaccaagtgaaagtggatgggattgatacaaatgttgcaataatgaaggagttactgtttccggttattgaattagccaattgtgctcaacgtttggcatcatgggaaaagccttacaagtcaacaatttttctggtgttgacctgcttctttatagtaaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF639

Protein Analysis

561

Amino Acids

62.65

Weight (kDa)

6.81

Isoelectric Point (pI)

43.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005385)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23390
fragaria_vesca	FvH4_4g37320 FvH4_4g37320 FvH4_4g37320 FvH4_4g37320 FvH4_4g37320 FvH4_4g37320
malus_domestica	MD13G1001200.v1.1
prunus_persica	Prupe.1G351500_v2.0.a1 Prupe.1G351500_v2.0.a1 Prupe.1G351500_v2.0.a1 Prupe.1G351500_v2.0.a1 Prupe.1G351500_v2.0.a1 Prupe.1G351500_v2.0.a1
pyrus_communis	pycom13g00090
rosa_chinensis	RchiOBHm_Chr4g0447161 RchiOBHm_Chr4g0447171
rosa_laevigata	RLG00000005599
rosa_multiflora	Rmu_sc0035701.1_g000002 Rmu_ssc0000178.1_g000002 Rmu_ssc0000224.1_g000002
rosa_roxburghii	Rroxscaffold_5G00387550
rosa_rugosa	Rorug04G0378700 Rorug04G0378800
rosa_samantha	Rh4AG439900 Rh4BG449000 Rh4CG466000 Rh4DG447400
rosa_wichuraiana	Rw4G037640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1197
AatII	GACGTC	1 cut(s)	977
Acc36I	ACCTGC	3 cut(s)	777, 892, 1673
AccI	GTMKAC	1 cut(s)	981
AciI	CCGC	3 cut(s)	70, 114, 423
AclI	AACGTT	1 cut(s)	1612
AclWI	GGATC	3 cut(s)	187, 200, 985
AcsI	RAATTY	2 cut(s)	281, 1285
AcuI	CTGAAG	3 cut(s)	222, 695, 1521
AcyI	GRCGYC	1 cut(s)	974
AdeI	CACNNNGTG	1 cut(s)	392
AfaI	GTAC	5 cut(s)	651, 685, 751, 937, 1122
AgsI	TTSAA	9 cut(s)	13, 839, 1015, 1058, 1216, 1255, 1285, 1323, 1592
AjnI	CCWGG	3 cut(s)	501, 553, 799
AluBI	AGCT	6 cut(s)	232, 692, 715, 869, 1372, 1505
AluI	AGCT	6 cut(s)	232, 692, 715, 869, 1372, 1505
Alw21I	GWGCWC	3 cut(s)	774, 1072, 1609
Alw26I	GTCTC	3 cut(s)	172, 1236, 1347
AlwI	GGATC	3 cut(s)	187, 200, 985
AoxI	GGCC	3 cut(s)	527, 622, 797
ApaI	GGGCCC	1 cut(s)	531
ApeKI	GCWGC	3 cut(s)	78, 563, 1505
ApoI	RAATTY	2 cut(s)	281, 1285
Asp700I	GAANNNNTTC	1 cut(s)	1230
AspLEI	GCGC	1 cut(s)	829
AspS9I	GGNCC	4 cut(s)	527, 528, 926, 1522
AsuC2I	CCSGG	2 cut(s)	323, 1236
AsuHPI	GGTGA	2 cut(s)	131, 378
AvaII	GGWCC	2 cut(s)	926, 1522
BaeGI	GKGCMC	1 cut(s)	531
BaeI	ACNNNNGTAYC	2 cut(s)	1539, 1572
BamHI	GGATCC	1 cut(s)	192
BanII	GRGCYC	1 cut(s)	531
BarI	GAAGNNNNNNTAC	4 cut(s)	237, 269, 676, 708
BbsI	GAAGAC	2 cut(s)	210, 1223
Bbv12I	GWGCWC	3 cut(s)	774, 1072, 1609
BbvI	GCAGC	3 cut(s)	90, 550, 1492
BccI	CCATC	7 cut(s)	17, 452, 633, 740, 965, 1400, 1532
BceAI	ACGGC	2 cut(s)	821, 1343
BcgI	CGANNNNNNTGC	2 cut(s)	521, 555
BciT130I	CCWGG	3 cut(s)	503, 555, 801
BcnI	CCSGG	2 cut(s)	323, 1236
BcoDI	GTCTC	3 cut(s)	172, 1236, 1347
BfaI	CTAG	5 cut(s)	267, 429, 480, 1124, 1266
BfmI	CTRYAG	2 cut(s)	658, 978
BfuAI	ACCTGC	3 cut(s)	777, 892, 1673
BglI	GCCNNNNNGGC	1 cut(s)	805
BisI	GCNGC	4 cut(s)	79, 114, 564, 1506
BlsI	GCNGC	4 cut(s)	80, 115, 565, 1507
BmcAI	AGTACT	1 cut(s)	1122
Bme1390I	CCNGG	5 cut(s)	323, 503, 555, 801, 1236
Bme18I	GGWCC	2 cut(s)	926, 1522
BmgT120I	GGNCC	4 cut(s)	527, 528, 926, 1522
BmiI	GGNNCC	2 cut(s)	194, 529
BmrFI	CCNGG	5 cut(s)	323, 503, 555, 801, 1236
BmsI	GCATC	5 cut(s)	223, 360, 592, 1152, 1628
BoxI	GACNNNNGTC	2 cut(s)	348, 808
BpiI	GAAGAC	2 cut(s)	210, 1223
BpuMI	CCSGG	2 cut(s)	323, 1236
BsaHI	GRCGYC	1 cut(s)	974
BsaWI	WCCGGW	1 cut(s)	1582
BsaXI	ACNNNNNCTCC	2 cut(s)	1562, 1592
Bse1I	ACTGG	4 cut(s)	767, 928, 1290, 1495
BseBI	CCWGG	3 cut(s)	503, 555, 801
BseGI	GGATG	5 cut(s)	28, 457, 732, 1187, 1543
BseMII	CTCAG	2 cut(s)	999, 1382
BseNI	ACTGG	4 cut(s)	767, 928, 1290, 1495
BseRI	GAGGAG	1 cut(s)	1254
BseSI	GKGCMC	1 cut(s)	531
BseXI	GCAGC	3 cut(s)	90, 550, 1492
BsgI	GTGCAG	2 cut(s)	1179, 1491
BshFI	GGCC	3 cut(s)	529, 624, 799
BsiHKAI	GWGCWC	3 cut(s)	774, 1072, 1609
BsiSI	CCGG	4 cut(s)	73, 323, 1235, 1583
BsmAI	GTCTC	3 cut(s)	172, 1236, 1347
BsmBI	CGTCTC	1 cut(s)	172
BsnI	GGCC	3 cut(s)	529, 624, 799
Bsp120I	GGGCCC	1 cut(s)	527
Bsp1286I	GDGCHC	4 cut(s)	531, 774, 1072, 1609
Bsp143I	GATC	3 cut(s)	192, 880, 990
BspACI	CCGC	3 cut(s)	70, 114, 423
BspANI	GGCC	3 cut(s)	529, 624, 799
BspCNI	CTCAG	2 cut(s)	1000, 1381
BspLI	GGNNCC	2 cut(s)	194, 529
BspMAI	CTGCAG	1 cut(s)	662
BspMI	ACCTGC	3 cut(s)	777, 892, 1673
BspPI	GGATC	3 cut(s)	187, 200, 985
BsrI	ACTGG	4 cut(s)	767, 928, 1290, 1495
BssMI	GATC	3 cut(s)	192, 880, 990
BssNI	GRCGYC	1 cut(s)	974
Bst2UI	CCWGG	3 cut(s)	503, 555, 801
Bst4CI	ACNGT	7 cut(s)	523, 586, 754, 930, 1476, 1519, 1578
Bst6I	CTCTTC	1 cut(s)	109
BstACI	GRCGYC	1 cut(s)	974
BstC8I	GCNNGC	4 cut(s)	375, 1068, 1332, 1441
BstDEI	CTNAG	2 cut(s)	1008, 1368
BstF5I	GGATG	5 cut(s)	28, 457, 732, 1187, 1543
BstHHI	GCGC	1 cut(s)	829
BstKTI	GATC	3 cut(s)	195, 883, 993
BstMAI	GTCTC	3 cut(s)	172, 1236, 1347
BstMBI	GATC	3 cut(s)	192, 880, 990
BstMWI	GCNNNNNNNGC	8 cut(s)	78, 548, 569, 805, 1026, 1505, 1511, 1604
BstNI	CCWGG	3 cut(s)	503, 555, 801
BstPAI	GACNNNNGTC	2 cut(s)	348, 808
BstSCI	CCNGG	5 cut(s)	321, 501, 553, 799, 1234
BstSFI	CTRYAG	2 cut(s)	658, 978
BstSLI	GKGCMC	1 cut(s)	531
BstV1I	GCAGC	3 cut(s)	90, 550, 1492
BstV2I	GAAGAC	2 cut(s)	210, 1223
BstX2I	RGATCY	1 cut(s)	192
BstYI	RGATCY	1 cut(s)	192
BsuRI	GGCC	3 cut(s)	529, 624, 799
BtsCI	GGATG	5 cut(s)	28, 457, 732, 1187, 1543
BtsI	GCAGTG	1 cut(s)	1473
BtsIMutI	CAGTG	5 cut(s)	774, 812, 1297, 1473, 1488
BveI	ACCTGC	3 cut(s)	777, 892, 1673
Cac8I	GCNNGC	4 cut(s)	375, 1068, 1332, 1441
CfoI	GCGC	1 cut(s)	829
Cfr13I	GGNCC	4 cut(s)	527, 528, 926, 1522
CsiI	ACCWGGT	1 cut(s)	553
Csp6I	GTAC	5 cut(s)	650, 684, 750, 936, 1121
CviAII	CATG	5 cut(s)	305, 367, 378, 1304, 1623
CviQI	GTAC	5 cut(s)	650, 684, 750, 936, 1121
DdeI	CTNAG	2 cut(s)	1008, 1368
DpnI	GATC	3 cut(s)	194, 882, 992
DpnII	GATC	3 cut(s)	192, 880, 990
DraIII	CACNNNGTG	1 cut(s)	392
Eam1104I	CTCTTC	1 cut(s)	109
EarI	CTCTTC	1 cut(s)	109
EciI	GGCGGA	1 cut(s)	59
Eco24I	GRGCYC	1 cut(s)	531
Eco32I	GATATC	1 cut(s)	1154
Eco47I	GGWCC	2 cut(s)	926, 1522
Eco57I	CTGAAG	3 cut(s)	222, 695, 1521
EcoRI	GAATTC	1 cut(s)	1285
EcoRII	CCWGG	3 cut(s)	501, 553, 799
EcoRV	GATATC	1 cut(s)	1154
EcoT38I	GRGCYC	1 cut(s)	531
Esp3I	CGTCTC	1 cut(s)	172
FaeI	CATG	5 cut(s)	308, 370, 381, 1307, 1626
FalI	AAGNNNNNCTT	2 cut(s)	1386, 1418
FatI	CATG	5 cut(s)	304, 366, 377, 1303, 1622
FauNDI	CATATG	1 cut(s)	354
FblI	GTMKAC	1 cut(s)	981
Fnu4HI	GCNGC	4 cut(s)	79, 114, 564, 1506
FokI	GGATG	5 cut(s)	35, 464, 719, 1174, 1550
FriOI	GRGCYC	1 cut(s)	531
Fsp4HI	GCNGC	4 cut(s)	79, 114, 564, 1506
FspBI	CTAG	5 cut(s)	267, 429, 480, 1124, 1266
GlaI	GCGC	1 cut(s)	828
GluI	GCNGC	4 cut(s)	79, 114, 564, 1506
HaeIII	GGCC	3 cut(s)	529, 624, 799
HapII	CCGG	4 cut(s)	73, 323, 1235, 1583
HhaI	GCGC	1 cut(s)	829
Hin1I	GRCGYC	1 cut(s)	974
Hin1II	CATG	5 cut(s)	308, 370, 381, 1307, 1626
Hin6I	GCGC	1 cut(s)	827
HinP1I	GCGC	1 cut(s)	827
HincII	GTYRAC	4 cut(s)	33, 1399, 1644, 1662
HindII	GTYRAC	4 cut(s)	33, 1399, 1644, 1662
HinfI	GANTC	7 cut(s)	52, 92, 184, 383, 839, 1244, 1377
HpaII	CCGG	4 cut(s)	73, 323, 1235, 1583
HphI	GGTGA	2 cut(s)	131, 378
Hpy166II	GTNNAC	7 cut(s)	33, 589, 982, 1399, 1522, 1644, 1662
Hpy188I	TCNGA	6 cut(s)	57, 192, 258, 1086, 1110, 1117
Hpy188III	TCNNGA	3 cut(s)	1007, 1055, 1166
Hpy8I	GTNNAC	7 cut(s)	33, 589, 982, 1399, 1522, 1644, 1662
Hpy99I	CGWCG	2 cut(s)	167, 976
HpyAV	CCTTC	4 cut(s)	108, 1183, 1488, 1561
HpyCH4III	ACNGT	7 cut(s)	523, 586, 754, 930, 1476, 1519, 1578
HpyCH4IV	ACGT	2 cut(s)	974, 1612
HpyF10VI	GCNNNNNNNGC	8 cut(s)	78, 548, 569, 805, 1026, 1505, 1511, 1604
HpyF3I	CTNAG	2 cut(s)	1008, 1368
HpySE526I	ACGT	2 cut(s)	974, 1612
Hsp92I	GRCGYC	1 cut(s)	974
Hsp92II	CATG	5 cut(s)	308, 370, 381, 1307, 1626
HspAI	GCGC	1 cut(s)	827
Kzo9I	GATC	3 cut(s)	192, 880, 990
LmnI	GCTCC	2 cut(s)	75, 293
Lsp1109I	GCAGC	3 cut(s)	90, 550, 1492
LweI	GCATC	5 cut(s)	223, 360, 592, 1152, 1628
MabI	ACCWGGT	1 cut(s)	553
MaeI	CTAG	5 cut(s)	267, 429, 480, 1124, 1266
MaeII	ACGT	2 cut(s)	974, 1612
MaeIII	GTNAC	3 cut(s)	434, 810, 1572
MalI	GATC	3 cut(s)	194, 882, 992
MboI	GATC	3 cut(s)	192, 880, 990
MboII	GAAGA	8 cut(s)	96, 98, 179, 215, 467, 687, 701, 1223
MfeI	CAATTG	1 cut(s)	1600
MflI	RGATCY	1 cut(s)	192
MhlI	GDGCHC	4 cut(s)	531, 774, 1072, 1609
MlyI	GAGTC	3 cut(s)	61, 86, 1238
MmeI	TCCRAC	2 cut(s)	1023, 1405
MroXI	GAANNNNTTC	1 cut(s)	1230
MseI	TTAA	4 cut(s)	645, 669, 1098, 1449
MspI	CCGG	4 cut(s)	73, 323, 1235, 1583
MspR9I	CCNGG	5 cut(s)	323, 503, 555, 801, 1236
MunI	CAATTG	1 cut(s)	1600
MvaI	CCWGG	3 cut(s)	503, 555, 801
MwoI	GCNNNNNNNGC	8 cut(s)	78, 548, 569, 805, 1026, 1505, 1511, 1604
NciI	CCSGG	2 cut(s)	323, 1236
NdeI	CATATG	1 cut(s)	354
NdeII	GATC	3 cut(s)	192, 880, 990
NlaIII	CATG	5 cut(s)	308, 370, 381, 1307, 1626
NlaIV	GGNNCC	2 cut(s)	194, 529
NmeAIII	GCCGAG	1 cut(s)	1055
NmuCI	GTSAC	1 cut(s)	810
PcsI	WCGNNNNNNNCGW	2 cut(s)	159, 1162
PdmI	GAANNNNTTC	1 cut(s)	1230
PfeI	GAWTC	4 cut(s)	184, 383, 839, 1377
PfoI	TCCNGGA	1 cut(s)	1234
PkrI	GCNGC	4 cut(s)	80, 115, 565, 1507
PleI	GAGTC	3 cut(s)	60, 86, 1238
PpsI	GAGTC	3 cut(s)	60, 86, 1238
PshAI	GACNNNNGTC	2 cut(s)	348, 808
PsiI	TTATAA	1 cut(s)	1197
Psp1406I	AACGTT	1 cut(s)	1612
Psp6I	CCWGG	3 cut(s)	501, 553, 799
PspGI	CCWGG	3 cut(s)	501, 553, 799
PspN4I	GGNNCC	2 cut(s)	194, 529
PspOMI	GGGCCC	1 cut(s)	527
PspPI	GGNCC	4 cut(s)	527, 528, 926, 1522
PstI	CTGCAG	1 cut(s)	662
PsuI	RGATCY	1 cut(s)	192
RsaI	GTAC	5 cut(s)	651, 685, 751, 937, 1122
RsaNI	GTAC	5 cut(s)	650, 684, 750, 936, 1121
SaqAI	TTAA	4 cut(s)	645, 669, 1098, 1449
SatI	GCNGC	4 cut(s)	79, 114, 564, 1506
Sau3AI	GATC	3 cut(s)	192, 880, 990
Sau96I	GGNCC	4 cut(s)	527, 528, 926, 1522
SbfI	CCTGCAGG	1 cut(s)	662
ScaI	AGTACT	1 cut(s)	1122
SchI	GAGTC	3 cut(s)	61, 86, 1238
ScrFI	CCNGG	5 cut(s)	323, 503, 555, 801, 1236
SdaI	CCTGCAGG	1 cut(s)	662
SduI	GDGCHC	4 cut(s)	531, 774, 1072, 1609
SexAI	ACCWGGT	1 cut(s)	553
SfaNI	GCATC	5 cut(s)	223, 360, 592, 1152, 1628
SfcI	CTRYAG	2 cut(s)	658, 978
SinI	GGWCC	2 cut(s)	926, 1522
Sse8387I	CCTGCAGG	1 cut(s)	662
SsiI	CCGC	3 cut(s)	70, 114, 423
SspMI	CTAG	5 cut(s)	267, 429, 480, 1124, 1266
StyD4I	CCNGG	5 cut(s)	321, 501, 553, 799, 1234
TaaI	ACNGT	7 cut(s)	523, 586, 754, 930, 1476, 1519, 1578
TaiI	ACGT	2 cut(s)	977, 1615
TaqI	TCGA	6 cut(s)	631, 948, 971, 1165, 1247, 1270
TatI	WGTACW	2 cut(s)	683, 1120
TauI	GCSGC	1 cut(s)	116
TfiI	GAWTC	4 cut(s)	184, 383, 839, 1377
Tru1I	TTAA	4 cut(s)	645, 669, 1098, 1449
Tru9I	TTAA	4 cut(s)	645, 669, 1098, 1449
TscAI	CASTG	5 cut(s)	774, 819, 1297, 1473, 1495
TseFI	GTSAC	1 cut(s)	810
TseI	GCWGC	3 cut(s)	78, 563, 1505
Tsp45I	GTSAC	1 cut(s)	810
TspDTI	ATGAA	7 cut(s)	468, 626, 911, 1069, 1176, 1369, 1580
TspGWI	ACGGA	2 cut(s)	98, 151
TspRI	CASTG	5 cut(s)	774, 819, 1297, 1473, 1495
VpaK11BI	GGWCC	2 cut(s)	926, 1522
XapI	RAATTY	2 cut(s)	281, 1285
XmiI	GTMKAC	1 cut(s)	981
XmnI	GAANNNNTTC	1 cut(s)	1230
XspI	CTAG	5 cut(s)	267, 429, 480, 1124, 1266
ZraI	GACGTC	1 cut(s)	975
ZrmI	AGTACT	1 cut(s)	1122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.