Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000224.1

Orthogroup ID

OG0005385

Physical Location & Seq

Genomic Coordinates Forward (+)

14132 .. 17373

Gene Structure 3242 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000224.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1671 bp

atgttggatggtttgttgacgaaaagccaacacaagagtctgaaatctcttttccgccggagcagcaccgaagatgactccccttcctcttcctctgccgccaattctcccaaacccattcctcacctctctcctttcgccaattccgtcgtctctcgctgttccaagattcttcggatccctactgaagacttacagcatcattttgacacacagctacctgaaagtgtaaaggaacttctgacttatgctaggaactttttggaattttgctcctaccaagcactccatgtagtgagtagtcgcccggattatttgagtgataaggactttcgtcatatgacctttgacatgatgcttgcatgggaatcaccttgtgttgagaatatacaactacacaaagaaaccgcttctagcagtaaccaagaagtagaggatgaagatggttggtcgcttttttattctagttctaccaatatggctgtccaggttgatgacaaaaaaactgttgggcccgaagcctttgcacgaatagcacctggttgtgctgctgttgcagatataataactgtccacaacctctatgatgcactcacaaccacatcaggccatcatcgacttcatttccttaaagtaccaccctgcagggttattaaggcttccaaaagtacattagcttcttccattggaaatcttcagctcgttgagggagaaatcatccttgatgttgatggtacagttcccactcaaccagtgctcaaacatattggcaggtctatgtggcctggacggctgtcactgaccaatagtgcgctgtattttgaatcattgggagttggtttgtatgacaaagctgttagatatgatctggcaacagatatgaagcaggtcataaaaccagaattgactggaccgttgggtactcgtctttttgataaagccatcatatacaaatcgacgtctgtagacgagccgatccatttggagtttcctgagttcaaaggcaattctcgccgagattattggttggatatatgtcttgaaatcttgcgtgctcacaggttcattcagaaaaacaaccttaaagcaattcagaaatcagaagtactagcaagggctattttaggcatctggcgatatcgtgcagttcgagaagccttccacttcttttcatcccattataaaaccttacttgctttcaaccttgctgaatgtcttccgggaggagactcgattttgaaaactttgtctagtcgattggttattttgaattccagtgcttcccaacatgatgtttctccacattcaaaacggcaggcgaaattgtctccaatttcacttatagcactaactcagcttggattcatattgcaaaaggaagtcaaccttgatggagaggtaataatagttggagaggtttgtgctggcgaaattaaccccttgcaaatggcagtgaaacagtcattattggacactggaagggctgaagctgcacaggcaactgtggaccaagtgaaagtggatgggattgatacaaatgttgcaataatgaaggttagtattgaacttcacatgttaaattgggttttgcgagccaacatatattataccatttttccaatctgtggtagagaaagaaagtgcatacaaatgtctagacgtgctttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF639

Protein Analysis

556

Amino Acids

62.17

Weight (kDa)

7.64

Isoelectric Point (pI)

46.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005385)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23390
fragaria_vesca	FvH4_4g37320 FvH4_4g37320 FvH4_4g37320 FvH4_4g37320 FvH4_4g37320 FvH4_4g37320
malus_domestica	MD13G1001200.v1.1
prunus_persica	Prupe.1G351500_v2.0.a1 Prupe.1G351500_v2.0.a1 Prupe.1G351500_v2.0.a1 Prupe.1G351500_v2.0.a1 Prupe.1G351500_v2.0.a1 Prupe.1G351500_v2.0.a1
pyrus_communis	pycom13g00090
rosa_chinensis	RchiOBHm_Chr4g0447161 RchiOBHm_Chr4g0447171
rosa_laevigata	RLG00000005599
rosa_multiflora	Rmu_sc0035701.1_g000002 Rmu_ssc0000178.1_g000002 Rmu_ssc0000224.1_g000002
rosa_roxburghii	Rroxscaffold_5G00387550
rosa_rugosa	Rorug04G0378700 Rorug04G0378800
rosa_samantha	Rh4AG439900 Rh4BG449000 Rh4CG466000 Rh4DG447400
rosa_wichuraiana	Rw4G037640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1182
AatII	GACGTC	1 cut(s)	962
Acc36I	ACCTGC	2 cut(s)	762, 877
AccB7I	CCANNNNNTGG	1 cut(s)	1625
AccI	GTMKAC	1 cut(s)	966
AciI	CCGC	3 cut(s)	55, 99, 408
AclWI	GGATC	3 cut(s)	172, 185, 970
AcsI	RAATTY	2 cut(s)	266, 1270
AcuI	CTGAAG	3 cut(s)	207, 680, 1506
AcyI	GRCGYC	1 cut(s)	959
AdeI	CACNNNGTG	1 cut(s)	377
AfaI	GTAC	5 cut(s)	636, 670, 736, 922, 1107
AfiI	CCNNNNNNNGG	1 cut(s)	1625
AflIII	ACRYGT	1 cut(s)	1572
AgsI	TTSAA	8 cut(s)	824, 1000, 1043, 1201, 1240, 1270, 1308, 1565
AjiI	CACGTC	1 cut(s)	1661
AjnI	CCWGG	3 cut(s)	486, 538, 784
AluBI	AGCT	6 cut(s)	217, 677, 700, 854, 1357, 1490
AluI	AGCT	6 cut(s)	217, 677, 700, 854, 1357, 1490
Alw21I	GWGCWC	2 cut(s)	759, 1057
Alw26I	GTCTC	3 cut(s)	157, 1221, 1332
AlwI	GGATC	3 cut(s)	172, 185, 970
AoxI	GGCC	3 cut(s)	512, 607, 782
ApaI	GGGCCC	1 cut(s)	516
ApeKI	GCWGC	3 cut(s)	63, 548, 1490
ApoI	RAATTY	2 cut(s)	266, 1270
Asp700I	GAANNNNTTC	1 cut(s)	1215
AspLEI	GCGC	1 cut(s)	814
AspS9I	GGNCC	4 cut(s)	512, 513, 911, 1507
AsuC2I	CCSGG	2 cut(s)	308, 1221
AsuHPI	GGTGA	2 cut(s)	116, 363
AvaII	GGWCC	2 cut(s)	911, 1507
BaeGI	GKGCMC	1 cut(s)	516
BaeI	ACNNNNGTAYC	2 cut(s)	1524, 1557
BamHI	GGATCC	1 cut(s)	177
BanII	GRGCYC	1 cut(s)	516
BarI	GAAGNNNNNNTAC	4 cut(s)	222, 254, 661, 693
BbsI	GAAGAC	2 cut(s)	195, 1208
Bbv12I	GWGCWC	2 cut(s)	759, 1057
BbvI	GCAGC	3 cut(s)	75, 535, 1477
BccI	CCATC	7 cut(s)	2, 437, 618, 725, 950, 1385, 1517
BceAI	ACGGC	2 cut(s)	806, 1328
BcgI	CGANNNNNNTGC	2 cut(s)	506, 540
BciT130I	CCWGG	3 cut(s)	488, 540, 786
BcnI	CCSGG	2 cut(s)	308, 1221
BcoDI	GTCTC	3 cut(s)	157, 1221, 1332
BfaI	CTAG	6 cut(s)	252, 414, 465, 1109, 1251, 1656
BfmI	CTRYAG	2 cut(s)	643, 963
BfuAI	ACCTGC	2 cut(s)	762, 877
BglI	GCCNNNNNGGC	1 cut(s)	790
BisI	GCNGC	4 cut(s)	64, 99, 549, 1491
BlsI	GCNGC	4 cut(s)	65, 100, 550, 1492
BmcAI	AGTACT	1 cut(s)	1107
Bme1390I	CCNGG	5 cut(s)	308, 488, 540, 786, 1221
Bme18I	GGWCC	2 cut(s)	911, 1507
BmgBI	CACGTC	1 cut(s)	1661
BmgT120I	GGNCC	4 cut(s)	512, 513, 911, 1507
BmiI	GGNNCC	2 cut(s)	179, 514
BmrFI	CCNGG	5 cut(s)	308, 488, 540, 786, 1221
BmsI	GCATC	4 cut(s)	208, 345, 577, 1137
BoxI	GACNNNNGTC	2 cut(s)	333, 793
BpiI	GAAGAC	2 cut(s)	195, 1208
BpuMI	CCSGG	2 cut(s)	308, 1221
BsaHI	GRCGYC	1 cut(s)	959
Bsc4I	CCNNNNNNNGG	1 cut(s)	1625
Bse1I	ACTGG	4 cut(s)	752, 913, 1275, 1480
BseBI	CCWGG	3 cut(s)	488, 540, 786
BseGI	GGATG	5 cut(s)	13, 442, 717, 1172, 1528
BseLI	CCNNNNNNNGG	1 cut(s)	1625
BseMII	CTCAG	2 cut(s)	984, 1367
BseNI	ACTGG	4 cut(s)	752, 913, 1275, 1480
BseRI	GAGGAG	1 cut(s)	1239
BseSI	GKGCMC	1 cut(s)	516
BseXI	GCAGC	3 cut(s)	75, 535, 1477
BsgI	GTGCAG	2 cut(s)	1164, 1476
BshFI	GGCC	3 cut(s)	514, 609, 784
BsiHKAI	GWGCWC	2 cut(s)	759, 1057
BsiSI	CCGG	3 cut(s)	58, 308, 1220
BslI	CCNNNNNNNGG	1 cut(s)	1625
BsmAI	GTCTC	3 cut(s)	157, 1221, 1332
BsmBI	CGTCTC	1 cut(s)	157
BsnI	GGCC	3 cut(s)	514, 609, 784
Bsp120I	GGGCCC	1 cut(s)	512
Bsp1286I	GDGCHC	3 cut(s)	516, 759, 1057
Bsp143I	GATC	3 cut(s)	177, 865, 975
BspACI	CCGC	3 cut(s)	55, 99, 408
BspANI	GGCC	3 cut(s)	514, 609, 784
BspCNI	CTCAG	2 cut(s)	985, 1366
BspLI	GGNNCC	2 cut(s)	179, 514
BspMAI	CTGCAG	1 cut(s)	647
BspMI	ACCTGC	2 cut(s)	762, 877
BspPI	GGATC	3 cut(s)	172, 185, 970
BsrI	ACTGG	4 cut(s)	752, 913, 1275, 1480
BssMI	GATC	3 cut(s)	177, 865, 975
BssNI	GRCGYC	1 cut(s)	959
Bst2UI	CCWGG	3 cut(s)	488, 540, 786
Bst4CI	ACNGT	6 cut(s)	508, 571, 739, 915, 1461, 1504
Bst6I	CTCTTC	1 cut(s)	94
BstACI	GRCGYC	1 cut(s)	959
BstC8I	GCNNGC	5 cut(s)	360, 1053, 1317, 1426, 1593
BstDEI	CTNAG	2 cut(s)	993, 1353
BstF5I	GGATG	5 cut(s)	13, 442, 717, 1172, 1528
BstHHI	GCGC	1 cut(s)	814
BstKTI	GATC	3 cut(s)	180, 868, 978
BstMAI	GTCTC	3 cut(s)	157, 1221, 1332
BstMBI	GATC	3 cut(s)	177, 865, 975
BstMWI	GCNNNNNNNGC	7 cut(s)	63, 533, 554, 790, 1011, 1490, 1496
BstNI	CCWGG	3 cut(s)	488, 540, 786
BstNSI	RCATGY	1 cut(s)	1576
BstPAI	GACNNNNGTC	2 cut(s)	333, 793
BstSCI	CCNGG	5 cut(s)	306, 486, 538, 784, 1219
BstSFI	CTRYAG	2 cut(s)	643, 963
BstSLI	GKGCMC	1 cut(s)	516
BstV1I	GCAGC	3 cut(s)	75, 535, 1477
BstV2I	GAAGAC	2 cut(s)	195, 1208
BstX2I	RGATCY	1 cut(s)	177
BstYI	RGATCY	1 cut(s)	177
BsuRI	GGCC	3 cut(s)	514, 609, 784
BtrI	CACGTC	1 cut(s)	1661
BtsCI	GGATG	5 cut(s)	13, 442, 717, 1172, 1528
BtsI	GCAGTG	1 cut(s)	1458
BtsIMutI	CAGTG	5 cut(s)	759, 797, 1282, 1458, 1473
BveI	ACCTGC	2 cut(s)	762, 877
Cac8I	GCNNGC	5 cut(s)	360, 1053, 1317, 1426, 1593
CfoI	GCGC	1 cut(s)	814
Cfr13I	GGNCC	4 cut(s)	512, 513, 911, 1507
CsiI	ACCWGGT	1 cut(s)	538
Csp6I	GTAC	5 cut(s)	635, 669, 735, 921, 1106
CviAII	CATG	5 cut(s)	290, 352, 363, 1289, 1573
CviQI	GTAC	5 cut(s)	635, 669, 735, 921, 1106
DdeI	CTNAG	2 cut(s)	993, 1353
DpnI	GATC	3 cut(s)	179, 867, 977
DpnII	GATC	3 cut(s)	177, 865, 975
DraIII	CACNNNGTG	1 cut(s)	377
Eam1104I	CTCTTC	1 cut(s)	94
EarI	CTCTTC	1 cut(s)	94
EciI	GGCGGA	1 cut(s)	44
Eco24I	GRGCYC	1 cut(s)	516
Eco32I	GATATC	1 cut(s)	1139
Eco47I	GGWCC	2 cut(s)	911, 1507
Eco57I	CTGAAG	3 cut(s)	207, 680, 1506
EcoRI	GAATTC	1 cut(s)	1270
EcoRII	CCWGG	3 cut(s)	486, 538, 784
EcoRV	GATATC	1 cut(s)	1139
EcoT38I	GRGCYC	1 cut(s)	516
Esp3I	CGTCTC	1 cut(s)	157
FaeI	CATG	5 cut(s)	293, 355, 366, 1292, 1576
FalI	AAGNNNNNCTT	2 cut(s)	1371, 1403
FatI	CATG	5 cut(s)	289, 351, 362, 1288, 1572
FauNDI	CATATG	1 cut(s)	339
FblI	GTMKAC	1 cut(s)	966
Fnu4HI	GCNGC	4 cut(s)	64, 99, 549, 1491
FokI	GGATG	5 cut(s)	20, 449, 704, 1159, 1535
FriOI	GRGCYC	1 cut(s)	516
Fsp4HI	GCNGC	4 cut(s)	64, 99, 549, 1491
FspBI	CTAG	6 cut(s)	252, 414, 465, 1109, 1251, 1656
GlaI	GCGC	1 cut(s)	813
GluI	GCNGC	4 cut(s)	64, 99, 549, 1491
HaeIII	GGCC	3 cut(s)	514, 609, 784
HapII	CCGG	3 cut(s)	58, 308, 1220
HhaI	GCGC	1 cut(s)	814
Hin1I	GRCGYC	1 cut(s)	959
Hin1II	CATG	5 cut(s)	293, 355, 366, 1292, 1576
Hin6I	GCGC	1 cut(s)	812
HinP1I	GCGC	1 cut(s)	812
HincII	GTYRAC	2 cut(s)	18, 1384
HindII	GTYRAC	2 cut(s)	18, 1384
HinfI	GANTC	7 cut(s)	37, 77, 169, 368, 824, 1229, 1362
HpaII	CCGG	3 cut(s)	58, 308, 1220
HphI	GGTGA	2 cut(s)	116, 363
Hpy166II	GTNNAC	5 cut(s)	18, 574, 967, 1384, 1507
Hpy188I	TCNGA	6 cut(s)	42, 177, 243, 1071, 1095, 1102
Hpy188III	TCNNGA	4 cut(s)	992, 1040, 1151, 1656
Hpy8I	GTNNAC	5 cut(s)	18, 574, 967, 1384, 1507
Hpy99I	CGWCG	2 cut(s)	152, 961
HpyAV	CCTTC	4 cut(s)	93, 1168, 1473, 1546
HpyCH4III	ACNGT	6 cut(s)	508, 571, 739, 915, 1461, 1504
HpyCH4IV	ACGT	2 cut(s)	959, 1660
HpyF10VI	GCNNNNNNNGC	7 cut(s)	63, 533, 554, 790, 1011, 1490, 1496
HpyF3I	CTNAG	2 cut(s)	993, 1353
HpySE526I	ACGT	2 cut(s)	959, 1660
Hsp92I	GRCGYC	1 cut(s)	959
Hsp92II	CATG	5 cut(s)	293, 355, 366, 1292, 1576
HspAI	GCGC	1 cut(s)	812
Kzo9I	GATC	3 cut(s)	177, 865, 975
LmnI	GCTCC	2 cut(s)	60, 278
Lsp1109I	GCAGC	3 cut(s)	75, 535, 1477
LweI	GCATC	4 cut(s)	208, 345, 577, 1137
MabI	ACCWGGT	1 cut(s)	538
MaeI	CTAG	6 cut(s)	252, 414, 465, 1109, 1251, 1656
MaeII	ACGT	2 cut(s)	959, 1660
MaeIII	GTNAC	2 cut(s)	419, 795
MalI	GATC	3 cut(s)	179, 867, 977
MboI	GATC	3 cut(s)	177, 865, 975
MboII	GAAGA	8 cut(s)	81, 83, 164, 200, 452, 672, 686, 1208
MflI	RGATCY	1 cut(s)	177
MhlI	GDGCHC	3 cut(s)	516, 759, 1057
MlyI	GAGTC	3 cut(s)	46, 71, 1223
MmeI	TCCRAC	2 cut(s)	1008, 1390
MroXI	GAANNNNTTC	1 cut(s)	1215
MseI	TTAA	6 cut(s)	630, 654, 1083, 1434, 1577, 1669
MslI	CAYNNNNRTG	1 cut(s)	1649
MspI	CCGG	3 cut(s)	58, 308, 1220
MspR9I	CCNGG	5 cut(s)	308, 488, 540, 786, 1221
MvaI	CCWGG	3 cut(s)	488, 540, 786
MwoI	GCNNNNNNNGC	7 cut(s)	63, 533, 554, 790, 1011, 1490, 1496
NciI	CCSGG	2 cut(s)	308, 1221
NdeI	CATATG	1 cut(s)	339
NdeII	GATC	3 cut(s)	177, 865, 975
NlaIII	CATG	5 cut(s)	293, 355, 366, 1292, 1576
NlaIV	GGNNCC	2 cut(s)	179, 514
NmeAIII	GCCGAG	1 cut(s)	1040
NmuCI	GTSAC	1 cut(s)	795
NspI	RCATGY	1 cut(s)	1576
PciI	ACATGT	1 cut(s)	1572
PcsI	WCGNNNNNNNCGW	2 cut(s)	144, 1147
PdmI	GAANNNNTTC	1 cut(s)	1215
PfeI	GAWTC	4 cut(s)	169, 368, 824, 1362
PflMI	CCANNNNNTGG	1 cut(s)	1625
PfoI	TCCNGGA	1 cut(s)	1219
PkrI	GCNGC	4 cut(s)	65, 100, 550, 1492
PleI	GAGTC	3 cut(s)	45, 71, 1223
PpsI	GAGTC	3 cut(s)	45, 71, 1223
PscI	ACATGT	1 cut(s)	1572
PshAI	GACNNNNGTC	2 cut(s)	333, 793
PsiI	TTATAA	1 cut(s)	1182
Psp6I	CCWGG	3 cut(s)	486, 538, 784
PspGI	CCWGG	3 cut(s)	486, 538, 784
PspN4I	GGNNCC	2 cut(s)	179, 514
PspOMI	GGGCCC	1 cut(s)	512
PspPI	GGNCC	4 cut(s)	512, 513, 911, 1507
PstI	CTGCAG	1 cut(s)	647
PsuI	RGATCY	1 cut(s)	177
RsaI	GTAC	5 cut(s)	636, 670, 736, 922, 1107
RsaNI	GTAC	5 cut(s)	635, 669, 735, 921, 1106
RseI	CAYNNNNRTG	1 cut(s)	1649
SaqAI	TTAA	6 cut(s)	630, 654, 1083, 1434, 1577, 1669
SatI	GCNGC	4 cut(s)	64, 99, 549, 1491
Sau3AI	GATC	3 cut(s)	177, 865, 975
Sau96I	GGNCC	4 cut(s)	512, 513, 911, 1507
SbfI	CCTGCAGG	1 cut(s)	647
ScaI	AGTACT	1 cut(s)	1107
SchI	GAGTC	3 cut(s)	46, 71, 1223
ScrFI	CCNGG	5 cut(s)	308, 488, 540, 786, 1221
SdaI	CCTGCAGG	1 cut(s)	647
SduI	GDGCHC	3 cut(s)	516, 759, 1057
SexAI	ACCWGGT	1 cut(s)	538
SfaNI	GCATC	4 cut(s)	208, 345, 577, 1137
SfcI	CTRYAG	2 cut(s)	643, 963
SinI	GGWCC	2 cut(s)	911, 1507
SmiMI	CAYNNNNRTG	1 cut(s)	1649
Sse8387I	CCTGCAGG	1 cut(s)	647
SsiI	CCGC	3 cut(s)	55, 99, 408
SspMI	CTAG	6 cut(s)	252, 414, 465, 1109, 1251, 1656
StyD4I	CCNGG	5 cut(s)	306, 486, 538, 784, 1219
TaaI	ACNGT	6 cut(s)	508, 571, 739, 915, 1461, 1504
TaiI	ACGT	2 cut(s)	962, 1663
TaqI	TCGA	5 cut(s)	616, 956, 1150, 1232, 1255
TatI	WGTACW	2 cut(s)	668, 1105
TauI	GCSGC	1 cut(s)	101
TfiI	GAWTC	4 cut(s)	169, 368, 824, 1362
Tru1I	TTAA	6 cut(s)	630, 654, 1083, 1434, 1577, 1669
Tru9I	TTAA	6 cut(s)	630, 654, 1083, 1434, 1577, 1669
TscAI	CASTG	5 cut(s)	759, 804, 1282, 1458, 1480
TseFI	GTSAC	1 cut(s)	795
TseI	GCWGC	3 cut(s)	63, 548, 1490
Tsp45I	GTSAC	1 cut(s)	795
TspDTI	ATGAA	7 cut(s)	453, 611, 896, 1054, 1161, 1354, 1565
TspGWI	ACGGA	1 cut(s)	136
TspRI	CASTG	5 cut(s)	759, 804, 1282, 1458, 1480
Van91I	CCANNNNNTGG	1 cut(s)	1625
VpaK11BI	GGWCC	2 cut(s)	911, 1507
XapI	RAATTY	2 cut(s)	266, 1270
XbaI	TCTAGA	1 cut(s)	1655
XceI	RCATGY	1 cut(s)	1576
XmiI	GTMKAC	1 cut(s)	966
XmnI	GAANNNNTTC	1 cut(s)	1215
XspI	CTAG	6 cut(s)	252, 414, 465, 1109, 1251, 1656
ZraI	GACGTC	1 cut(s)	960
ZrmI	AGTACT	1 cut(s)	1107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.