Rorug04G0378700

Plant protein of unknown function (DUF639)

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
54924385 .. 54934891
10507 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0378700.1

Sequence Viewer

Length: 3258 bp
ATGGAAGACCTGTGGAAGCGAGCCAAGAGCTTCGCGGAAGAAGCCGCCAAGAAATCCCAGACCATCACCACCTCCTCCGCCTCCGCCAAAATCTCCGACTTAGTCTCCGAGACCGCCAAGCGATCCCGCGAGTTCGCCGCCGAGGCCTCCAAGAAAGCCGACGAGATCAAATCCGCCGCCCTCAAGCAAGCCGATCAGATCAAGTCTCTCTCCGTCTCCGAGATCATACCTCCTCAGCTCTCCAACCTCTCCCTCGTCAACTCCTCCTCCTCCTCCGCCTCTGCCTCGGTCAATGAGCCTTCGCCGGAGGAGCTTCAGAAGTTTGGAGTCTCCGACGATCTCAGAGACTTCGTCAAGGGACTCACTTCGGATACCTTCAAGCACTTTCCGATCCAAGATGAAGCGGAGGAGGTTTCTGAGGTGCCGACTACGGCGTCGAATGTGAGGAAGGATCTGACTGAGTGGCAGGAGCGCCATGCCACTCTGGTTCTCACTACTGTTAAGGAGATTTCGAGGTTAAGATATGAACTGTGCCCACGTGTTATGAAAGAACGAAGATTCTGGAGGATATATTTTACCCTTGTGAGCAGCCATGTGGCTCCATATGAGAAGCACTATATGGAGGAGTTGAAGCTCAAGGAAGCAGAGCAATTGGAAGATGATAAAGCGAAGCAAACACCTGTTGTTGGAGAGGCTGATAAAGCAGAAGGAAGTGAAACAAACAAGAAGAGCTTAACTTCCAAATCTTCATCAACTGAGCAGGACTTGGATACATTCCTTTTGGGGGATCTTGAAGACAGCGATGGGGGTCAAGATGATGGCAACGACAATTTTGATGATGATTTCGACAAGATTGGCGATTCGTTTTCAGTTGATGCTTCACCTGCAGAACTCTATAATTGGAACAGTAGCAGTTCCCCTGCATTTGGAGACTTCATGGCTCTTCTTTCCTTCATCCTCAATCAAAACTGCTCCCTCCAAAGGTCCCTCACTTTTGGCTTAATTCCCTACATATCCTCCTCCCTCTTCTCTACTCTTTGCAGAGACCACCCCTCCTCCCCTGCCCCACCGCGGGCCTCTCCGCCGGTCCCAAAGAAAGTACCTTTCACAGTCTCAGCTCACGGCAGAACGTGGCAGGACCCCTACCGTTGGATGTCCAACACCGACGACCCTGATCTCTCCGACCACCTCAACCAGGAAAACTCATACGCCGATGCTTTCATGGCTGACACTCGCAGCCTCCAACGAACTCTGGTCTCTGAGATGACAAGTCGTGTGCCCACCAAGATTTCAACCCCTCCTGAGCTTTGGGGACCCTGGTTGTATTACCAATACATTCCAGAAGGGAAAGAATACCCAGTTCTTTGTAGAAGATTAGAAATCAAAAAGAAAGAAATATGGAAAGCTTCTTTCTTTCTTTCTCATGTGATATGTTATGTGCATGTTGGTACGTGTCGAATTTCACCAGACCACCATTTCCTAGCCTACACACTCGATATCAAGGGTGATGAGCAGTTCATTCTTCAAATTAAGGACCTAAGACGTGGATGTATCATTCCCAAAGTACATGTTAATGGTGTTGTTAGCTTGGCATGGGCTCAGGATAGCAGTACTCTGTTTTATACACTATCAGATGAGAATCAACGACCTTACAGGGTTGTCTGCTCAAAACTAGGATCTGATGATATGGAAAATATCACTGTGTTTACAGAAAGTGATTCCAGCTTCTGTGTGGATATAACAAGCACAAAAGATGGCAAGTTTATAACTGTTTATTTGATAGATTCTGCCAACCCATTAGACAGATTGCAGAAAGTGTGGAAGCGTGTTCCTGGTGTACAGTATTTTCTGGAACATCATCATGGAATATTTTATGTTCTTACTAATGCTCCTTTGCGAGAAAGCAAGGAGTGGTCAGGTGAAGGTTATTACCTAGCTAGATGCCGTGTTGAAGATATACTGTCATCTAATTGGCAGAATATCATCATTCCAAGTGAAGACTTCAGCATTCAAGACATGGACATGTTTGATGGGCATCTGGTCCTTTTTCTCAACAAGAAGGATTGCTCCATCTTTTGTTCCATTGATTTGCCTATGGCTGTTCATTGTAAGCATCAAGTGAAGATTGAAGATCTTGATCCCTGGTTTTTCCCTCTGCCCTCAAATTCATGTAGCGTTGCTCCAGGTTCAAACCATGACTTCCAGAATTCAGCATACCGTGTGGTGCTTTCTTCTCCTGTGATGCCTGATGTAGTTTTTGACTATGACATGTCAACACGGAGATTCTCAGTTGTGCAGCAAGAAGAAGTGATCGGCTTTTGTGATTCAAGCTCACCAGCCAATGAGATAGATATGAACCAAACTCTTGTTAAACAAAATGAGAAGGATAAAAATGTCCAGATAAGTGAATCACAAAGATGGAAAGACTTTTCTGGTGAATACTGCTGTGAGAAGAGGGAAGTTATTTCCCATGATGGTGTTAAAGTTCCTTTGACCCTACTGTACTCTCATACGGCCTGGAAAAAGGGTCGGTCTCCTGGGCTTCTACACGGATATGGAGCATATGGGGAGGTTTTAGATAAAAGCTGGTGCACTGATCGGCTGAGTTTACTTGACCGGGGATGGGTGGTGGCATTTGCTGATGTGAGGGGTAGTGGTGGAGATTCTTCGTGGCATAAAGCTGGAAGTCAGTTTAATAAACTGAATTCGATTTACGATTTTGTATCATGTGGCAACTACCTGATTAAAGAGGGTTATGTACATAGCGATCAGCTTGGTGCTATTGGACATAGTGCTGGAGGTCTACTTGTTGGAGCAACTATCAATAAGTACCCAGATCTATTTCGTGCTGCTATTTTGAAGGTTCCATTTCTTGACGTATGCAACACTCTAATGGATCCCAGCTTGCCCCTCACGATTCTGGATTATGAAGAATTTGGCAATCCTCAGATAAAGTCCCAATTTGAGCATATCTTGAGTTATTCACCTTATGATAATATCTCTCAAGGCAGTTGTTACCCTTCAATGCTTGTTACAGCGTCCTTTCATGACTCGAGGGTCGGGTTTTGGGAAGCTGCCAAGTGGGTGGCCAAAGTTCGAGATAGCACATGTCCTCGTTGTTCTTGTTCTGTTATTCTGAAGACAAATATGACCGGAGGACATTTTGGCGAAGGTGGACGCTATGCTCAAAGTGAGGAAACTGCGTATGATTATGCTTTCCTTTTTAAAGCTATGGGGATGGTGAAGAATGAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1085

Amino Acids

122.18

Weight (kDa)

5.33

Isoelectric Point (pI)

48.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSD PF03909 152 - 199 1e-10 BSD domain
Peptidase_S9_N PF02897 361 - 767 2.6e-48 Prolyl oligopeptidase, N-terminal beta-propeller domain
Peptidase_S9 PF00326 867 - 1079 9.8e-45 Prolyl oligopeptidase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1766
AarI CACCTGC 1 cut(s) 892
AasI GACNNNNNNGTC 2 cut(s) 433, 3056
Acc36I ACCTGC 1 cut(s) 892
AccB1I GGYRCC 1 cut(s) 421
AccI GTMKAC 1 cut(s) 2803
AccII CGCG 3 cut(s) 35, 129, 1072
AclWI GGATC 8 cut(s) 117, 385, 459, 795, 1684, 2132, 2891, 2904
AcoI YGGCCR 1 cut(s) 3087
AcsI RAATTY 5 cut(s) 1458, 2164, 2206, 2704, 2933
AcuI CTGAAG 3 cut(s) 299, 1987, 3158
AcvI CACGTG 1 cut(s) 539
AcyI GRCGYC 1 cut(s) 434
AfaI GTAC 8 cut(s) 1101, 1450, 1566, 1612, 1839, 2504, 2760, 2831
AfiI CCNNNNNNNGG 9 cut(s) 686, 784, 926, 981, 1071, 1072, 1149, 1195, 2623
AflIII ACRYGT 6 cut(s) 538, 1451, 1567, 2022, 2268, 3107
AjiI CACGTC 1 cut(s) 1544
AjnI CCWGG 7 cut(s) 1194, 1316, 1831, 2141, 2182, 2516, 2536
Alw21I GWGCWC 1 cut(s) 2594
Alw44I GTGCAC 1 cut(s) 2590
AlwI GGATC 8 cut(s) 117, 385, 459, 795, 1684, 2132, 2891, 2904
AlwNI CAGNNNCTG 1 cut(s) 1728
Ama87I CYCGRG 1 cut(s) 3052
AoxI GGCC 4 cut(s) 144, 1074, 2514, 3087
ApaLI GTGCAC 1 cut(s) 2590
ApeKI GCWGC 5 cut(s) 588, 1236, 2296, 2849, 3074
ApoI RAATTY 5 cut(s) 1458, 2164, 2206, 2704, 2933
AspLEI GCGC 1 cut(s) 474
AspS9I GGNCC 7 cut(s) 984, 1074, 1087, 1138, 1313, 1534, 2041
AsuC2I CCSGG 1 cut(s) 2618
AsuHPI GGTGA 9 cut(s) 58, 873, 1455, 1517, 1931, 2325, 2447, 2976, 3253
AvaI CYCGRG 1 cut(s) 3052
AvaII GGWCC 6 cut(s) 984, 1087, 1138, 1313, 1534, 2041
BaeGI GKGCMC 3 cut(s) 536, 1281, 2594
BalI TGGCCA 1 cut(s) 3089
BamHI GGATCC 1 cut(s) 2896
BanI GGYRCC 1 cut(s) 421
BanII GRGCYC 1 cut(s) 1600
BbrPI CACGTG 1 cut(s) 539
BbsI GAAGAC 4 cut(s) 12, 801, 2004, 3146
Bbv12I GWGCWC 1 cut(s) 2594
BbvCI CCTCAGC 1 cut(s) 234
BbvI GCAGC 5 cut(s) 600, 1248, 2308, 2836, 3061
BceAI ACGGC 4 cut(s) 447, 1138, 1929, 2529
BciT130I CCWGG 7 cut(s) 1196, 1318, 1833, 2143, 2184, 2518, 2538
BciVI GTATCC 2 cut(s) 364, 763
BcnI CCSGG 1 cut(s) 2618
BfaI CTAG 4 cut(s) 1481, 1673, 1934, 1938
BfmI CTRYAG 1 cut(s) 885
BfoI RGCGCY 1 cut(s) 475
BfuAI ACCTGC 1 cut(s) 892
BfuI GTATCC 2 cut(s) 364, 763
BglI GCCNNNNNGGC 1 cut(s) 143
BglII AGATCT 2 cut(s) 2131, 2836
BisI GCNGC 8 cut(s) 45, 138, 177, 589, 1237, 2297, 2850, 3075
BlsI GCNGC 8 cut(s) 46, 139, 178, 590, 1238, 2298, 2851, 3076
BmcAI AGTACT 1 cut(s) 1612
Bme1390I CCNGG 8 cut(s) 1196, 1318, 1833, 2143, 2184, 2518, 2538, 2618
Bme18I GGWCC 6 cut(s) 984, 1087, 1138, 1313, 1534, 2041
BmeT110I CYCGRG 1 cut(s) 3052
BmgBI CACGTC 1 cut(s) 1544
BmgT120I GGNCC 7 cut(s) 984, 1074, 1087, 1138, 1313, 1534, 2041
BmiI GGNNCC 9 cut(s) 423, 600, 986, 1089, 1140, 1314, 1315, 2865, 2898
BmrFI CCNGG 8 cut(s) 1196, 1318, 1833, 2143, 2184, 2518, 2538, 2618
BmrI ACTGGG 1 cut(s) 1352
BmsI GCATC 6 cut(s) 865, 1204, 1931, 2044, 2122, 2232
BmuI ACTGGG 1 cut(s) 1352
BpiI GAAGAC 4 cut(s) 12, 801, 2004, 3146
BpmI CTGGAG 3 cut(s) 583, 2166, 2817
Bpu10I CCTNAGC 3 cut(s) 234, 1302, 1599
BpuEI CTTGAG 4 cut(s) 167, 620, 2988, 2995
BpuMI CCSGG 1 cut(s) 2618
BsaAI YACGTR 2 cut(s) 539, 1452
BsaBI GATNNNNATC 3 cut(s) 1638, 2034, 2136
BsaHI GRCGYC 1 cut(s) 434
BsaI GGTCTC 4 cut(s) 104, 1038, 1261, 2538
BsaJI CCNNGG 7 cut(s) 141, 285, 1070, 1316, 2141, 2537, 2617
BsaWI WCCGGW 1 cut(s) 3152
Bsc4I CCNNNNNNNGG 9 cut(s) 686, 784, 926, 981, 1071, 1072, 1149, 1195, 2623
Bse118I RCCGGY 1 cut(s) 1084
Bse1I ACTGG 1 cut(s) 1358
Bse8I GATNNNNATC 3 cut(s) 1638, 2034, 2136
BseBI CCWGG 7 cut(s) 1196, 1318, 1833, 2143, 2184, 2518, 2538
BseDI CCNNGG 7 cut(s) 141, 285, 1070, 1316, 2141, 2537, 2617
BseGI GGATG 5 cut(s) 954, 1158, 1553, 2627, 3243
BseJI GATNNNNATC 3 cut(s) 1638, 2034, 2136
BseLI CCNNNNNNNGG 9 cut(s) 686, 784, 926, 981, 1071, 1072, 1149, 1195, 2623
BseNI ACTGG 1 cut(s) 1358
BseSI GKGCMC 3 cut(s) 536, 1281, 2594
BseXI GCAGC 5 cut(s) 600, 1248, 2308, 2836, 3061
BseYI CCCAGC 1 cut(s) 2900
BsgI GTGCAG 1 cut(s) 2315
Bsh1236I CGCG 3 cut(s) 35, 129, 1072
BshFI GGCC 4 cut(s) 146, 1076, 2516, 3089
BshNI GGYRCC 1 cut(s) 421
BsiHKAI GWGCWC 1 cut(s) 2594
BsiHKCI CYCGRG 1 cut(s) 3052
BsiSI CCGG 4 cut(s) 305, 1085, 2617, 3153
BslFI GGGAC 5 cut(s) 372, 970, 1073, 1326, 2941
BslI CCNNNNNNNGG 9 cut(s) 686, 784, 926, 981, 1071, 1072, 1149, 1195, 2623
BsmBI CGTCTC 1 cut(s) 220
BsmFI GGGAC 5 cut(s) 372, 970, 1073, 1326, 2941
BsmI GAATGC 1 cut(s) 2007
BsnI GGCC 4 cut(s) 146, 1076, 2516, 3089
Bso31I GGTCTC 4 cut(s) 104, 1038, 1261, 2538
BsoBI CYCGRG 1 cut(s) 3052
Bsp1286I GDGCHC 4 cut(s) 536, 1281, 1600, 2594
Bsp1407I TGTACA 2 cut(s) 1837, 2758
BspANI GGCC 4 cut(s) 146, 1076, 2516, 3089
BspFNI CGCG 3 cut(s) 35, 129, 1072
BspHI TCATGA 1 cut(s) 3046
BspLI GGNNCC 9 cut(s) 423, 600, 986, 1089, 1140, 1314, 1315, 2865, 2898
BspMAI CTGCAG 1 cut(s) 889
BspMI ACCTGC 1 cut(s) 892
BspPI GGATC 8 cut(s) 117, 385, 459, 795, 1684, 2132, 2891, 2904
BspQI GCTCTTC 2 cut(s) 722, 948
BspT107I GGYRCC 1 cut(s) 421
BspTNI GGTCTC 4 cut(s) 104, 1038, 1261, 2538
BsrFI RCCGGY 1 cut(s) 1084
BsrGI TGTACA 2 cut(s) 1837, 2758
BsrI ACTGG 1 cut(s) 1358
BssAI RCCGGY 1 cut(s) 1084
BssECI CCNNGG 7 cut(s) 141, 285, 1070, 1316, 2141, 2537, 2617
BssNI GRCGYC 1 cut(s) 434
Bst2UI CCWGG 7 cut(s) 1196, 1318, 1833, 2143, 2184, 2518, 2538
Bst6I CTCTTC 4 cut(s) 722, 948, 1031, 2447
BstACI GRCGYC 1 cut(s) 434
BstAUI TGTACA 2 cut(s) 1837, 2758
BstBAI YACGTR 2 cut(s) 539, 1452
BstC8I GCNNGC 4 cut(s) 21, 189, 1074, 2906
BstDSI CCRYGG 1 cut(s) 1070
BstENI CCTNNNNNAGG 1 cut(s) 1193
BstF5I GGATG 5 cut(s) 954, 1158, 1553, 2627, 3243
BstFNI CGCG 3 cut(s) 35, 129, 1072
BstH2I RGCGCY 1 cut(s) 475
BstHHI GCGC 1 cut(s) 474
BstMWI GCNNNNNNNGC 6 cut(s) 41, 143, 310, 701, 884, 1223
BstNI CCWGG 7 cut(s) 1196, 1318, 1833, 2143, 2184, 2518, 2538
BstNSI RCATGY 5 cut(s) 1445, 1571, 2026, 2272, 3111
BstSCI CCNGG 8 cut(s) 1194, 1316, 1831, 2141, 2182, 2516, 2536, 2616
BstSFI CTRYAG 1 cut(s) 885
BstSLI GKGCMC 3 cut(s) 536, 1281, 2594
BstUI CGCG 3 cut(s) 35, 129, 1072
BstV1I GCAGC 5 cut(s) 600, 1248, 2308, 2836, 3061
BstV2I GAAGAC 4 cut(s) 12, 801, 2004, 3146
BstX2I RGATCY 6 cut(s) 451, 787, 1676, 2131, 2836, 2896
BstXI CCANNNNNNTGG 1 cut(s) 3085
BstYI RGATCY 6 cut(s) 451, 787, 1676, 2131, 2836, 2896
BsuI GTATCC 2 cut(s) 364, 763
BsuRI GGCC 4 cut(s) 146, 1076, 2516, 3089
BtgI CCRYGG 1 cut(s) 1070
BtgZI GCGATG 1 cut(s) 816
BtrI CACGTC 1 cut(s) 1544
BtsCI GGATG 5 cut(s) 954, 1158, 1553, 2627, 3243
BtsIMutI CAGTG 2 cut(s) 1698, 2592
BveI ACCTGC 1 cut(s) 892
Cac8I GCNNGC 4 cut(s) 21, 189, 1074, 2906
CaiI CAGNNNCTG 1 cut(s) 1728
CciI TCATGA 1 cut(s) 3046
CfoI GCGC 1 cut(s) 474
Cfr10I RCCGGY 1 cut(s) 1084
Cfr13I GGNCC 7 cut(s) 984, 1074, 1087, 1138, 1313, 1534, 2041
Cfr42I CCGCGG 1 cut(s) 1073
CseI GACGC 3 cut(s) 423, 3027, 3186
Csp6I GTAC 8 cut(s) 1100, 1449, 1565, 1611, 1838, 2503, 2759, 2830
CviQI GTAC 8 cut(s) 1100, 1449, 1565, 1611, 1838, 2503, 2759, 2830
DraI TTTAAA 1 cut(s) 3226
DrdI GACNNNNNNGTC 2 cut(s) 433, 3056
DseDI GACNNNNNNGTC 2 cut(s) 433, 3056
EaeI YGGCCR 1 cut(s) 3087
Eam1104I CTCTTC 4 cut(s) 722, 948, 1031, 2447
EarI CTCTTC 4 cut(s) 722, 948, 1031, 2447
EciI GGCGGA 5 cut(s) 67, 73, 163, 265, 1071
Eco147I AGGCCT 1 cut(s) 146
Eco24I GRGCYC 1 cut(s) 1600
Eco31I GGTCTC 4 cut(s) 104, 1038, 1261, 2538
Eco32I GATATC 1 cut(s) 1498
Eco47I GGWCC 6 cut(s) 984, 1087, 1138, 1313, 1534, 2041
Eco57I CTGAAG 3 cut(s) 299, 1987, 3158
Eco72I CACGTG 1 cut(s) 539
Eco88I CYCGRG 1 cut(s) 3052
EcoNI CCTNNNNNAGG 1 cut(s) 1193
EcoO109I RGGNCCY 4 cut(s) 984, 1138, 1313, 1534
EcoRI GAATTC 2 cut(s) 2206, 2704
EcoRII CCWGG 7 cut(s) 1194, 1316, 1831, 2141, 2182, 2516, 2536
EcoRV GATATC 1 cut(s) 1498
EcoT38I GRGCYC 1 cut(s) 1600
Esp3I CGTCTC 1 cut(s) 220
FalI AAGNNNNNCTT 2 cut(s) 716, 748
FaqI GGGAC 5 cut(s) 372, 970, 1073, 1326, 2941
FauI CCCGC 2 cut(s) 134, 1065
FauNDI CATATG 2 cut(s) 604, 2563
FblI GTMKAC 1 cut(s) 2803
Fnu4HI GCNGC 8 cut(s) 45, 138, 177, 589, 1237, 2297, 2850, 3075
FokI GGATG 5 cut(s) 941, 1165, 1560, 2634, 3250
FriOI GRGCYC 1 cut(s) 1600
Fsp4HI GCNGC 8 cut(s) 45, 138, 177, 589, 1237, 2297, 2850, 3075
FspBI CTAG 4 cut(s) 1481, 1673, 1934, 1938
GlaI GCGC 1 cut(s) 473
GluI GCNGC 8 cut(s) 45, 138, 177, 589, 1237, 2297, 2850, 3075
GsaI CCCAGC 1 cut(s) 2904
GsuI CTGGAG 3 cut(s) 583, 2166, 2817
HaeII RGCGCY 1 cut(s) 475
HaeIII GGCC 4 cut(s) 146, 1076, 2516, 3089
HapII CCGG 4 cut(s) 305, 1085, 2617, 3153
HgaI GACGC 3 cut(s) 423, 3027, 3186
HhaI GCGC 1 cut(s) 474
Hin1I GRCGYC 1 cut(s) 434
Hin6I GCGC 1 cut(s) 472
HinP1I GCGC 1 cut(s) 472
HincII GTYRAC 2 cut(s) 259, 2274
HindII GTYRAC 2 cut(s) 259, 2274
HindIII AAGCTT 1 cut(s) 1404
HpaII CCGG 4 cut(s) 305, 1085, 2617, 3153
HphI GGTGA 9 cut(s) 58, 873, 1455, 1517, 1931, 2325, 2447, 2976, 3253
Hpy166II GTNNAC 8 cut(s) 259, 1707, 1838, 2274, 2592, 2609, 2804, 3176
Hpy8I GTNNAC 8 cut(s) 259, 1707, 1838, 2274, 2592, 2609, 2804, 3176
Hpy99I CGWCG 4 cut(s) 164, 338, 439, 1169
HpyCH4IV ACGT 5 cut(s) 538, 1130, 1451, 1543, 2877
HpyCH4V TGCA 8 cut(s) 887, 923, 1041, 1441, 1810, 2296, 2592, 2883
HpyF10VI GCNNNNNNNGC 6 cut(s) 41, 143, 310, 701, 884, 1223
HpySE526I ACGT 5 cut(s) 538, 1130, 1451, 1543, 2877
Hsp92I GRCGYC 1 cut(s) 434
HspAI GCGC 1 cut(s) 472
KflI GGGWCCC 1 cut(s) 1313
KspI CCGCGG 1 cut(s) 1073
LguI GCTCTTC 2 cut(s) 722, 948
LmnI GCTCC 9 cut(s) 310, 469, 604, 977, 1894, 2072, 2185, 2558, 2813
Lsp1109I GCAGC 5 cut(s) 600, 1248, 2308, 2836, 3061
LweI GCATC 6 cut(s) 865, 1204, 1931, 2044, 2122, 2232
MaeI CTAG 4 cut(s) 1481, 1673, 1934, 1938
MaeII ACGT 5 cut(s) 538, 1130, 1451, 1543, 2877
MaeIII GTNAC 2 cut(s) 3014, 3031
MfeI CAATTG 1 cut(s) 650
MflI RGATCY 6 cut(s) 451, 787, 1676, 2131, 2836, 2896
MhlI GDGCHC 4 cut(s) 536, 1281, 1600, 2594
MlsI TGGCCA 1 cut(s) 3089
MluNI TGGCCA 1 cut(s) 3089
MlyI GAGTC 3 cut(s) 336, 354, 3044
MmeI TCCRAC 9 cut(s) 120, 267, 357, 667, 1130, 1182, 1206, 1267, 2791
Mox20I TGGCCA 1 cut(s) 3089
MscI TGGCCA 1 cut(s) 3089
MslI CAYNNNNRTG 7 cut(s) 1572, 1860, 2021, 2416, 2475, 2553, 2891
Msp20I TGGCCA 1 cut(s) 3089
MspA1I CMGCKG 1 cut(s) 1072
MspI CCGG 4 cut(s) 305, 1085, 2617, 3153
MspR9I CCNGG 8 cut(s) 1196, 1318, 1833, 2143, 2184, 2518, 2538, 2618
MunI CAATTG 1 cut(s) 650
Mva1269I GAATGC 1 cut(s) 2007
MvaI CCWGG 7 cut(s) 1196, 1318, 1833, 2143, 2184, 2518, 2538
MvnI CGCG 3 cut(s) 35, 129, 1072
MwoI GCNNNNNNNGC 6 cut(s) 41, 143, 310, 701, 884, 1223
NciI CCSGG 1 cut(s) 2618
NdeI CATATG 2 cut(s) 604, 2563
NlaIV GGNNCC 9 cut(s) 423, 600, 986, 1089, 1140, 1314, 1315, 2865, 2898
NmeAIII GCCGAG 1 cut(s) 166
NspI RCATGY 5 cut(s) 1445, 1571, 2026, 2272, 3111
PaeR7I CTCGAG 1 cut(s) 3052
PagI TCATGA 1 cut(s) 3046
PaqCI CACCTGC 1 cut(s) 892
PceI AGGCCT 1 cut(s) 146
PciI ACATGT 4 cut(s) 1567, 2022, 2268, 3107
PciSI GCTCTTC 2 cut(s) 722, 948
PctI GAATGC 1 cut(s) 2007
PflFI GACNNNGTC 2 cut(s) 101, 350
PkrI GCNGC 8 cut(s) 46, 139, 178, 590, 1238, 2298, 2851, 3076
PleI GAGTC 3 cut(s) 335, 354, 3044
PmaCI CACGTG 1 cut(s) 539
PmlI CACGTG 1 cut(s) 539
PpsI GAGTC 3 cut(s) 335, 354, 3044
Ppu21I YACGTR 2 cut(s) 539, 1452
PpuMI RGGWCCY 4 cut(s) 984, 1138, 1313, 1534
PscI ACATGT 4 cut(s) 1567, 2022, 2268, 3107
PsiI TTATAA 1 cut(s) 1766
Psp5II RGGWCCY 4 cut(s) 984, 1138, 1313, 1534
Psp6I CCWGG 7 cut(s) 1194, 1316, 1831, 2141, 2182, 2516, 2536
PspCI CACGTG 1 cut(s) 539
PspFI CCCAGC 1 cut(s) 2900
PspGI CCWGG 7 cut(s) 1194, 1316, 1831, 2141, 2182, 2516, 2536
PspN4I GGNNCC 9 cut(s) 423, 600, 986, 1089, 1140, 1314, 1315, 2865, 2898
PspPI GGNCC 7 cut(s) 984, 1074, 1087, 1138, 1313, 1534, 2041
PspPPI RGGWCCY 4 cut(s) 984, 1138, 1313, 1534
PspXI VCTCGAGB 1 cut(s) 3052
PstI CTGCAG 1 cut(s) 889
PstNI CAGNNNCTG 1 cut(s) 1728
PsuI RGATCY 6 cut(s) 451, 787, 1676, 2131, 2836, 2896
PsyI GACNNNGTC 2 cut(s) 101, 350
RsaI GTAC 8 cut(s) 1101, 1450, 1566, 1612, 1839, 2504, 2760, 2831
RsaNI GTAC 8 cut(s) 1100, 1449, 1565, 1611, 1838, 2503, 2759, 2830
RseI CAYNNNNRTG 7 cut(s) 1572, 1860, 2021, 2416, 2475, 2553, 2891
SacII CCGCGG 1 cut(s) 1073
SapI GCTCTTC 2 cut(s) 722, 948
SatI GCNGC 8 cut(s) 45, 138, 177, 589, 1237, 2297, 2850, 3075
Sau96I GGNCC 7 cut(s) 984, 1074, 1087, 1138, 1313, 1534, 2041
ScaI AGTACT 1 cut(s) 1612
SchI GAGTC 3 cut(s) 336, 354, 3044
ScrFI CCNGG 8 cut(s) 1196, 1318, 1833, 2143, 2184, 2518, 2538, 2618
SduI GDGCHC 4 cut(s) 536, 1281, 1600, 2594
SfaNI GCATC 6 cut(s) 865, 1204, 1931, 2044, 2122, 2232
SfcI CTRYAG 1 cut(s) 885
Sfr274I CTCGAG 1 cut(s) 3052
Sfr303I CCGCGG 1 cut(s) 1073
SgrBI CCGCGG 1 cut(s) 1073
SinI GGWCC 6 cut(s) 984, 1087, 1138, 1313, 1534, 2041
SlaI CTCGAG 1 cut(s) 3052
SmiMI CAYNNNNRTG 7 cut(s) 1572, 1860, 2021, 2416, 2475, 2553, 2891
SmlI CTYRAG 5 cut(s) 182, 635, 2974, 3003, 3052
SmoI CTYRAG 5 cut(s) 182, 635, 2974, 3003, 3052
SseBI AGGCCT 1 cut(s) 146
SspI AATATT 1 cut(s) 1869
SspMI CTAG 4 cut(s) 1481, 1673, 1934, 1938
StuI AGGCCT 1 cut(s) 146
StyD4I CCNGG 8 cut(s) 1194, 1316, 1831, 2141, 2182, 2516, 2536, 2616
TaiI ACGT 5 cut(s) 541, 1133, 1454, 1546, 2880
TaqI TCGA 8 cut(s) 437, 512, 846, 1456, 1494, 2708, 3053, 3097
TaqII GACCGA 2 cut(s) 277, 2520
TatI WGTACW 5 cut(s) 1564, 1610, 1837, 2502, 2758
TauI GCSGC 3 cut(s) 47, 140, 179
TscAI CASTG 2 cut(s) 1705, 2599
TseI GCWGC 5 cut(s) 588, 1236, 2296, 2849, 3074
TspGWI ACGGA 3 cut(s) 202, 2293, 2565
TspRI CASTG 2 cut(s) 1705, 2599
Tth111I GACNNNGTC 2 cut(s) 101, 350
VneI GTGCAC 1 cut(s) 2590
VpaK11BI GGWCC 6 cut(s) 984, 1087, 1138, 1313, 1534, 2041
XagI CCTNNNNNAGG 1 cut(s) 1193
XapI RAATTY 5 cut(s) 1458, 2164, 2206, 2704, 2933
XceI RCATGY 5 cut(s) 1445, 1571, 2026, 2272, 3111
XcmI CCANNNNNNNNNTGG 1 cut(s) 1729
XhoI CTCGAG 1 cut(s) 3052
XmiI GTMKAC 1 cut(s) 2803
XspI CTAG 4 cut(s) 1481, 1673, 1934, 1938
ZrmI AGTACT 1 cut(s) 1612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.