Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0036676.1

Orthogroup ID

OG0006166

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1468

Gene Structure 1468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0036676.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

gaacacatggaactagagaaacgctaccgtgaactaactgatttactgtactacaagcaaacacaattagaaaccatggccagtgaaaaagctgctgcagagttccaattggagaaggaattgaagcgtctccaggaagcacaggtagaggcagaaagaagtagagtttcccgccgggcatcagcatcctgggaagaagacactgaaatgaaggcacttgagcctcttcccttgtatcaccgccatatggttggggcaaccatgcaggtaacctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000301 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0006810 GO:0006891 GO:0006996 GO:0007030 GO:0008150 GO:0009987 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0031090 GO:0031984 GO:0031985 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048193 GO:0051179 GO:0051234 GO:0071840 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Golgin_A5

Protein Analysis

91

Amino Acids

10.8

Weight (kDa)

5.42

Isoelectric Point (pI)

48.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19950 AT2G19950
fragaria_vesca	FvH4_1g05970 FvH4_1g05970 FvH4_1g05970
malus_domestica	MD02G1064300.v1.1 MD15G1195100.v1.1
prunus_persica	Prupe.7G221400_v2.0.a1 Prupe.7G221400_v2.0.a1 Prupe.7G221400_v2.0.a1 Prupe.7G221400_v2.0.a1
pyrus_communis	pycom02g05060 pycom15g17450
rosa_chinensis	RchiOBHm_Chr2g0091661
rosa_laevigata	RLG00000016241
rosa_multiflora	Rmu_sc0000897.1_g000010 Rmu_sc0036676.1_g000001 Rmu_sc0042722.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149820
rosa_rugosa	Rorug02G0019300 Rorug02G0019400 Rorug02G0019500
rosa_samantha	Rh2AG064500 Rh2BG063700 Rh2CG065400 Rh2DG063800
rosa_wichuraiana	Rw2G005600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	256
AciI	CCGC	2 cut(s)	172, 241
AcoI	YGGCCR	1 cut(s)	78
AfaI	GTAC	1 cut(s)	50
AfiI	CCNNNNNNNGG	1 cut(s)	247
AgsI	TTSAA	1 cut(s)	124
AjnI	CCWGG	2 cut(s)	132, 188
AluBI	AGCT	1 cut(s)	92
AluI	AGCT	1 cut(s)	92
Alw26I	GTCTC	1 cut(s)	134
AoxI	GGCC	1 cut(s)	78
ApeKI	GCWGC	2 cut(s)	92, 95
AsuC2I	CCSGG	1 cut(s)	176
AsuHPI	GGTGA	1 cut(s)	230
BalI	TGGCCA	1 cut(s)	80
BbsI	GAAGAC	1 cut(s)	204
BbvI	GCAGC	2 cut(s)	79, 82
BciT130I	CCWGG	2 cut(s)	134, 190
BcnI	CCSGG	1 cut(s)	176
BcoDI	GTCTC	1 cut(s)	134
BfaI	CTAG	1 cut(s)	14
BfmI	CTRYAG	1 cut(s)	96
BfuAI	ACCTGC	1 cut(s)	256
BisI	GCNGC	2 cut(s)	93, 96
BlsI	GCNGC	2 cut(s)	94, 97
Bme1390I	CCNGG	3 cut(s)	134, 176, 190
BmrFI	CCNGG	3 cut(s)	134, 176, 190
BmsI	GCATC	2 cut(s)	188, 194
BpiI	GAAGAC	1 cut(s)	204
BpmI	CTGGAG	1 cut(s)	116
BpuEI	CTTGAG	1 cut(s)	239
BpuMI	CCSGG	1 cut(s)	176
BsaJI	CCNNGG	2 cut(s)	75, 189
Bsc4I	CCNNNNNNNGG	1 cut(s)	247
Bse1I	ACTGG	1 cut(s)	81
BseBI	CCWGG	2 cut(s)	134, 190
BseDI	CCNNGG	2 cut(s)	75, 189
BseGI	GGATG	1 cut(s)	185
BseLI	CCNNNNNNNGG	1 cut(s)	247
BseNI	ACTGG	1 cut(s)	81
BseXI	GCAGC	2 cut(s)	79, 82
BshFI	GGCC	1 cut(s)	80
BsiSI	CCGG	1 cut(s)	175
BslI	CCNNNNNNNGG	1 cut(s)	247
BsmAI	GTCTC	1 cut(s)	134
BsmBI	CGTCTC	1 cut(s)	134
BsnI	GGCC	1 cut(s)	80
Bsp19I	CCATGG	1 cut(s)	75
BspACI	CCGC	2 cut(s)	172, 241
BspANI	GGCC	1 cut(s)	80
BspMAI	CTGCAG	1 cut(s)	100
BspMI	ACCTGC	1 cut(s)	256
BsrI	ACTGG	1 cut(s)	81
BssECI	CCNNGG	2 cut(s)	75, 189
BssT1I	CCWWGG	1 cut(s)	75
Bst2UI	CCWGG	2 cut(s)	134, 190
Bst4CI	ACNGT	2 cut(s)	29, 48
Bst6I	CTCTTC	1 cut(s)	231
BstDSI	CCRYGG	1 cut(s)	75
BstEII	GGTNACC	1 cut(s)	268
BstF5I	GGATG	1 cut(s)	185
BstMAI	GTCTC	1 cut(s)	134
BstNI	CCWGG	2 cut(s)	134, 190
BstPI	GGTNACC	1 cut(s)	268
BstSCI	CCNGG	3 cut(s)	132, 174, 188
BstSFI	CTRYAG	1 cut(s)	96
BstV1I	GCAGC	2 cut(s)	79, 82
BstV2I	GAAGAC	1 cut(s)	204
BstXI	CCANNNNNNTGG	1 cut(s)	251
BsuRI	GGCC	1 cut(s)	80
BtgI	CCRYGG	1 cut(s)	75
BtsCI	GGATG	1 cut(s)	185
BtsIMutI	CAGTG	2 cut(s)	88, 201
BveI	ACCTGC	1 cut(s)	256
CseI	GACGC	1 cut(s)	116
Csp6I	GTAC	1 cut(s)	49
CviAII	CATG	3 cut(s)	7, 76, 262
CviJI	RGCY	3 cut(s)	80, 92, 223
CviKI_1	RGCY	3 cut(s)	80, 92, 223
CviQI	GTAC	1 cut(s)	49
EaeI	YGGCCR	1 cut(s)	78
Eam1104I	CTCTTC	1 cut(s)	231
EarI	CTCTTC	1 cut(s)	231
Eco130I	CCWWGG	1 cut(s)	75
Eco91I	GGTNACC	1 cut(s)	268
EcoO65I	GGTNACC	1 cut(s)	268
EcoRII	CCWGG	2 cut(s)	132, 188
EcoT14I	CCWWGG	1 cut(s)	75
ErhI	CCWWGG	1 cut(s)	75
Esp3I	CGTCTC	1 cut(s)	134
FaeI	CATG	3 cut(s)	10, 79, 265
FaiI	YATR	5 cut(s)	8, 77, 246, 248, 263
FatI	CATG	3 cut(s)	6, 75, 261
FauI	CCCGC	1 cut(s)	179
FauNDI	CATATG	1 cut(s)	246
Fnu4HI	GCNGC	2 cut(s)	93, 96
FokI	GGATG	1 cut(s)	172
Fsp4HI	GCNGC	2 cut(s)	93, 96
FspBI	CTAG	1 cut(s)	14
GluI	GCNGC	2 cut(s)	93, 96
GsuI	CTGGAG	1 cut(s)	116
HaeIII	GGCC	1 cut(s)	80
HapII	CCGG	1 cut(s)	175
HgaI	GACGC	1 cut(s)	116
Hin1II	CATG	3 cut(s)	10, 79, 265
HpaII	CCGG	1 cut(s)	175
HphI	GGTGA	1 cut(s)	230
Hpy166II	GTNNAC	1 cut(s)	32
Hpy8I	GTNNAC	1 cut(s)	32
HpyAV	CCTTC	2 cut(s)	109, 205
HpyCH4III	ACNGT	2 cut(s)	29, 48
HpyCH4V	TGCA	2 cut(s)	98, 265
Hsp92II	CATG	3 cut(s)	10, 79, 265
LpnPI	CCDG	8 cut(s)	94, 119, 128, 146, 175, 188, 202, 251
Lsp1109I	GCAGC	2 cut(s)	79, 82
LweI	GCATC	2 cut(s)	188, 194
MaeI	CTAG	1 cut(s)	14
MaeIII	GTNAC	1 cut(s)	268
MboII	GAAGA	3 cut(s)	206, 209, 218
MfeI	CAATTG	1 cut(s)	107
MlsI	TGGCCA	1 cut(s)	80
MluCI	AATT	3 cut(s)	65, 107, 119
MluNI	TGGCCA	1 cut(s)	80
MnlI	CCTC	2 cut(s)	142, 234
Mox20I	TGGCCA	1 cut(s)	80
MscI	TGGCCA	1 cut(s)	80
MslI	CAYNNNNRTG	1 cut(s)	206
Msp20I	TGGCCA	1 cut(s)	80
MspI	CCGG	1 cut(s)	175
MspR9I	CCNGG	3 cut(s)	134, 176, 190
MunI	CAATTG	1 cut(s)	107
MvaI	CCWGG	2 cut(s)	134, 190
NciI	CCSGG	1 cut(s)	176
NcoI	CCATGG	1 cut(s)	75
NdeI	CATATG	1 cut(s)	246
NlaIII	CATG	3 cut(s)	10, 79, 265
PfoI	TCCNGGA	1 cut(s)	132
PkrI	GCNGC	2 cut(s)	94, 97
Psp6I	CCWGG	2 cut(s)	132, 188
PspEI	GGTNACC	1 cut(s)	268
PspGI	CCWGG	2 cut(s)	132, 188
PstI	CTGCAG	1 cut(s)	100
RsaI	GTAC	1 cut(s)	50
RsaNI	GTAC	1 cut(s)	49
RseI	CAYNNNNRTG	1 cut(s)	206
SatI	GCNGC	2 cut(s)	93, 96
ScrFI	CCNGG	3 cut(s)	134, 176, 190
SetI	ASST	4 cut(s)	94, 147, 270, 275
SfaNI	GCATC	2 cut(s)	188, 194
SfcI	CTRYAG	1 cut(s)	96
SmiMI	CAYNNNNRTG	1 cut(s)	206
SmlI	CTYRAG	1 cut(s)	218
SmoI	CTYRAG	1 cut(s)	218
Sse9I	AATT	3 cut(s)	65, 107, 119
SsiI	CCGC	2 cut(s)	172, 241
SspMI	CTAG	1 cut(s)	14
StyD4I	CCNGG	3 cut(s)	132, 174, 188
StyI	CCWWGG	1 cut(s)	75
TaaI	ACNGT	2 cut(s)	29, 48
TasI	AATT	3 cut(s)	65, 107, 119
TatI	WGTACW	1 cut(s)	48
TscAI	CASTG	2 cut(s)	88, 208
TseI	GCWGC	2 cut(s)	92, 95
TspDTI	ATGAA	1 cut(s)	224
TspRI	CASTG	2 cut(s)	88, 208
XspI	CTAG	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.