Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006166

Physical Location & Seq

Genomic Coordinates Reverse (-)

1584699 .. 1586509

Gene Structure 1811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0019300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGTTCACGTCGATCCATGTCCTTTGTTTATTTGCGCCGTTTCATTTCAACTGGCCTGCGTTTTACCTGGCATTCGCTCTCGCTTTTGCCACCACCTTGGGAGTAACTCTTTGTTACCATAGAAACCTTGCGCATAGGAGTTTCAGGCTTCCCAAGTTTCTCGAGTACTTGTTTGCCTATATGGCTGTTCTTTCGGCTCAGGTCTGTAAATTGATATGTAAGTACTTAACTCTTGTTTTGCTGGGCACTCCAATTGAGTGGGTGAGTACACACCGCTACCACCACCAATACACGGATACAGAGAACGATGTTCATAGCCCTCTCAAGGGTTTTTGGTTTAGTCACATGGGATGGATTCTCGATAGCAATAAGCGCTTCGGAAAATATGGAGGACTGAAGAATGTTGAAGATTTGAAAATGCAGCCATTCTATAGGTTTCTTCATCATACGTTTCTTCTACACTCGTTTATTCTTGGAGGAATTCTATATGCCCCTGGGTGGCCACATGGGTTTCCCTTCATTGTTTGGGGAATGGGAGAGAGGATGCTAGTTGTTTTCCACGGCACCATGCTAGAGAAGGATGGCACAACAATCACCACGCTTTCGAATACTCGGCTCGACAAGCCGGACAAGGCCTCGAATGGTGGCAGATTGACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000301 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0006810 GO:0006891 GO:0006996 GO:0007030 GO:0008150 GO:0009987 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0031090 GO:0031984 GO:0031985 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048193 GO:0051179 GO:0051234 GO:0071840 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Golgin_A5

Protein Analysis

219

Amino Acids

25.31

Weight (kDa)

9.28

Isoelectric Point (pI)

31.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19950 AT2G19950
fragaria_vesca	FvH4_1g05970 FvH4_1g05970 FvH4_1g05970
malus_domestica	MD02G1064300.v1.1 MD15G1195100.v1.1
prunus_persica	Prupe.7G221400_v2.0.a1 Prupe.7G221400_v2.0.a1 Prupe.7G221400_v2.0.a1 Prupe.7G221400_v2.0.a1
pyrus_communis	pycom02g05060 pycom15g17450
rosa_chinensis	RchiOBHm_Chr2g0091661
rosa_laevigata	RLG00000016241
rosa_multiflora	Rmu_sc0000897.1_g000010 Rmu_sc0036676.1_g000001 Rmu_sc0042722.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149820
rosa_rugosa	Rorug02G0019300 Rorug02G0019400 Rorug02G0019500
rosa_samantha	Rh2AG064500 Rh2BG063700 Rh2CG065400 Rh2DG063800
rosa_wichuraiana	Rw2G005600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	132
AccB1I	GGYRCC	1 cut(s)	563
AciI	CCGC	1 cut(s)	274
AclWI	GGATC	1 cut(s)	7
AcoI	YGGCCR	1 cut(s)	500
AcsI	RAATTY	1 cut(s)	480
AcuI	CTGAAG	1 cut(s)	416
AfaI	GTAC	3 cut(s)	167, 224, 268
AfeI	AGCGCT	1 cut(s)	374
AfiI	CCNNNNNNNGG	4 cut(s)	292, 325, 326, 498
AgsI	TTSAA	3 cut(s)	49, 407, 415
AjiI	CACGTC	2 cut(s)	9, 657
AjnI	CCWGG	2 cut(s)	66, 493
AlwI	GGATC	1 cut(s)	7
Ama87I	CYCGRG	1 cut(s)	161
Aor51HI	AGCGCT	1 cut(s)	374
AoxI	GGCC	3 cut(s)	53, 500, 633
ApeKI	GCWGC	1 cut(s)	421
ApoI	RAATTY	1 cut(s)	480
AspLEI	GCGC	3 cut(s)	37, 133, 375
AsuHPI	GGTGA	2 cut(s)	274, 586
AsuII	TTCGAA	1 cut(s)	605
AvaI	CYCGRG	1 cut(s)	161
BaeGI	GKGCMC	1 cut(s)	248
BalI	TGGCCA	1 cut(s)	502
BanI	GGYRCC	1 cut(s)	563
BbvI	GCAGC	1 cut(s)	433
BccI	CCATC	2 cut(s)	345, 575
BceAI	ACGGC	2 cut(s)	22, 577
BciT130I	CCWGG	2 cut(s)	68, 495
BciVI	GTATCC	1 cut(s)	289
BfaI	CTAG	2 cut(s)	548, 572
BfmI	CTRYAG	1 cut(s)	430
BfoI	RGCGCY	1 cut(s)	376
BfuI	GTATCC	1 cut(s)	289
BglI	GCCNNNNNGGC	1 cut(s)	182
BisI	GCNGC	1 cut(s)	422
BlsI	GCNGC	1 cut(s)	423
BmcAI	AGTACT	2 cut(s)	167, 224
Bme1390I	CCNGG	2 cut(s)	68, 495
BmeT110I	CYCGRG	1 cut(s)	161
BmgBI	CACGTC	2 cut(s)	9, 657
BmiI	GGNNCC	1 cut(s)	565
BmrFI	CCNGG	2 cut(s)	68, 495
BmsI	GCATC	1 cut(s)	534
Bpu10I	CCTNAGC	1 cut(s)	198
Bpu14I	TTCGAA	1 cut(s)	605
BpuEI	CTTGAG	1 cut(s)	308
BsaJI	CCNNGG	4 cut(s)	96, 493, 494, 559
Bsc4I	CCNNNNNNNGG	4 cut(s)	292, 325, 326, 498
Bse1I	ACTGG	1 cut(s)	56
BseBI	CCWGG	2 cut(s)	68, 495
BseDI	CCNNGG	4 cut(s)	96, 493, 494, 559
BseGI	GGATG	3 cut(s)	356, 549, 586
BseLI	CCNNNNNNNGG	4 cut(s)	292, 325, 326, 498
BseMII	CTCAG	1 cut(s)	212
BseNI	ACTGG	1 cut(s)	56
BseSI	GKGCMC	1 cut(s)	248
BseXI	GCAGC	1 cut(s)	433
BseYI	CCCAGC	1 cut(s)	241
BshFI	GGCC	3 cut(s)	55, 502, 635
BshNI	GGYRCC	1 cut(s)	563
BsiHKCI	CYCGRG	1 cut(s)	161
BsiSI	CCGG	1 cut(s)	626
BslI	CCNNNNNNNGG	4 cut(s)	292, 325, 326, 498
BsmI	GAATGC	1 cut(s)	71
BsnI	GGCC	3 cut(s)	55, 502, 635
BsoBI	CYCGRG	1 cut(s)	161
Bsp119I	TTCGAA	1 cut(s)	605
Bsp1286I	GDGCHC	1 cut(s)	248
Bsp143I	GATC	1 cut(s)	12
BspACI	CCGC	1 cut(s)	274
BspANI	GGCC	3 cut(s)	55, 502, 635
BspCNI	CTCAG	1 cut(s)	211
BspLI	GGNNCC	1 cut(s)	565
BspPI	GGATC	1 cut(s)	7
BspT104I	TTCGAA	1 cut(s)	605
BspT107I	GGYRCC	1 cut(s)	563
BsrI	ACTGG	1 cut(s)	56
BssECI	CCNNGG	4 cut(s)	96, 493, 494, 559
BssMI	GATC	1 cut(s)	12
BssT1I	CCWWGG	1 cut(s)	96
Bst2UI	CCWGG	2 cut(s)	68, 495
BstBI	TTCGAA	1 cut(s)	605
BstC8I	GCNNGC	1 cut(s)	57
BstDEI	CTNAG	1 cut(s)	198
BstDSI	CCRYGG	1 cut(s)	559
BstF5I	GGATG	3 cut(s)	356, 549, 586
BstH2I	RGCGCY	1 cut(s)	376
BstHHI	GCGC	3 cut(s)	37, 133, 375
BstKTI	GATC	1 cut(s)	15
BstMBI	GATC	1 cut(s)	12
BstMWI	GCNNNNNNNGC	3 cut(s)	182, 372, 622
BstNI	CCWGG	2 cut(s)	68, 495
BstSCI	CCNGG	2 cut(s)	66, 493
BstSFI	CTRYAG	1 cut(s)	430
BstSLI	GKGCMC	1 cut(s)	248
BstV1I	GCAGC	1 cut(s)	433
BstXI	CCANNNNNNTGG	2 cut(s)	97, 258
BsuI	GTATCC	1 cut(s)	289
BsuRI	GGCC	3 cut(s)	55, 502, 635
BtgI	CCRYGG	1 cut(s)	559
BtrI	CACGTC	2 cut(s)	9, 657
BtsCI	GGATG	3 cut(s)	356, 549, 586
Cac8I	GCNNGC	1 cut(s)	57
CfoI	GCGC	3 cut(s)	37, 133, 375
Csp6I	GTAC	3 cut(s)	166, 223, 267
CviAII	CATG	4 cut(s)	17, 346, 506, 568
CviQI	GTAC	3 cut(s)	166, 223, 267
DdeI	CTNAG	1 cut(s)	198
DpnI	GATC	1 cut(s)	14
DpnII	GATC	1 cut(s)	12
EaeI	YGGCCR	1 cut(s)	500
Eco130I	CCWWGG	1 cut(s)	96
Eco147I	AGGCCT	1 cut(s)	635
Eco47III	AGCGCT	1 cut(s)	374
Eco57I	CTGAAG	1 cut(s)	416
Eco88I	CYCGRG	1 cut(s)	161
EcoRI	GAATTC	1 cut(s)	480
EcoRII	CCWGG	2 cut(s)	66, 493
EcoT14I	CCWWGG	1 cut(s)	96
ErhI	CCWWGG	1 cut(s)	96
FaeI	CATG	4 cut(s)	20, 349, 509, 571
FatI	CATG	4 cut(s)	16, 345, 505, 567
Fnu4HI	GCNGC	1 cut(s)	422
FokI	GGATG	3 cut(s)	363, 556, 593
Fsp4HI	GCNGC	1 cut(s)	422
FspBI	CTAG	2 cut(s)	548, 572
FspI	TGCGCA	1 cut(s)	132
GlaI	GCGC	3 cut(s)	36, 132, 374
GluI	GCNGC	1 cut(s)	422
GsaI	CCCAGC	1 cut(s)	245
HaeII	RGCGCY	1 cut(s)	376
HaeIII	GGCC	3 cut(s)	55, 502, 635
HapII	CCGG	1 cut(s)	626
HhaI	GCGC	3 cut(s)	37, 133, 375
Hin1II	CATG	4 cut(s)	20, 349, 509, 571
Hin6I	GCGC	3 cut(s)	35, 131, 373
HinP1I	GCGC	3 cut(s)	35, 131, 373
HinfI	GANTC	1 cut(s)	355
HpaII	CCGG	1 cut(s)	626
HphI	GGTGA	2 cut(s)	274, 586
Hpy166II	GTNNAC	2 cut(s)	6, 269
Hpy188I	TCNGA	1 cut(s)	380
Hpy188III	TCNNGA	2 cut(s)	161, 359
Hpy8I	GTNNAC	2 cut(s)	6, 269
Hpy99I	CGWCG	1 cut(s)	13
HpyAV	CCTTC	2 cut(s)	526, 571
HpyCH4IV	ACGT	3 cut(s)	8, 449, 656
HpyCH4V	TGCA	1 cut(s)	421
HpyF10VI	GCNNNNNNNGC	3 cut(s)	182, 372, 622
HpyF3I	CTNAG	1 cut(s)	198
HpySE526I	ACGT	3 cut(s)	8, 449, 656
Hsp92II	CATG	4 cut(s)	20, 349, 509, 571
HspAI	GCGC	3 cut(s)	35, 131, 373
Kzo9I	GATC	1 cut(s)	12
Lsp1109I	GCAGC	1 cut(s)	433
LweI	GCATC	1 cut(s)	534
MaeI	CTAG	2 cut(s)	548, 572
MaeII	ACGT	3 cut(s)	8, 449, 656
MaeIII	GTNAC	3 cut(s)	103, 113, 341
MalI	GATC	1 cut(s)	14
MboI	GATC	1 cut(s)	12
MboII	GAAGA	4 cut(s)	409, 419, 431, 446
MfeI	CAATTG	1 cut(s)	252
MhlI	GDGCHC	1 cut(s)	248
MlsI	TGGCCA	1 cut(s)	502
MluCI	AATT	3 cut(s)	209, 252, 480
MluNI	TGGCCA	1 cut(s)	502
MnlI	CCTC	5 cut(s)	330, 383, 470, 534, 646
Mox20I	TGGCCA	1 cut(s)	502
MscI	TGGCCA	1 cut(s)	502
MseI	TTAA	1 cut(s)	227
Msp20I	TGGCCA	1 cut(s)	502
MspI	CCGG	1 cut(s)	626
MspR9I	CCNGG	2 cut(s)	68, 495
MunI	CAATTG	1 cut(s)	252
Mva1269I	GAATGC	1 cut(s)	71
MvaI	CCWGG	2 cut(s)	68, 495
MwoI	GCNNNNNNNGC	3 cut(s)	182, 372, 622
NdeII	GATC	1 cut(s)	12
NlaIII	CATG	4 cut(s)	20, 349, 509, 571
NlaIV	GGNNCC	1 cut(s)	565
NmeAIII	GCCGAG	1 cut(s)	592
NmuCI	GTSAC	1 cut(s)	341
NsbI	TGCGCA	1 cut(s)	132
NspV	TTCGAA	1 cut(s)	605
PaeR7I	CTCGAG	1 cut(s)	161
PasI	CCCWGGG	1 cut(s)	494
PceI	AGGCCT	1 cut(s)	635
PctI	GAATGC	1 cut(s)	71
PfeI	GAWTC	1 cut(s)	355
PkrI	GCNGC	1 cut(s)	423
Psp6I	CCWGG	2 cut(s)	66, 493
PspFI	CCCAGC	1 cut(s)	241
PspGI	CCWGG	2 cut(s)	66, 493
PspN4I	GGNNCC	1 cut(s)	565
RsaI	GTAC	3 cut(s)	167, 224, 268
RsaNI	GTAC	3 cut(s)	166, 223, 267
SaqAI	TTAA	1 cut(s)	227
SatI	GCNGC	1 cut(s)	422
Sau3AI	GATC	1 cut(s)	12
ScaI	AGTACT	2 cut(s)	167, 224
ScrFI	CCNGG	2 cut(s)	68, 495
SduI	GDGCHC	1 cut(s)	248
SetI	ASST	8 cut(s)	11, 69, 98, 129, 204, 437, 452, 659
SfaNI	GCATC	1 cut(s)	534
SfcI	CTRYAG	1 cut(s)	430
Sfr274I	CTCGAG	1 cut(s)	161
SfuI	TTCGAA	1 cut(s)	605
SlaI	CTCGAG	1 cut(s)	161
SmlI	CTYRAG	2 cut(s)	161, 323
SmoI	CTYRAG	2 cut(s)	161, 323
Sse9I	AATT	3 cut(s)	209, 252, 480
SseBI	AGGCCT	1 cut(s)	635
SsiI	CCGC	1 cut(s)	274
SspMI	CTAG	2 cut(s)	548, 572
StuI	AGGCCT	1 cut(s)	635
StyD4I	CCNGG	2 cut(s)	66, 493
StyI	CCWWGG	1 cut(s)	96
TaiI	ACGT	3 cut(s)	11, 452, 659
TaqI	TCGA	6 cut(s)	11, 162, 360, 605, 618, 638
TasI	AATT	3 cut(s)	209, 252, 480
TatI	WGTACW	3 cut(s)	165, 222, 266
TfiI	GAWTC	1 cut(s)	355
Tru1I	TTAA	1 cut(s)	227
Tru9I	TTAA	1 cut(s)	227
TseFI	GTSAC	1 cut(s)	341
TseI	GCWGC	1 cut(s)	421
Tsp45I	GTSAC	1 cut(s)	341
TspDTI	ATGAA	4 cut(s)	32, 302, 431, 508
TspGWI	ACGGA	1 cut(s)	308
XapI	RAATTY	1 cut(s)	480
XhoI	CTCGAG	1 cut(s)	161
XspI	CTAG	2 cut(s)	548, 572
ZrmI	AGTACT	2 cut(s)	167, 224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.