Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042722.1

Orthogroup ID

OG0006166

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1041

Gene Structure 1041 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042722.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 617 bp

acgagcagcaacaggatcttgagaaagactccacacctagcattcctataacagagacaccaggaattggagtcagtgaaacggatgctggtcaactggaagcttcaccaattctcactgatagggaatctgccacatcaacttcaaatggtgagcttgtgaatgagaatgccgcagttggtcgggaagaacatcctttgccgttaattgtcaaagaagttgaggttgtggatgaaaataatcaagttcagtcggttgatgttggccaagataaaagatccaaagatgcagatgttcctccaacccttgtccaagagagatcgcagtctatagctactgatgtccccagtaacagaaaaaatcagtcggaagttgctgatggcaacgaggaaccagtccttgagagaagtacgcaacttgagcataaagctggtagctctccctcaaaagtaccggaacaggatcaacttgaggaggctcaaggattgcttaaaacggctgtttccactggtcagtctaaagaagcaaggttagcgagggtttgtgccggactttcatcccgtcttcaagaatacaaatctgagaatgcacagctagaggagcttcttgtgtcagag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000301 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0006810 GO:0006891 GO:0006996 GO:0007030 GO:0008150 GO:0009987 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0031090 GO:0031984 GO:0031985 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048193 GO:0051179 GO:0051234 GO:0071840 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Golgin_A5

Protein Analysis

205

Amino Acids

22.12

Weight (kDa)

4.41

Isoelectric Point (pI)

59.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19950 AT2G19950
fragaria_vesca	FvH4_1g05970 FvH4_1g05970 FvH4_1g05970
malus_domestica	MD02G1064300.v1.1 MD15G1195100.v1.1
prunus_persica	Prupe.7G221400_v2.0.a1 Prupe.7G221400_v2.0.a1 Prupe.7G221400_v2.0.a1 Prupe.7G221400_v2.0.a1
pyrus_communis	pycom02g05060 pycom15g17450
rosa_chinensis	RchiOBHm_Chr2g0091661
rosa_laevigata	RLG00000016241
rosa_multiflora	Rmu_sc0000897.1_g000010 Rmu_sc0036676.1_g000001 Rmu_sc0042722.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149820
rosa_rugosa	Rorug02G0019300 Rorug02G0019400 Rorug02G0019500
rosa_samantha	Rh2AG064500 Rh2BG063700 Rh2CG065400 Rh2DG063800
rosa_wichuraiana	Rw2G005600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	67
AciI	CCGC	1 cut(s)	173
AclWI	GGATC	3 cut(s)	23, 272, 470
AcoI	YGGCCR	1 cut(s)	264
AfaI	GTAC	2 cut(s)	411, 452
AfiI	CCNNNNNNNGG	1 cut(s)	67
AgsI	TTSAA	2 cut(s)	146, 568
AjnI	CCWGG	1 cut(s)	60
AluBI	AGCT	7 cut(s)	103, 156, 334, 430, 437, 594, 603
AluI	AGCT	7 cut(s)	103, 156, 334, 430, 437, 594, 603
Alw26I	GTCTC	1 cut(s)	49
AlwI	GGATC	3 cut(s)	23, 272, 470
AoxI	GGCC	1 cut(s)	264
ApeKI	GCWGC	1 cut(s)	6
AsuHPI	GGTGA	2 cut(s)	98, 163
BalI	TGGCCA	1 cut(s)	266
BbsI	GAAGAC	1 cut(s)	556
BbvI	GCAGC	1 cut(s)	18
BccI	CCATC	1 cut(s)	373
BceAI	ACGGC	2 cut(s)	186, 512
BciT130I	CCWGG	1 cut(s)	62
BcoDI	GTCTC	1 cut(s)	49
BfaI	CTAG	2 cut(s)	38, 595
BfmI	CTRYAG	1 cut(s)	329
BisI	GCNGC	2 cut(s)	7, 173
BlsI	GCNGC	2 cut(s)	8, 174
Bme1390I	CCNGG	1 cut(s)	62
BmiI	GGNNCC	1 cut(s)	392
BmrFI	CCNGG	1 cut(s)	62
BmrI	ACTGGG	1 cut(s)	341
BmsI	GCATC	2 cut(s)	75, 276
BmuI	ACTGGG	1 cut(s)	341
BpiI	GAAGAC	1 cut(s)	556
BplI	GAGNNNNNCTC	2 cut(s)	13, 45
BpuEI	CTTGAG	5 cut(s)	40, 421, 439, 464, 490
BsaWI	WCCGGW	1 cut(s)	453
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
Bse1I	ACTGG	4 cut(s)	101, 347, 394, 513
BseBI	CCWGG	1 cut(s)	62
BseGI	GGATG	4 cut(s)	90, 192, 237, 556
BseLI	CCNNNNNNNGG	1 cut(s)	67
BseMII	CTCAG	1 cut(s)	572
BseNI	ACTGG	4 cut(s)	101, 347, 394, 513
BseRI	GAGGAG	2 cut(s)	487, 613
BseXI	GCAGC	1 cut(s)	18
BshFI	GGCC	1 cut(s)	266
BsiSI	CCGG	2 cut(s)	454, 548
BslFI	GGGAC	1 cut(s)	328
BslI	CCNNNNNNNGG	1 cut(s)	67
BsmAI	GTCTC	1 cut(s)	49
BsmFI	GGGAC	1 cut(s)	328
BsmI	GAATGC	3 cut(s)	41, 174, 591
BsnI	GGCC	1 cut(s)	266
Bsp143I	GATC	4 cut(s)	15, 277, 319, 462
BspACI	CCGC	1 cut(s)	173
BspANI	GGCC	1 cut(s)	266
BspCNI	CTCAG	1 cut(s)	573
BspLI	GGNNCC	1 cut(s)	392
BspPI	GGATC	3 cut(s)	23, 272, 470
BsrI	ACTGG	4 cut(s)	101, 347, 394, 513
BssMI	GATC	4 cut(s)	15, 277, 319, 462
Bst2UI	CCWGG	1 cut(s)	62
BstDEI	CTNAG	1 cut(s)	581
BstF5I	GGATG	4 cut(s)	90, 192, 237, 556
BstKTI	GATC	4 cut(s)	18, 280, 322, 465
BstMAI	GTCTC	1 cut(s)	49
BstMBI	GATC	4 cut(s)	15, 277, 319, 462
BstMWI	GCNNNNNNNGC	3 cut(s)	420, 532, 600
BstNI	CCWGG	1 cut(s)	62
BstSCI	CCNGG	1 cut(s)	60
BstSFI	CTRYAG	1 cut(s)	329
BstV1I	GCAGC	1 cut(s)	18
BstV2I	GAAGAC	1 cut(s)	556
BstX2I	RGATCY	2 cut(s)	15, 277
BstYI	RGATCY	2 cut(s)	15, 277
BsuRI	GGCC	1 cut(s)	266
BtsCI	GGATG	4 cut(s)	90, 192, 237, 556
BtsIMutI	CAGTG	3 cut(s)	81, 116, 506
Csp6I	GTAC	2 cut(s)	410, 451
CviQI	GTAC	2 cut(s)	410, 451
DdeI	CTNAG	1 cut(s)	581
DpnI	GATC	4 cut(s)	17, 279, 321, 464
DpnII	GATC	4 cut(s)	15, 277, 319, 462
EaeI	YGGCCR	1 cut(s)	264
EcoRII	CCWGG	1 cut(s)	60
FaiI	YATR	3 cut(s)	49, 331, 425
FalI	AAGNNNNNCTT	2 cut(s)	473, 505
FaqI	GGGAC	1 cut(s)	328
Fnu4HI	GCNGC	2 cut(s)	7, 173
FokI	GGATG	4 cut(s)	97, 179, 244, 543
Fsp4HI	GCNGC	2 cut(s)	7, 173
FspBI	CTAG	2 cut(s)	38, 595
GluI	GCNGC	2 cut(s)	7, 173
HaeIII	GGCC	1 cut(s)	266
HapII	CCGG	2 cut(s)	454, 548
HincII	GTYRAC	1 cut(s)	94
HindII	GTYRAC	1 cut(s)	94
HindIII	AAGCTT	1 cut(s)	101
HinfI	GANTC	3 cut(s)	28, 71, 127
HpaII	CCGG	2 cut(s)	454, 548
HphI	GGTGA	2 cut(s)	98, 163
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	3 cut(s)	369, 582, 615
Hpy188III	TCNNGA	3 cut(s)	19, 184, 568
Hpy8I	GTNNAC	1 cut(s)	94
HpyCH4V	TGCA	2 cut(s)	289, 589
HpyF10VI	GCNNNNNNNGC	3 cut(s)	420, 532, 600
HpyF3I	CTNAG	1 cut(s)	581
Kzo9I	GATC	4 cut(s)	15, 277, 319, 462
LmnI	GCTCC	1 cut(s)	600
Lsp1109I	GCAGC	1 cut(s)	18
LweI	GCATC	2 cut(s)	75, 276
MaeI	CTAG	2 cut(s)	38, 595
MaeIII	GTNAC	1 cut(s)	349
MalI	GATC	4 cut(s)	17, 279, 321, 464
MboI	GATC	4 cut(s)	15, 277, 319, 462
MboII	GAAGA	2 cut(s)	199, 556
MflI	RGATCY	2 cut(s)	15, 277
MlsI	TGGCCA	1 cut(s)	266
MluCI	AATT	3 cut(s)	65, 110, 206
MluNI	TGGCCA	1 cut(s)	266
MlyI	GAGTC	2 cut(s)	22, 80
MmeI	TCCRAC	2 cut(s)	325, 347
MnlI	CCTC	8 cut(s)	216, 308, 381, 453, 465, 468, 530, 591
Mox20I	TGGCCA	1 cut(s)	266
MscI	TGGCCA	1 cut(s)	266
MseI	TTAA	2 cut(s)	205, 491
Msp20I	TGGCCA	1 cut(s)	266
MspI	CCGG	2 cut(s)	454, 548
MspR9I	CCNGG	1 cut(s)	62
Mva1269I	GAATGC	3 cut(s)	41, 174, 591
MvaI	CCWGG	1 cut(s)	62
MwoI	GCNNNNNNNGC	3 cut(s)	420, 532, 600
NdeII	GATC	4 cut(s)	15, 277, 319, 462
NlaIV	GGNNCC	1 cut(s)	392
PctI	GAATGC	3 cut(s)	41, 174, 591
PfeI	GAWTC	1 cut(s)	127
PflMI	CCANNNNNTGG	1 cut(s)	67
PkrI	GCNGC	2 cut(s)	8, 174
PleI	GAGTC	2 cut(s)	22, 79
PpsI	GAGTC	2 cut(s)	22, 79
Psp6I	CCWGG	1 cut(s)	60
PspGI	CCWGG	1 cut(s)	60
PspN4I	GGNNCC	1 cut(s)	392
PsuI	RGATCY	2 cut(s)	15, 277
RsaI	GTAC	2 cut(s)	411, 452
RsaNI	GTAC	2 cut(s)	410, 451
SaqAI	TTAA	2 cut(s)	205, 491
SatI	GCNGC	2 cut(s)	7, 173
Sau3AI	GATC	4 cut(s)	15, 277, 319, 462
SchI	GAGTC	2 cut(s)	22, 80
ScrFI	CCNGG	1 cut(s)	62
SfaNI	GCATC	2 cut(s)	75, 276
SfcI	CTRYAG	1 cut(s)	329
SmlI	CTYRAG	5 cut(s)	19, 400, 418, 469, 479
SmoI	CTYRAG	5 cut(s)	19, 400, 418, 469, 479
Sse9I	AATT	3 cut(s)	65, 110, 206
SsiI	CCGC	1 cut(s)	173
SspMI	CTAG	2 cut(s)	38, 595
StyD4I	CCNGG	1 cut(s)	60
TasI	AATT	3 cut(s)	65, 110, 206
TauI	GCSGC	1 cut(s)	175
TfiI	GAWTC	1 cut(s)	127
Tru1I	TTAA	2 cut(s)	205, 491
Tru9I	TTAA	2 cut(s)	205, 491
TscAI	CASTG	3 cut(s)	81, 123, 513
TseI	GCWGC	1 cut(s)	6
TspDTI	ATGAA	2 cut(s)	248, 545
TspGWI	ACGGA	1 cut(s)	97
TspRI	CASTG	3 cut(s)	81, 123, 513
Van91I	CCANNNNNTGG	1 cut(s)	67
XspI	CTAG	2 cut(s)	38, 595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.