Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006166

Physical Location & Seq

Genomic Coordinates Reverse (-)

1603310 .. 1604513

Gene Structure 1204 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0019500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGACTGGTTCGCATGGCTGTCGAAAACCAGCCTTGAACCAAGCCTTGTCTATGAGTACGGCATCATCTTCTCTCGCAACGAGCTTCAAATGGAGGACGTTGCTTTCTTTAACCATGAGTTCCTGCTGAGCATGGGAGTTTCTGTGGCCAAGCACAGGCTAGAGATACTCAAGCTTGCCAAGAAGCAAAACGAGGGTGGCGGTGGTGGTCACCGCCACCACCCAGGGTCAATTTCAAGGCTCGGCTGGGCGCTCATCAAAACCAAGAAGTGTTTCAGCAAGTACTTTACAAGATTGGCTTTCCAAGAGAACGACATGTCATCGTCCCCCAGGCATGTAGCTGATCAGCCAGAGAAGTATCAAGAGCATTGGAGAGGAAGTCTGTCGAAGCCAAAGGGTCATGAGGAGGTCAAAACTCGGAGCATTGCGCTATCGGGGCCGTTGGATATGAGGACTCATGAGAGGTTGATGATGGTCCCTAACCCTAGGAGCTTGAAGCTATCAGGACCCTTAGACTCAAAGGTCAATGAGAGGCTCATGTACACAGCAAATAGGAGCCCTAGGCTCACTTCAGGTCCTATGGTGACCGACAAGCTAATGGTTGCAGCAAATAGGAGCCCCAAGGCATCCGGACCGTACGATGGACGATCATATGATCGGCTGATGGTGACGAAGAATAGGAGCCCGAGGCTGTCCGGGCCGCTTGATGGAAAAGTCACTCCATATGAGAAGGGAAGGGTGGACGTTGATTTTGATGACCATTCACTTTGGACTGCTATGTTTCAGGATATGAAACCCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000301 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0006810 GO:0006891 GO:0006996 GO:0007030 GO:0008150 GO:0009987 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0031090 GO:0031984 GO:0031985 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048193 GO:0051179 GO:0051234 GO:0071840 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Golgin_A5

Protein Analysis

267

Amino Acids

30.41

Weight (kDa)

9.66

Isoelectric Point (pI)

38.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19950 AT2G19950
fragaria_vesca	FvH4_1g05970 FvH4_1g05970 FvH4_1g05970
malus_domestica	MD02G1064300.v1.1 MD15G1195100.v1.1
prunus_persica	Prupe.7G221400_v2.0.a1 Prupe.7G221400_v2.0.a1 Prupe.7G221400_v2.0.a1 Prupe.7G221400_v2.0.a1
pyrus_communis	pycom02g05060 pycom15g17450
rosa_chinensis	RchiOBHm_Chr2g0091661
rosa_laevigata	RLG00000016241
rosa_multiflora	Rmu_sc0000897.1_g000010 Rmu_sc0036676.1_g000001 Rmu_sc0042722.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149820
rosa_rugosa	Rorug02G0019300 Rorug02G0019400 Rorug02G0019500
rosa_samantha	Rh2AG064500 Rh2BG063700 Rh2CG065400 Rh2DG063800
rosa_wichuraiana	Rw2G005600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	521
AccIII	TCCGGA	1 cut(s)	629
AciI	CCGC	3 cut(s)	201, 214, 701
AcoI	YGGCCR	1 cut(s)	147
AcuI	CTGAAG	1 cut(s)	555
AfaI	GTAC	4 cut(s)	59, 284, 542, 638
AfiI	CCNNNNNNNGG	3 cut(s)	156, 641, 707
AflIII	ACRYGT	1 cut(s)	315
AgsI	TTSAA	4 cut(s)	38, 89, 237, 496
AjnI	CCWGG	2 cut(s)	223, 329
AjuI	GAANNNNNNNTTGG	2 cut(s)	257, 289
AluBI	AGCT	6 cut(s)	85, 175, 341, 492, 499, 595
AluI	AGCT	6 cut(s)	85, 175, 341, 492, 499, 595
Ama87I	CYCGRG	1 cut(s)	685
Aor13HI	TCCGGA	1 cut(s)	629
AoxI	GGCC	3 cut(s)	147, 437, 698
ApeKI	GCWGC	1 cut(s)	605
ArsI	GACNNNNNNTTYG	2 cut(s)	734, 766
Asp700I	GAANNNNTTC	1 cut(s)	272
AspA2I	CCTAGG	2 cut(s)	485, 560
AspLEI	GCGC	2 cut(s)	253, 430
AspS9I	GGNCC	6 cut(s)	437, 475, 506, 575, 632, 698
AsuC2I	CCSGG	1 cut(s)	697
AsuHPI	GGTGA	3 cut(s)	203, 595, 679
AvaI	CYCGRG	1 cut(s)	685
AvaII	GGWCC	4 cut(s)	475, 506, 575, 632
AvrII	CCTAGG	2 cut(s)	485, 560
BalI	TGGCCA	1 cut(s)	149
BanII	GRGCYC	3 cut(s)	560, 620, 686
BbvI	GCAGC	1 cut(s)	617
BccI	CCATC	4 cut(s)	466, 635, 658, 701
BceAI	ACGGC	2 cut(s)	76, 424
BcgI	CGANNNNNNTGC	1 cut(s)	37
BciT130I	CCWGG	2 cut(s)	225, 331
BclI	TGATCA	1 cut(s)	343
BcnI	CCSGG	1 cut(s)	697
BfaI	CTAG	3 cut(s)	161, 486, 561
BfoI	RGCGCY	1 cut(s)	254
BisI	GCNGC	2 cut(s)	606, 701
BlnI	CCTAGG	2 cut(s)	485, 560
BlpI	GCTNAGC	1 cut(s)	128
BlsI	GCNGC	2 cut(s)	607, 702
BmcAI	AGTACT	1 cut(s)	284
Bme1390I	CCNGG	3 cut(s)	225, 331, 697
Bme18I	GGWCC	4 cut(s)	475, 506, 575, 632
BmeT110I	CYCGRG	1 cut(s)	685
BmgT120I	GGNCC	6 cut(s)	437, 475, 506, 575, 632, 698
BmiI	GGNNCC	6 cut(s)	438, 477, 508, 557, 617, 683
BmrFI	CCNGG	3 cut(s)	225, 331, 697
BmsI	GCATC	2 cut(s)	72, 635
Bpu1102I	GCTNAGC	1 cut(s)	128
BpuEI	CTTGAG	1 cut(s)	155
BpuMI	CCSGG	1 cut(s)	697
BsaJI	CCNNGG	7 cut(s)	223, 224, 329, 485, 560, 621, 686
BsaWI	WCCGGW	1 cut(s)	629
BsaXI	ACNNNNNCTCC	4 cut(s)	129, 159, 364, 394
Bsc4I	CCNNNNNNNGG	3 cut(s)	156, 641, 707
Bse1I	ACTGG	1 cut(s)	11
Bse3DI	GCAATG	1 cut(s)	423
BseAI	TCCGGA	1 cut(s)	629
BseBI	CCWGG	2 cut(s)	225, 331
BseDI	CCNNGG	7 cut(s)	223, 224, 329, 485, 560, 621, 686
BseGI	GGATG	1 cut(s)	626
BseLI	CCNNNNNNNGG	3 cut(s)	156, 641, 707
BseMI	GCAATG	1 cut(s)	423
BseMII	CTCAG	1 cut(s)	119
BseNI	ACTGG	1 cut(s)	11
BseRI	GAGGAG	1 cut(s)	419
BseXI	GCAGC	1 cut(s)	617
BseYI	CCCAGC	1 cut(s)	246
BshFI	GGCC	3 cut(s)	149, 439, 700
BsiHKCI	CYCGRG	1 cut(s)	685
BsiSI	CCGG	2 cut(s)	630, 696
BsiWI	CGTACG	1 cut(s)	636
BslFI	GGGAC	2 cut(s)	310, 461
BslI	CCNNNNNNNGG	3 cut(s)	156, 641, 707
BsmFI	GGGAC	2 cut(s)	310, 461
BsnI	GGCC	3 cut(s)	149, 439, 700
BsoBI	CYCGRG	1 cut(s)	685
Bsp1286I	GDGCHC	3 cut(s)	560, 620, 686
Bsp13I	TCCGGA	1 cut(s)	629
Bsp1407I	TGTACA	1 cut(s)	540
Bsp143I	GATC	3 cut(s)	343, 647, 655
Bsp1720I	GCTNAGC	1 cut(s)	128
BspACI	CCGC	3 cut(s)	201, 214, 701
BspANI	GGCC	3 cut(s)	149, 439, 700
BspCNI	CTCAG	1 cut(s)	120
BspEI	TCCGGA	1 cut(s)	629
BspHI	TCATGA	2 cut(s)	400, 457
BspLI	GGNNCC	6 cut(s)	438, 477, 508, 557, 617, 683
BsrDI	GCAATG	1 cut(s)	423
BsrGI	TGTACA	1 cut(s)	540
BsrI	ACTGG	1 cut(s)	11
BssECI	CCNNGG	7 cut(s)	223, 224, 329, 485, 560, 621, 686
BssMI	GATC	3 cut(s)	343, 647, 655
BssT1I	CCWWGG	3 cut(s)	485, 560, 621
Bst2UI	CCWGG	2 cut(s)	225, 331
Bst4CI	ACNGT	1 cut(s)	636
BstAUI	TGTACA	1 cut(s)	540
BstC8I	GCNNGC	1 cut(s)	177
BstDEI	CTNAG	2 cut(s)	128, 511
BstEII	GGTNACC	2 cut(s)	209, 583
BstF5I	GGATG	1 cut(s)	626
BstH2I	RGCGCY	1 cut(s)	254
BstHHI	GCGC	2 cut(s)	253, 430
BstKTI	GATC	3 cut(s)	346, 650, 658
BstMBI	GATC	3 cut(s)	343, 647, 655
BstMWI	GCNNNNNNNGC	2 cut(s)	436, 697
BstNI	CCWGG	2 cut(s)	225, 331
BstNSI	RCATGY	2 cut(s)	319, 338
BstPI	GGTNACC	2 cut(s)	209, 583
BstSCI	CCNGG	3 cut(s)	223, 329, 695
BstV1I	GCAGC	1 cut(s)	617
BsuRI	GGCC	3 cut(s)	149, 439, 700
BtsCI	GGATG	1 cut(s)	626
Cac8I	GCNNGC	1 cut(s)	177
CciI	TCATGA	2 cut(s)	400, 457
CfoI	GCGC	2 cut(s)	253, 430
Cfr13I	GGNCC	6 cut(s)	437, 475, 506, 575, 632, 698
CpoI	CGGWCCG	1 cut(s)	632
Csp6I	GTAC	4 cut(s)	58, 283, 541, 637
CspI	CGGWCCG	1 cut(s)	632
CviAII	CATG	8 cut(s)	15, 116, 133, 316, 335, 401, 458, 538
CviQI	GTAC	4 cut(s)	58, 283, 541, 637
DdeI	CTNAG	2 cut(s)	128, 511
DpnI	GATC	3 cut(s)	345, 649, 657
DpnII	GATC	3 cut(s)	343, 647, 655
DrdI	GACNNNNNNGTC	1 cut(s)	521
DseDI	GACNNNNNNGTC	1 cut(s)	521
EaeI	YGGCCR	1 cut(s)	147
Eco130I	CCWWGG	3 cut(s)	485, 560, 621
Eco24I	GRGCYC	3 cut(s)	560, 620, 686
Eco47I	GGWCC	4 cut(s)	475, 506, 575, 632
Eco57I	CTGAAG	1 cut(s)	555
Eco88I	CYCGRG	1 cut(s)	685
Eco91I	GGTNACC	2 cut(s)	209, 583
EcoO109I	RGGNCCY	2 cut(s)	506, 575
EcoO65I	GGTNACC	2 cut(s)	209, 583
EcoRII	CCWGG	2 cut(s)	223, 329
EcoT14I	CCWWGG	3 cut(s)	485, 560, 621
EcoT38I	GRGCYC	3 cut(s)	560, 620, 686
ErhI	CCWWGG	3 cut(s)	485, 560, 621
FaeI	CATG	8 cut(s)	18, 119, 136, 319, 338, 404, 461, 541
FalI	AAGNNNNNCTT	2 cut(s)	283, 315
FaqI	GGGAC	2 cut(s)	310, 461
FatI	CATG	8 cut(s)	14, 115, 132, 315, 334, 400, 457, 537
FauNDI	CATATG	2 cut(s)	652, 724
FbaI	TGATCA	1 cut(s)	343
Fnu4HI	GCNGC	2 cut(s)	606, 701
FokI	GGATG	1 cut(s)	613
FriOI	GRGCYC	3 cut(s)	560, 620, 686
Fsp4HI	GCNGC	2 cut(s)	606, 701
FspBI	CTAG	3 cut(s)	161, 486, 561
GlaI	GCGC	2 cut(s)	252, 429
GluI	GCNGC	2 cut(s)	606, 701
GsaI	CCCAGC	1 cut(s)	250
HaeII	RGCGCY	1 cut(s)	254
HaeIII	GGCC	3 cut(s)	149, 439, 700
HapII	CCGG	2 cut(s)	630, 696
HhaI	GCGC	2 cut(s)	253, 430
Hin1II	CATG	8 cut(s)	18, 119, 136, 319, 338, 404, 461, 541
Hin6I	GCGC	2 cut(s)	251, 428
HinP1I	GCGC	2 cut(s)	251, 428
HindIII	AAGCTT	1 cut(s)	173
HinfI	GANTC	2 cut(s)	454, 515
HpaII	CCGG	2 cut(s)	630, 696
HphI	GGTGA	3 cut(s)	203, 595, 679
Hpy166II	GTNNAC	2 cut(s)	543, 742
Hpy188I	TCNGA	1 cut(s)	420
Hpy188III	TCNNGA	6 cut(s)	362, 401, 458, 504, 630, 785
Hpy8I	GTNNAC	2 cut(s)	543, 742
HpyAV	CCTTC	2 cut(s)	724, 729
HpyCH4III	ACNGT	1 cut(s)	636
HpyCH4IV	ACGT	2 cut(s)	99, 744
HpyCH4V	TGCA	1 cut(s)	605
HpyF10VI	GCNNNNNNNGC	2 cut(s)	436, 697
HpyF3I	CTNAG	2 cut(s)	128, 511
HpySE526I	ACGT	2 cut(s)	99, 744
Hsp92II	CATG	8 cut(s)	18, 119, 136, 319, 338, 404, 461, 541
HspAI	GCGC	2 cut(s)	251, 428
Kpn2I	TCCGGA	1 cut(s)	629
Ksp22I	TGATCA	1 cut(s)	343
Kzo9I	GATC	3 cut(s)	343, 647, 655
LmnI	GCTCC	5 cut(s)	420, 489, 555, 615, 681
Lsp1109I	GCAGC	1 cut(s)	617
LweI	GCATC	2 cut(s)	72, 635
MaeI	CTAG	3 cut(s)	161, 486, 561
MaeII	ACGT	2 cut(s)	99, 744
MaeIII	GTNAC	4 cut(s)	209, 583, 667, 715
MalI	GATC	3 cut(s)	345, 649, 657
MboI	GATC	3 cut(s)	343, 647, 655
MboII	GAAGA	2 cut(s)	61, 685
MhlI	GDGCHC	3 cut(s)	560, 620, 686
MlsI	TGGCCA	1 cut(s)	149
MluCI	AATT	1 cut(s)	231
MluNI	TGGCCA	1 cut(s)	149
MlyI	GAGTC	2 cut(s)	448, 509
MmeI	TCCRAC	1 cut(s)	423
MnlI	CCTC	9 cut(s)	88, 187, 368, 397, 400, 444, 456, 525, 681
Mox20I	TGGCCA	1 cut(s)	149
MroI	TCCGGA	1 cut(s)	629
MroXI	GAANNNNTTC	1 cut(s)	272
MscI	TGGCCA	1 cut(s)	149
MseI	TTAA	1 cut(s)	111
Msp20I	TGGCCA	1 cut(s)	149
MspI	CCGG	2 cut(s)	630, 696
MspR9I	CCNGG	3 cut(s)	225, 331, 697
MvaI	CCWGG	2 cut(s)	225, 331
MwoI	GCNNNNNNNGC	2 cut(s)	436, 697
NciI	CCSGG	1 cut(s)	697
NdeI	CATATG	2 cut(s)	652, 724
NdeII	GATC	3 cut(s)	343, 647, 655
NlaIII	CATG	8 cut(s)	18, 119, 136, 319, 338, 404, 461, 541
NlaIV	GGNNCC	6 cut(s)	438, 477, 508, 557, 617, 683
NmeAIII	GCCGAG	1 cut(s)	222
NmuCI	GTSAC	4 cut(s)	209, 583, 667, 715
NspI	RCATGY	2 cut(s)	319, 338
PagI	TCATGA	2 cut(s)	400, 457
PasI	CCCWGGG	1 cut(s)	224
PciI	ACATGT	1 cut(s)	315
PdmI	GAANNNNTTC	1 cut(s)	272
Pfl23II	CGTACG	1 cut(s)	636
PkrI	GCNGC	2 cut(s)	607, 702
PleI	GAGTC	2 cut(s)	448, 509
PpsI	GAGTC	2 cut(s)	448, 509
PpuMI	RGGWCCY	2 cut(s)	506, 575
PscI	ACATGT	1 cut(s)	315
Psp5II	RGGWCCY	2 cut(s)	506, 575
Psp6I	CCWGG	2 cut(s)	223, 329
PspEI	GGTNACC	2 cut(s)	209, 583
PspFI	CCCAGC	1 cut(s)	246
PspGI	CCWGG	2 cut(s)	223, 329
PspLI	CGTACG	1 cut(s)	636
PspN4I	GGNNCC	6 cut(s)	438, 477, 508, 557, 617, 683
PspPI	GGNCC	6 cut(s)	437, 475, 506, 575, 632, 698
PspPPI	RGGWCCY	2 cut(s)	506, 575
RsaI	GTAC	4 cut(s)	59, 284, 542, 638
RsaNI	GTAC	4 cut(s)	58, 283, 541, 637
Rsr2I	CGGWCCG	1 cut(s)	632
RsrII	CGGWCCG	1 cut(s)	632
SaqAI	TTAA	1 cut(s)	111
SatI	GCNGC	2 cut(s)	606, 701
Sau3AI	GATC	3 cut(s)	343, 647, 655
Sau96I	GGNCC	6 cut(s)	437, 475, 506, 575, 632, 698
ScaI	AGTACT	1 cut(s)	284
SchI	GAGTC	2 cut(s)	448, 509
ScrFI	CCNGG	3 cut(s)	225, 331, 697
SduI	GDGCHC	3 cut(s)	560, 620, 686
SfaNI	GCATC	2 cut(s)	72, 635
SinI	GGWCC	4 cut(s)	475, 506, 575, 632
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
Sse9I	AATT	1 cut(s)	231
SsiI	CCGC	3 cut(s)	201, 214, 701
SspMI	CTAG	3 cut(s)	161, 486, 561
StyD4I	CCNGG	3 cut(s)	223, 329, 695
StyI	CCWWGG	3 cut(s)	485, 560, 621
TaaI	ACNGT	1 cut(s)	636
TaiI	ACGT	2 cut(s)	102, 747
TaqI	TCGA	2 cut(s)	23, 386
TaqII	GACCGA	1 cut(s)	602
TasI	AATT	1 cut(s)	231
TatI	WGTACW	2 cut(s)	282, 540
TauI	GCSGC	1 cut(s)	703
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TseFI	GTSAC	4 cut(s)	209, 583, 667, 715
TseI	GCWGC	1 cut(s)	605
Tsp45I	GTSAC	4 cut(s)	209, 583, 667, 715
VpaK11BI	GGWCC	4 cut(s)	475, 506, 575, 632
XceI	RCATGY	2 cut(s)	319, 338
XmaJI	CCTAGG	2 cut(s)	485, 560
XmnI	GAANNNNTTC	1 cut(s)	272
XspI	CTAG	3 cut(s)	161, 486, 561
ZrmI	AGTACT	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.