Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040758.1

Orthogroup ID

OG0002382

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1129

Gene Structure 1129 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040758.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

atggcagagccactctccaccaccaccaccgcctctctctcacctcaattctcacaaaccctggtccccaattcttcttcttcttcttccaccgctctccgccacgaaatccacccgatcgacgatgagtcgctctcgtcgctctgtattcccggttcgaaactggtccgaaccgggttcgtacgctccgctcgctcagatgacgagcctgtgttgtttgtgaatgctggaggggaggctttaatggaaactaggaatgtcggttttcgagtcgagaatgacaagtttttccaaggagggagcgttataagaactgatgagaccattgaagggagtgatgttgatgtacaatccatttatcagtctgcacgttttgggattttcgggtatcggtttgagaatctgtctcctggagattattttgtggatcttcatttttcggagatcatatacagtaatggtccgaaagggatgagggtgtttgatgtcttcatgcaggaagagaaggttctgtccgaaattgatatctattctgtcgtcggagcaaataaggcactacaggtggtggatgtcaaagtgtctgtgggggaggatggg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin Malectin

Protein Analysis

199

Amino Acids

21.76

Weight (kDa)

4.55

Isoelectric Point (pI)

42.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002382)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22610 AT2G22610 AT2G22610
fragaria_vesca	FvH4_1g19311 FvH4_1g19311 FvH4_1g19311 FvH4_1g19311 FvH4_1g19311 FvH4_5g34300 FvH4_5g34300
malus_domestica	MD08G1202900.v1.1 MD15G1388700.v1.1
prunus_persica	Prupe.1G535100_v2.0.a1 Prupe.6G205100_v2.0.a1 Prupe.6G205100_v2.0.a1 Prupe.6G205100_v2.0.a1 Prupe.6G205100_v2.0.a1 Prupe.6G205100_v2.0.a1 Prupe.6G205100_v2.0.a1
pyrus_communis	pycom08g17520 pycom15g34860
rosa_chinensis	RchiOBHm_Chr2g0110681 RchiOBHm_Chr7g0234871
rosa_laevigata	RLG00000001208 RLG00000017830
rosa_multiflora	Rmu_sc0000039.1_g000002 Rmu_sc0000389.1_g000040 Rmu_sc0040758.1_g000001
rosa_roxburghii	Rroxscaffold_2G00133040 Rroxscaffold_3G00226690
rosa_rugosa	Rorug02G0168600 Rorug02G0168600 Rorug07G0285900
rosa_samantha	Rh2AG220900 Rh2BG231000 Rh2CG223300 Rh2DG227100 Rh7AG440500 Rh7BG413300 Rh7CG462200 Rh7DG430200
rosa_wichuraiana	Rw7G036620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	308
AccBSI	CCGCTC	2 cut(s)	95, 191
AciI	CCGC	4 cut(s)	30, 93, 100, 189
AclWI	GGATC	1 cut(s)	435
AfaI	GTAC	2 cut(s)	183, 348
AfiI	CCNNNNNNNGG	1 cut(s)	330
AgsI	TTSAA	1 cut(s)	329
AhdI	GACNNNNNGTC	1 cut(s)	127
AjnI	CCWGG	2 cut(s)	60, 409
Alw26I	GTCTC	2 cut(s)	314, 411
AlwI	GGATC	1 cut(s)	435
AspS9I	GGNCC	3 cut(s)	64, 166, 461
AsuC2I	CCSGG	2 cut(s)	153, 175
AsuHPI	GGTGA	1 cut(s)	33
AsuII	TTCGAA	1 cut(s)	158
AvaII	GGWCC	3 cut(s)	64, 166, 461
BbsI	GAAGAC	1 cut(s)	481
BccI	CCATC	1 cut(s)	587
BciT130I	CCWGG	2 cut(s)	62, 411
BcnI	CCSGG	2 cut(s)	153, 175
BcoDI	GTCTC	2 cut(s)	314, 411
BfaI	CTAG	1 cut(s)	252
BfmI	CTRYAG	1 cut(s)	557
Bme1390I	CCNGG	4 cut(s)	62, 153, 175, 411
Bme18I	GGWCC	3 cut(s)	64, 166, 461
BmeRI	GACNNNNNGTC	1 cut(s)	127
BmgT120I	GGNCC	3 cut(s)	64, 166, 461
BmiI	GGNNCC	1 cut(s)	66
BmrFI	CCNGG	4 cut(s)	62, 153, 175, 411
BpiI	GAAGAC	1 cut(s)	481
BplI	GAGNNNNNCTC	3 cut(s)	31, 119, 151
BpmI	CTGGAG	2 cut(s)	249, 432
Bpu14I	TTCGAA	1 cut(s)	158
BpuMI	CCSGG	2 cut(s)	153, 175
BsaI	GGTCTC	1 cut(s)	314
BsaJI	CCNNGG	2 cut(s)	60, 292
BsaXI	ACNNNNNCTCC	2 cut(s)	288, 318
Bsc4I	CCNNNNNNNGG	1 cut(s)	330
Bse1I	ACTGG	1 cut(s)	168
BseBI	CCWGG	2 cut(s)	62, 411
BseDI	CCNNGG	2 cut(s)	60, 292
BseGI	GGATG	2 cut(s)	477, 574
BseLI	CCNNNNNNNGG	1 cut(s)	330
BseMII	CTCAG	1 cut(s)	210
BseNI	ACTGG	1 cut(s)	168
BsgI	GTGCAG	1 cut(s)	351
Bsh1285I	CGRYCG	1 cut(s)	120
BsiEI	CGRYCG	1 cut(s)	120
BsiSI	CCGG	2 cut(s)	153, 174
BsiWI	CGTACG	1 cut(s)	181
BslFI	GGGAC	1 cut(s)	50
BslI	CCNNNNNNNGG	1 cut(s)	330
BsmAI	GTCTC	2 cut(s)	314, 411
BsmFI	GGGAC	1 cut(s)	50
BsmI	GAATGC	1 cut(s)	229
Bso31I	GGTCTC	1 cut(s)	314
Bsp119I	TTCGAA	1 cut(s)	158
Bsp1407I	TGTACA	1 cut(s)	346
Bsp143I	GATC	3 cut(s)	117, 427, 444
BspACI	CCGC	4 cut(s)	30, 93, 100, 189
BspCNI	CTCAG	1 cut(s)	209
BspLI	GGNNCC	1 cut(s)	66
BspPI	GGATC	1 cut(s)	435
BspT104I	TTCGAA	1 cut(s)	158
BspTNI	GGTCTC	1 cut(s)	314
BsrBI	CCGCTC	2 cut(s)	95, 191
BsrGI	TGTACA	1 cut(s)	346
BsrI	ACTGG	1 cut(s)	168
BssECI	CCNNGG	2 cut(s)	60, 292
BssMI	GATC	3 cut(s)	117, 427, 444
BssT1I	CCWWGG	1 cut(s)	292
Bst2UI	CCWGG	2 cut(s)	62, 411
Bst4CI	ACNGT	1 cut(s)	455
Bst6I	CTCTTC	1 cut(s)	495
BstAUI	TGTACA	1 cut(s)	346
BstBI	TTCGAA	1 cut(s)	158
BstC8I	GCNNGC	1 cut(s)	193
BstDEI	CTNAG	1 cut(s)	196
BstF5I	GGATG	2 cut(s)	477, 574
BstKTI	GATC	3 cut(s)	120, 430, 447
BstMAI	GTCTC	2 cut(s)	314, 411
BstMBI	GATC	3 cut(s)	117, 427, 444
BstMCI	CGRYCG	1 cut(s)	120
BstMWI	GCNNNNNNNGC	3 cut(s)	139, 192, 551
BstNI	CCWGG	2 cut(s)	62, 411
BstSCI	CCNGG	4 cut(s)	60, 151, 173, 409
BstSFI	CTRYAG	1 cut(s)	557
BstV2I	GAAGAC	1 cut(s)	481
BstX2I	RGATCY	1 cut(s)	427
BstYI	RGATCY	1 cut(s)	427
BtsCI	GGATG	2 cut(s)	477, 574
Cac8I	GCNNGC	1 cut(s)	193
Cfr13I	GGNCC	3 cut(s)	64, 166, 461
Csp6I	GTAC	2 cut(s)	182, 347
CviAII	CATG	1 cut(s)	493
CviJI	RGCY	3 cut(s)	10, 208, 239
CviKI_1	RGCY	3 cut(s)	10, 208, 239
CviQI	GTAC	2 cut(s)	182, 347
DdeI	CTNAG	1 cut(s)	196
DpnI	GATC	3 cut(s)	119, 429, 446
DpnII	GATC	3 cut(s)	117, 427, 444
DriI	GACNNNNNGTC	1 cut(s)	127
Eam1104I	CTCTTC	1 cut(s)	495
Eam1105I	GACNNNNNGTC	1 cut(s)	127
EarI	CTCTTC	1 cut(s)	495
EciI	GGCGGA	1 cut(s)	89
Eco130I	CCWWGG	1 cut(s)	292
Eco31I	GGTCTC	1 cut(s)	314
Eco32I	GATATC	1 cut(s)	526
Eco47I	GGWCC	3 cut(s)	64, 166, 461
EcoRII	CCWGG	2 cut(s)	60, 409
EcoRV	GATATC	1 cut(s)	526
EcoT14I	CCWWGG	1 cut(s)	292
ErhI	CCWWGG	1 cut(s)	292
FaeI	CATG	1 cut(s)	496
FaiI	YATR	4 cut(s)	308, 449, 451, 494
FaqI	GGGAC	1 cut(s)	50
FatI	CATG	1 cut(s)	492
FokI	GGATG	2 cut(s)	484, 581
FspBI	CTAG	1 cut(s)	252
GsuI	CTGGAG	2 cut(s)	249, 432
HapII	CCGG	2 cut(s)	153, 174
Hin1II	CATG	1 cut(s)	496
HinfI	GANTC	3 cut(s)	128, 270, 400
HpaII	CCGG	2 cut(s)	153, 174
HphI	GGTGA	1 cut(s)	33
Hpy188I	TCNGA	6 cut(s)	170, 199, 442, 465, 517, 542
Hpy188III	TCNNGA	1 cut(s)	274
Hpy99I	CGWCG	3 cut(s)	125, 142, 542
HpyAV	CCTTC	2 cut(s)	323, 499
HpyCH4III	ACNGT	1 cut(s)	455
HpyCH4IV	ACGT	1 cut(s)	370
HpyCH4V	TGCA	2 cut(s)	368, 496
HpyF10VI	GCNNNNNNNGC	3 cut(s)	139, 192, 551
HpyF3I	CTNAG	1 cut(s)	196
HpySE526I	ACGT	1 cut(s)	370
Hsp92II	CATG	1 cut(s)	496
Kzo9I	GATC	3 cut(s)	117, 427, 444
LmnI	GCTCC	3 cut(s)	191, 300, 542
MaeI	CTAG	1 cut(s)	252
MaeII	ACGT	1 cut(s)	370
MalI	GATC	3 cut(s)	119, 429, 446
MbiI	CCGCTC	2 cut(s)	95, 191
MboI	GATC	3 cut(s)	117, 427, 444
MboII	GAAGA	8 cut(s)	66, 69, 72, 75, 78, 422, 481, 512
MflI	RGATCY	1 cut(s)	427
MluCI	AATT	3 cut(s)	47, 70, 519
MlyI	GAGTC	2 cut(s)	137, 279
MmeI	TCCRAC	1 cut(s)	520
MnlI	CCTC	7 cut(s)	43, 54, 224, 229, 290, 468, 583
MseI	TTAA	1 cut(s)	242
MspI	CCGG	2 cut(s)	153, 174
MspR9I	CCNGG	4 cut(s)	62, 153, 175, 411
Mva1269I	GAATGC	1 cut(s)	229
MvaI	CCWGG	2 cut(s)	62, 411
MwoI	GCNNNNNNNGC	3 cut(s)	139, 192, 551
NciI	CCSGG	2 cut(s)	153, 175
NdeII	GATC	3 cut(s)	117, 427, 444
NlaIII	CATG	1 cut(s)	496
NlaIV	GGNNCC	1 cut(s)	66
NspV	TTCGAA	1 cut(s)	158
PctI	GAATGC	1 cut(s)	229
PfeI	GAWTC	1 cut(s)	400
Pfl23II	CGTACG	1 cut(s)	181
PfoI	TCCNGGA	1 cut(s)	409
Ple19I	CGATCG	1 cut(s)	120
PleI	GAGTC	2 cut(s)	136, 278
PpsI	GAGTC	2 cut(s)	136, 278
PsiI	TTATAA	1 cut(s)	308
Psp6I	CCWGG	2 cut(s)	60, 409
PspGI	CCWGG	2 cut(s)	60, 409
PspLI	CGTACG	1 cut(s)	181
PspN4I	GGNNCC	1 cut(s)	66
PspPI	GGNCC	3 cut(s)	64, 166, 461
PsrI	GAACNNNNNNTAC	2 cut(s)	139, 171
PsuI	RGATCY	1 cut(s)	427
PvuI	CGATCG	1 cut(s)	120
RsaI	GTAC	2 cut(s)	183, 348
RsaNI	GTAC	2 cut(s)	182, 347
SaqAI	TTAA	1 cut(s)	242
Sau3AI	GATC	3 cut(s)	117, 427, 444
Sau96I	GGNCC	3 cut(s)	64, 166, 461
SchI	GAGTC	2 cut(s)	137, 279
ScrFI	CCNGG	4 cut(s)	62, 153, 175, 411
SetI	ASST	4 cut(s)	46, 373, 510, 564
SfcI	CTRYAG	1 cut(s)	557
SfuI	TTCGAA	1 cut(s)	158
SinI	GGWCC	3 cut(s)	64, 166, 461
Sse9I	AATT	3 cut(s)	47, 70, 519
SsiI	CCGC	4 cut(s)	30, 93, 100, 189
SspMI	CTAG	1 cut(s)	252
StyD4I	CCNGG	4 cut(s)	60, 151, 173, 409
StyI	CCWWGG	1 cut(s)	292
TaaI	ACNGT	1 cut(s)	455
TaiI	ACGT	1 cut(s)	373
TaqI	TCGA	4 cut(s)	120, 158, 268, 273
TasI	AATT	3 cut(s)	47, 70, 519
TatI	WGTACW	1 cut(s)	346
TfiI	GAWTC	1 cut(s)	400
Tru1I	TTAA	1 cut(s)	242
Tru9I	TTAA	1 cut(s)	242
TspDTI	ATGAA	2 cut(s)	422, 481
VpaK11BI	GGWCC	3 cut(s)	64, 166, 461
XspI	CTAG	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.