Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002382

Physical Location & Seq

Genomic Coordinates Forward (+)

15129127 .. 15132139

Gene Structure 3013 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0168600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGAGCTCAGCTTAGATTCCAACATGGTCTTCGTCCCCAAGACCATCTCCGAGTTTCTGTCACAAGTCTCGGCCGTTAAAGACGGCGCTCAGAGGTCGTTGAAGCTTGAAGAGTATGTGAAAAGACTCGAAGATGAAATGAGGAAGATCGAGGTTTTCAAGAGGGAGCTTCCTCTGTGTATGGTTATATTGAAAGATGCGATTGAGAGATTGAAAGAGGAAGTAATGCAGTGCGGGATAGTGGAAGATCGGGCGGTGATTGAAGAGTTCATACCGTTGAAGAAGAAGGATGAGAATGAAGGGGTAGTTTCGGAAAAGGAGAATAGTGACATGAAGAGCTGGATGAGCTCTGCTCAGCTCTGGAGCACTAATATCAACGTTGATTACAGCAAATCAGGACTCAAAATGAGAAATGAGGATGATGATCGGTCTGTGCCTGAGAACCCAATTGAGATAAGTAATAAGAGAAGCAGGAGAGGGGCGTTTGTGCCATTTAAGGGAAATTATGAGTCTGGTTTTGCAAGGACTTGTGTGAAGGAAGACAAGGAGGTTTCACAGGTGCCAAGCCTTTCTCTGATGACTCCAACGTCTGAACTTGGTGGCTTTAATAATGCAAACTCTAAGAGCAGCACTAGAGGAGGTTCTGGTCCATCTTTGGTGAAGTTACAGATTGAGCCTCAGCAGCAGCAACAATGTTTTAGGAAACAAAGGCGATGCTGGTCACCGGAGCTTCATCGCCGATTTATTGATGCACTTCAACAGCTTGGGGGATCACAAGCTACTCCTAAACAGATTAGAGAGCTTATGCAGGTAGATGGTCTCACCAATGATGAAGTGAAAAGCCATTTGCAGAAATACAGACTTCACGTCCGAAAGGTGCCAGCTTCTTCTGCTGGTGAAGCCAGTGGTTTATGGATGAACCAAGATCACTGTGGAGACAATTCAAAGGCAAATACTTCACAGTCTGGTTCTCCACAGGGTCCCCTCCTTGGTATGGAGTTTGCCAAAGGTGGTCAATCTACAACCGGAGGCGACAGCACAGAAACAGAAGAAGATGATCAGAATTCAGATGGCCACAGTTGGAAAGGGGCACGCCACAACTCCGGTGGAGATGTAGAGTCTTGTACTAATCCCCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin Malectin

Protein Analysis

379

Amino Acids

42.28

Weight (kDa)

5.73

Isoelectric Point (pI)

62.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HHO5_N	PF26575	4 - 76	6.4e-30	HHO5-like, N-terminal domain
Myb_DNA-binding	PF00249	237 - 287	5.1e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002382)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22610 AT2G22610 AT2G22610
fragaria_vesca	FvH4_1g19311 FvH4_1g19311 FvH4_1g19311 FvH4_1g19311 FvH4_1g19311 FvH4_5g34300 FvH4_5g34300
malus_domestica	MD08G1202900.v1.1 MD15G1388700.v1.1
prunus_persica	Prupe.1G535100_v2.0.a1 Prupe.6G205100_v2.0.a1 Prupe.6G205100_v2.0.a1 Prupe.6G205100_v2.0.a1 Prupe.6G205100_v2.0.a1 Prupe.6G205100_v2.0.a1 Prupe.6G205100_v2.0.a1
pyrus_communis	pycom08g17520 pycom15g34860
rosa_chinensis	RchiOBHm_Chr2g0110681 RchiOBHm_Chr7g0234871
rosa_laevigata	RLG00000001208 RLG00000017830
rosa_multiflora	Rmu_sc0000039.1_g000002 Rmu_sc0000389.1_g000040 Rmu_sc0040758.1_g000001
rosa_roxburghii	Rroxscaffold_2G00133040 Rroxscaffold_3G00226690
rosa_rugosa	Rorug02G0168600 Rorug02G0168600 Rorug07G0285900
rosa_samantha	Rh2AG220900 Rh2BG231000 Rh2CG223300 Rh2DG227100 Rh7AG440500 Rh7BG413300 Rh7CG462200 Rh7DG430200
rosa_wichuraiana	Rw7G036620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	586
Acc36I	ACCTGC	1 cut(s)	799
AccB1I	GGYRCC	2 cut(s)	559, 877
AciI	CCGC	2 cut(s)	234, 254
AclI	AACGTT	1 cut(s)	378
AclWI	GGATC	1 cut(s)	778
AcoI	YGGCCR	2 cut(s)	72, 1072
AcsI	RAATTY	1 cut(s)	1063
AfaI	GTAC	1 cut(s)	1126
AfiI	CCNNNNNNNGG	3 cut(s)	497, 989, 994
AgsI	TTSAA	9 cut(s)	103, 110, 160, 193, 214, 263, 280, 758, 945
AhdI	GACNNNNNGTC	1 cut(s)	866
AjiI	CACGTC	1 cut(s)	868
AjuI	GAANNNNNNNTTGG	2 cut(s)	14, 46
Alw21I	GWGCWC	3 cut(s)	9, 350, 368
Alw26I	GTCTC	3 cut(s)	73, 824, 930
AlwI	GGATC	1 cut(s)	778
AoxI	GGCC	2 cut(s)	72, 1072
ApeKI	GCWGC	3 cut(s)	627, 682, 685
ApoI	RAATTY	1 cut(s)	1063
AspLEI	GCGC	1 cut(s)	89
AspS9I	GGNCC	2 cut(s)	647, 980
AsuHPI	GGTGA	5 cut(s)	268, 670, 714, 814, 908
AvaII	GGWCC	2 cut(s)	647, 980
BaeGI	GKGCMC	1 cut(s)	1093
BalI	TGGCCA	1 cut(s)	1074
BanI	GGYRCC	2 cut(s)	559, 877
BanII	GRGCYC	2 cut(s)	9, 350
BarI	GAAGNNNNNNTAC	2 cut(s)	255, 287
BbsI	GAAGAC	2 cut(s)	22, 546
Bbv12I	GWGCWC	3 cut(s)	9, 350, 368
BbvCI	CCTCAGC	1 cut(s)	678
BbvI	GCAGC	3 cut(s)	639, 694, 697
BccI	CCATC	4 cut(s)	53, 658, 809, 1064
BceAI	ACGGC	2 cut(s)	59, 100
BclI	TGATCA	1 cut(s)	1057
BcoDI	GTCTC	3 cut(s)	73, 824, 930
BfaI	CTAG	1 cut(s)	633
BfoI	RGCGCY	1 cut(s)	90
BfuAI	ACCTGC	1 cut(s)	799
BisI	GCNGC	3 cut(s)	628, 683, 686
BlpI	GCTNAGC	2 cut(s)	8, 354
BlsI	GCNGC	3 cut(s)	629, 684, 687
Bme18I	GGWCC	2 cut(s)	647, 980
BmeRI	GACNNNNNGTC	1 cut(s)	866
BmgBI	CACGTC	1 cut(s)	868
BmgT120I	GGNCC	2 cut(s)	647, 980
BmiI	GGNNCC	4 cut(s)	561, 879, 981, 982
BmsI	GCATC	3 cut(s)	187, 704, 739
BpiI	GAAGAC	2 cut(s)	22, 546
BplI	GAGNNNNNCTC	2 cut(s)	337, 369
BpmI	CTGGAG	1 cut(s)	382
Bpu10I	CCTNAGC	1 cut(s)	678
Bpu1102I	GCTNAGC	2 cut(s)	8, 354
BsaBI	GATNNNNATC	1 cut(s)	423
BsaI	GGTCTC	1 cut(s)	824
BsaJI	CCNNGG	1 cut(s)	988
BsaWI	WCCGGW	3 cut(s)	724, 1025, 1103
Bsc4I	CCNNNNNNNGG	3 cut(s)	497, 989, 994
Bse1I	ACTGG	1 cut(s)	903
Bse8I	GATNNNNATC	1 cut(s)	423
BseDI	CCNNGG	1 cut(s)	988
BseGI	GGATG	4 cut(s)	295, 348, 424, 921
BseJI	GATNNNNATC	1 cut(s)	423
BseLI	CCNNNNNNNGG	3 cut(s)	497, 989, 994
BseMII	CTCAG	5 cut(s)	22, 104, 368, 429, 692
BseNI	ACTGG	1 cut(s)	903
BseRI	GAGGAG	1 cut(s)	651
BseSI	GKGCMC	1 cut(s)	1093
BseX3I	CGGCCG	1 cut(s)	72
BseXI	GCAGC	3 cut(s)	639, 694, 697
Bsh1285I	CGRYCG	1 cut(s)	75
BshFI	GGCC	2 cut(s)	74, 1074
BshNI	GGYRCC	2 cut(s)	559, 877
BsiEI	CGRYCG	1 cut(s)	75
BsiHKAI	GWGCWC	3 cut(s)	9, 350, 368
BsiSI	CCGG	3 cut(s)	725, 1026, 1104
BslFI	GGGAC	2 cut(s)	20, 966
BslI	CCNNNNNNNGG	3 cut(s)	497, 989, 994
BsmAI	GTCTC	3 cut(s)	73, 824, 930
BsmFI	GGGAC	2 cut(s)	20, 966
BsnI	GGCC	2 cut(s)	74, 1074
Bso31I	GGTCTC	1 cut(s)	824
Bsp1286I	GDGCHC	4 cut(s)	9, 350, 368, 1093
Bsp143I	GATC	6 cut(s)	147, 247, 424, 770, 925, 1057
Bsp1720I	GCTNAGC	2 cut(s)	8, 354
BspACI	CCGC	2 cut(s)	234, 254
BspANI	GGCC	2 cut(s)	74, 1074
BspCNI	CTCAG	5 cut(s)	21, 103, 367, 430, 691
BspLI	GGNNCC	4 cut(s)	561, 879, 981, 982
BspMI	ACCTGC	1 cut(s)	799
BspPI	GGATC	1 cut(s)	778
BspQI	GCTCTTC	1 cut(s)	329
BspT107I	GGYRCC	2 cut(s)	559, 877
BspTNI	GGTCTC	1 cut(s)	824
BsrI	ACTGG	1 cut(s)	903
BssECI	CCNNGG	1 cut(s)	988
BssMI	GATC	6 cut(s)	147, 247, 424, 770, 925, 1057
BssT1I	CCWWGG	1 cut(s)	988
Bst4CI	ACNGT	4 cut(s)	276, 932, 963, 1079
Bst6I	CTCTTC	3 cut(s)	105, 258, 329
BstC8I	GCNNGC	2 cut(s)	882, 1093
BstDEI	CTNAG	7 cut(s)	8, 13, 90, 354, 438, 621, 678
BstEII	GGTNACC	1 cut(s)	720
BstF5I	GGATG	4 cut(s)	295, 348, 424, 921
BstH2I	RGCGCY	1 cut(s)	90
BstHHI	GCGC	1 cut(s)	89
BstKTI	GATC	6 cut(s)	150, 250, 427, 773, 928, 1060
BstMAI	GTCTC	3 cut(s)	73, 824, 930
BstMBI	GATC	6 cut(s)	147, 247, 424, 770, 925, 1057
BstMCI	CGRYCG	1 cut(s)	75
BstMWI	GCNNNNNNNGC	4 cut(s)	345, 682, 890, 899
BstPI	GGTNACC	1 cut(s)	720
BstSLI	GKGCMC	1 cut(s)	1093
BstV1I	GCAGC	3 cut(s)	639, 694, 697
BstV2I	GAAGAC	2 cut(s)	22, 546
BstZI	CGGCCG	1 cut(s)	72
BsuRI	GGCC	2 cut(s)	74, 1074
BtgZI	GCGATG	2 cut(s)	719, 727
BtrI	CACGTC	1 cut(s)	868
BtsCI	GGATG	4 cut(s)	295, 348, 424, 921
BtsI	GCAGTG	1 cut(s)	236
BtsIMutI	CAGTG	3 cut(s)	236, 910, 928
BveI	ACCTGC	1 cut(s)	799
Cac8I	GCNNGC	2 cut(s)	882, 1093
CfoI	GCGC	1 cut(s)	89
Cfr13I	GGNCC	2 cut(s)	647, 980
Csp6I	GTAC	1 cut(s)	1125
CspCI	CAANNNNNGTGG	2 cut(s)	1087, 1122
CviAII	CATG	2 cut(s)	25, 331
CviQI	GTAC	1 cut(s)	1125
DdeI	CTNAG	7 cut(s)	8, 13, 90, 354, 438, 621, 678
DpnI	GATC	6 cut(s)	149, 249, 426, 772, 927, 1059
DpnII	GATC	6 cut(s)	147, 247, 424, 770, 925, 1057
DrdI	GACNNNNNNGTC	1 cut(s)	586
DriI	GACNNNNNGTC	1 cut(s)	866
DseDI	GACNNNNNNGTC	1 cut(s)	586
EaeI	YGGCCR	2 cut(s)	72, 1072
EagI	CGGCCG	1 cut(s)	72
Eam1104I	CTCTTC	3 cut(s)	105, 258, 329
Eam1105I	GACNNNNNGTC	1 cut(s)	866
EarI	CTCTTC	3 cut(s)	105, 258, 329
Ecl136II	GAGCTC	2 cut(s)	7, 348
EclXI	CGGCCG	1 cut(s)	72
Eco130I	CCWWGG	1 cut(s)	988
Eco24I	GRGCYC	2 cut(s)	9, 350
Eco31I	GGTCTC	1 cut(s)	824
Eco47I	GGWCC	2 cut(s)	647, 980
Eco52I	CGGCCG	1 cut(s)	72
Eco53kI	GAGCTC	2 cut(s)	7, 348
Eco91I	GGTNACC	1 cut(s)	720
EcoICRI	GAGCTC	2 cut(s)	7, 348
EcoO109I	RGGNCCY	1 cut(s)	980
EcoO65I	GGTNACC	1 cut(s)	720
EcoRI	GAATTC	1 cut(s)	1063
EcoT14I	CCWWGG	1 cut(s)	988
EcoT38I	GRGCYC	2 cut(s)	9, 350
ErhI	CCWWGG	1 cut(s)	988
FaeI	CATG	2 cut(s)	28, 334
FaqI	GGGAC	2 cut(s)	20, 966
FatI	CATG	2 cut(s)	24, 330
FauI	CCCGC	1 cut(s)	227
FbaI	TGATCA	1 cut(s)	1057
Fnu4HI	GCNGC	3 cut(s)	628, 683, 686
FokI	GGATG	4 cut(s)	302, 355, 431, 928
FriOI	GRGCYC	2 cut(s)	9, 350
Fsp4HI	GCNGC	3 cut(s)	628, 683, 686
FspBI	CTAG	1 cut(s)	633
GlaI	GCGC	1 cut(s)	88
GluI	GCNGC	3 cut(s)	628, 683, 686
GsuI	CTGGAG	1 cut(s)	382
HaeII	RGCGCY	1 cut(s)	90
HaeIII	GGCC	2 cut(s)	74, 1074
HapII	CCGG	3 cut(s)	725, 1026, 1104
HhaI	GCGC	1 cut(s)	89
Hin1II	CATG	2 cut(s)	28, 334
Hin6I	GCGC	1 cut(s)	87
HinP1I	GCGC	1 cut(s)	87
HindIII	AAGCTT	1 cut(s)	104
HinfI	GANTC	6 cut(s)	17, 126, 399, 509, 580, 1118
HpaII	CCGG	3 cut(s)	725, 1026, 1104
HphI	GGTGA	5 cut(s)	268, 670, 714, 814, 908
Hpy188I	TCNGA	8 cut(s)	52, 93, 313, 576, 592, 872, 1062, 1069
Hpy188III	TCNNGA	3 cut(s)	160, 361, 396
HpyAV	CCTTC	3 cut(s)	280, 293, 529
HpyCH4III	ACNGT	4 cut(s)	276, 932, 963, 1079
HpyCH4IV	ACGT	3 cut(s)	378, 587, 867
HpyCH4V	TGCA	6 cut(s)	229, 521, 614, 752, 808, 850
HpyF10VI	GCNNNNNNNGC	4 cut(s)	345, 682, 890, 899
HpyF3I	CTNAG	7 cut(s)	8, 13, 90, 354, 438, 621, 678
HpySE526I	ACGT	3 cut(s)	378, 587, 867
Hsp92II	CATG	2 cut(s)	28, 334
HspAI	GCGC	1 cut(s)	87
KflI	GGGWCCC	1 cut(s)	980
Ksp22I	TGATCA	1 cut(s)	1057
Kzo9I	GATC	6 cut(s)	147, 247, 424, 770, 925, 1057
LguI	GCTCTTC	1 cut(s)	329
LmnI	GCTCC	4 cut(s)	4, 166, 363, 727
Lsp1109I	GCAGC	3 cut(s)	639, 694, 697
LweI	GCATC	3 cut(s)	187, 704, 739
MaeI	CTAG	1 cut(s)	633
MaeII	ACGT	3 cut(s)	378, 587, 867
MaeIII	GTNAC	4 cut(s)	60, 326, 663, 720
MalI	GATC	6 cut(s)	149, 249, 426, 772, 927, 1059
MboI	GATC	6 cut(s)	147, 247, 424, 770, 925, 1057
MfeI	CAATTG	1 cut(s)	447
MhlI	GDGCHC	4 cut(s)	9, 350, 368, 1093
MlsI	TGGCCA	1 cut(s)	1074
MluCI	AATT	4 cut(s)	447, 502, 940, 1063
MluNI	TGGCCA	1 cut(s)	1074
MlyI	GAGTC	5 cut(s)	120, 393, 518, 574, 1127
MmeI	TCCRAC	3 cut(s)	45, 608, 1061
Mox20I	TGGCCA	1 cut(s)	1074
MscI	TGGCCA	1 cut(s)	1074
MseI	TTAA	3 cut(s)	78, 495, 606
Msp20I	TGGCCA	1 cut(s)	1074
MspI	CCGG	3 cut(s)	725, 1026, 1104
MunI	CAATTG	1 cut(s)	447
MwoI	GCNNNNNNNGC	4 cut(s)	345, 682, 890, 899
NdeII	GATC	6 cut(s)	147, 247, 424, 770, 925, 1057
NlaIII	CATG	2 cut(s)	28, 334
NlaIV	GGNNCC	4 cut(s)	561, 879, 981, 982
NmeAIII	GCCGAG	1 cut(s)	50
NmuCI	GTSAC	3 cut(s)	60, 326, 720
PciSI	GCTCTTC	1 cut(s)	329
PfeI	GAWTC	1 cut(s)	17
PkrI	GCNGC	3 cut(s)	629, 684, 687
PleI	GAGTC	5 cut(s)	120, 393, 517, 574, 1126
PpsI	GAGTC	5 cut(s)	120, 393, 517, 574, 1126
PpuMI	RGGWCCY	1 cut(s)	980
Psp124BI	GAGCTC	2 cut(s)	9, 350
Psp1406I	AACGTT	1 cut(s)	378
Psp5II	RGGWCCY	1 cut(s)	980
PspEI	GGTNACC	1 cut(s)	720
PspN4I	GGNNCC	4 cut(s)	561, 879, 981, 982
PspPI	GGNCC	2 cut(s)	647, 980
PspPPI	RGGWCCY	1 cut(s)	980
RsaI	GTAC	1 cut(s)	1126
RsaNI	GTAC	1 cut(s)	1125
SacI	GAGCTC	2 cut(s)	9, 350
SapI	GCTCTTC	1 cut(s)	329
SaqAI	TTAA	3 cut(s)	78, 495, 606
SatI	GCNGC	3 cut(s)	628, 683, 686
Sau3AI	GATC	6 cut(s)	147, 247, 424, 770, 925, 1057
Sau96I	GGNCC	2 cut(s)	647, 980
SchI	GAGTC	5 cut(s)	120, 393, 518, 574, 1127
SduI	GDGCHC	4 cut(s)	9, 350, 368, 1093
SfaNI	GCATC	3 cut(s)	187, 704, 739
SinI	GGWCC	2 cut(s)	647, 980
Sse9I	AATT	4 cut(s)	447, 502, 940, 1063
SsiI	CCGC	2 cut(s)	234, 254
SspMI	CTAG	1 cut(s)	633
SstI	GAGCTC	2 cut(s)	9, 350
StyI	CCWWGG	1 cut(s)	988
TaaI	ACNGT	4 cut(s)	276, 932, 963, 1079
TaiI	ACGT	3 cut(s)	381, 590, 870
TaqI	TCGA	2 cut(s)	129, 150
TaqII	GACCGA	1 cut(s)	417
TasI	AATT	4 cut(s)	447, 502, 940, 1063
TatI	WGTACW	1 cut(s)	1124
TfiI	GAWTC	1 cut(s)	17
Tru1I	TTAA	3 cut(s)	78, 495, 606
Tru9I	TTAA	3 cut(s)	78, 495, 606
TscAI	CASTG	3 cut(s)	236, 910, 935
TseFI	GTSAC	3 cut(s)	60, 326, 720
TseI	GCWGC	3 cut(s)	627, 682, 685
Tsp45I	GTSAC	3 cut(s)	60, 326, 720
TspDTI	ATGAA	7 cut(s)	150, 259, 312, 347, 722, 846, 932
TspRI	CASTG	3 cut(s)	236, 910, 935
VpaK11BI	GGWCC	2 cut(s)	647, 980
XapI	RAATTY	1 cut(s)	1063
XcmI	CCANNNNNNNNNTGG	2 cut(s)	929, 1103
XspI	CTAG	1 cut(s)	633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.