Rmu_ssc0000063.1_g000001

Man1-Src1p-C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000063.1
OG0011342
Physical Location & Seq
Forward (+)
2587 .. 6490
3904 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1341 bp
atgtcttcgactccaaagaagcgccctaaacccaaacccaggcctcactctcccccttcttcgattccattactcctcgaacctcccccgagtctctttcccaccaaggacgagtttctcaggctcatagcagtcctcgccatcgctacctccgtcgctttcaccgtcaatttcttctactccgctttcttcaacccccaatttaagcccttctgcgatggccccgacgactccctcgacttcatctccgattattgtgagccgtgtccgagtcatggacgatgccaggaaggccagttggaatgtgatcaaggatataaaaagcatgggaagttatgcgtagaagatggagttattcaggacacggctacgaaacttgtggaaagggtagaaattcgtctttgtaaagcgtatgctgaatttttgtgctatgggactggaacaatttgggttgaacagaatgacatatggaatgacttagataagaacgagctggcggaacatgttggctcagacaatgcaatttatatgtatgcaaaacaaagggcaatggagatgattaatagaatgttggacagaaggacaaattctctggggtatgtcattcctttaagagggaagcttgtccagtttctgaaatgtgctgtggttatcttattttatgcttactttctcggctcagacaatgcaatttatatgtatgcaaaacaaagggcaatggagatgattaatagaatgttggacagaaggacaaattctctgggggtcaaagagttgaagtgtcctgacatgctagcagaacgctacaaaccatcttcctgtcgcatccgtcaatggacctctgagcatgcattacttatttttccagtttgcgcagcgcttctgggattgatgttgttacttcggaaattccatcaaaggcagtatctatcgactagagttgacgagctttaccaacagatctgtgaagagctcgaggagaaagccttgatgaatagagagaatgataaatgtgaaccatgggttgttgcttctgcattgcgtgattctcttctttccctgaaagagaggaagaaccctgtattgtggaaaaaggtagaagagttgattcaggaagattcccgtgtggatcgttatccaaagttggtgaaaggtgaatcaaaagtagtatgggaatggcaagttgaaggatctttgagctcctcgaggaaaagtagaaagggtgagtctagcaaattgaagtccagcaaaggtgcagaaaggagtcctgatcaacatctccattcactcaaggctgaccaaaggcaattgaattttgatacaacgatgttgaggcagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MSC

Protein Analysis

446

Amino Acids

51.47

Weight (kDa)

8.69

Isoelectric Point (pI)

39.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MSC PF09402 274 - 393 1.5e-14 Man1-Src1p-C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011342)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G46560
fragaria_vesca FvH4_5g21210 FvH4_5g21210 FvH4_5g21210 FvH4_5g21210
malus_domestica MD06G1040000.v1.1
prunus_persica Prupe.5G046100_v2.0.a1 Prupe.5G046100_v2.0.a1
pyrus_communis pycom06g03340
rosa_chinensis RchiOBHm_Chr7g0208351
rosa_laevigata RLG00000003220
rosa_multiflora Rmu_sc0006741.1_g000001 Rmu_ssc0000063.1_g000001
rosa_roxburghii Rroxscaffold_3G00250530
rosa_rugosa Rorug07G0103800
rosa_samantha Rh7AG238200 Rh7BG233700 Rh7CG253700 Rh7DG243900
rosa_wichuraiana Rw7G020300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 1204
Acc16I TGCGCA 1 cut(s) 874
AciI CCGC 2 cut(s) 183, 497
AclWI GGATC 2 cut(s) 1137, 1198
AcsI RAATTY 6 cut(s) 393, 419, 586, 754, 908, 1312
AfeI AGCGCT 1 cut(s) 879
AfiI CCNNNNNNNGG 3 cut(s) 39, 275, 614
AflIII ACRYGT 1 cut(s) 502
AgsI TTSAA 6 cut(s) 193, 455, 778, 1187, 1240, 1312
AjnI CCWGG 2 cut(s) 38, 285
AluBI AGCT 5 cut(s) 493, 622, 949, 973, 1200
AluI AGCT 5 cut(s) 493, 622, 949, 973, 1200
Alw21I GWGCWC 2 cut(s) 975, 1202
Alw26I GTCTC 1 cut(s) 98
AlwI GGATC 2 cut(s) 1137, 1198
AlwNI CAGNNNCTG 1 cut(s) 634
Ama87I CYCGRG 3 cut(s) 88, 974, 1204
Aor51HI AGCGCT 1 cut(s) 879
AoxI GGCC 3 cut(s) 41, 220, 292
ApeKI GCWGC 1 cut(s) 875
ApoI RAATTY 6 cut(s) 393, 419, 586, 754, 908, 1312
AseI ATTAAT 2 cut(s) 561, 729
AspLEI GCGC 3 cut(s) 24, 875, 880
AspS9I GGNCC 2 cut(s) 221, 837
AsuHPI GGTGA 4 cut(s) 154, 1159, 1166, 1235
AsuNHI GCTAGC 1 cut(s) 793
AvaI CYCGRG 3 cut(s) 88, 974, 1204
AvaII GGWCC 1 cut(s) 837
BanII GRGCYC 2 cut(s) 975, 1202
Bbv12I GWGCWC 2 cut(s) 975, 1202
BbvI GCAGC 1 cut(s) 887
BccI CCATC 5 cut(s) 149, 212, 341, 820, 921
BceAI ACGGC 2 cut(s) 247, 381
BciT130I CCWGG 2 cut(s) 40, 287
BclI TGATCA 2 cut(s) 307, 1270
BcoDI GTCTC 1 cut(s) 98
BfaI CTAG 3 cut(s) 794, 936, 1230
BfoI RGCGCY 2 cut(s) 25, 881
BglI GCCNNNNNGGC 1 cut(s) 291
BglII AGATCT 1 cut(s) 960
BisI GCNGC 1 cut(s) 876
BlsI GCNGC 1 cut(s) 877
Bme1390I CCNGG 2 cut(s) 40, 287
Bme18I GGWCC 1 cut(s) 837
BmeT110I CYCGRG 3 cut(s) 88, 974, 1204
BmgT120I GGNCC 2 cut(s) 221, 837
BmiI GGNNCC 1 cut(s) 223
BmrFI CCNGG 2 cut(s) 40, 287
BmsI GCATC 2 cut(s) 272, 834
BmtI GCTAGC 1 cut(s) 797
BpuEI CTTGAG 1 cut(s) 1274
BsaBI GATNNNNATC 2 cut(s) 1134, 1275
BsaJI CCNNGG 3 cut(s) 38, 105, 1019
BsaXI ACNNNNNCTCC 2 cut(s) 230, 260
Bsc4I CCNNNNNNNGG 3 cut(s) 39, 275, 614
Bse1I ACTGG 4 cut(s) 295, 442, 628, 866
Bse3DI GCAATG 3 cut(s) 555, 723, 1037
Bse8I GATNNNNATC 2 cut(s) 1134, 1275
BseBI CCWGG 2 cut(s) 40, 287
BseDI CCNNGG 3 cut(s) 38, 105, 1019
BseGI GGATG 1 cut(s) 825
BseJI GATNNNNATC 2 cut(s) 1134, 1275
BseLI CCNNNNNNNGG 3 cut(s) 39, 275, 614
BseMI GCAATG 3 cut(s) 555, 723, 1037
BseMII CTCAG 4 cut(s) 133, 525, 693, 834
BseNI ACTGG 4 cut(s) 295, 442, 628, 866
BseRI GAGGAG 3 cut(s) 65, 992, 1192
BseXI GCAGC 1 cut(s) 887
BsgI GTGCAG 1 cut(s) 1275
BshFI GGCC 3 cut(s) 43, 222, 294
BsiHKAI GWGCWC 2 cut(s) 975, 1202
BsiHKCI CYCGRG 3 cut(s) 88, 974, 1204
BslFI GGGAC 1 cut(s) 448
BslI CCNNNNNNNGG 3 cut(s) 39, 275, 614
BsmAI GTCTC 1 cut(s) 98
BsmFI GGGAC 1 cut(s) 448
BsnI GGCC 3 cut(s) 43, 222, 294
BsoBI CYCGRG 3 cut(s) 88, 974, 1204
Bsp1286I GDGCHC 2 cut(s) 975, 1202
Bsp143I GATC 5 cut(s) 307, 960, 1129, 1190, 1270
Bsp19I CCATGG 1 cut(s) 1019
BspACI CCGC 2 cut(s) 183, 497
BspANI GGCC 3 cut(s) 43, 222, 294
BspCNI CTCAG 4 cut(s) 132, 524, 692, 835
BspLI GGNNCC 1 cut(s) 223
BspOI GCTAGC 1 cut(s) 797
BspPI GGATC 2 cut(s) 1137, 1198
BspQI GCTCTTC 1 cut(s) 963
BsrDI GCAATG 3 cut(s) 555, 723, 1037
BsrI ACTGG 4 cut(s) 295, 442, 628, 866
BssECI CCNNGG 3 cut(s) 38, 105, 1019
BssMI GATC 5 cut(s) 307, 960, 1129, 1190, 1270
BssT1I CCWWGG 2 cut(s) 105, 1019
Bst2UI CCWGG 2 cut(s) 40, 287
Bst4CI ACNGT 1 cut(s) 166
Bst6I CTCTTC 3 cut(s) 963, 1056, 1095
BstC8I GCNNGC 3 cut(s) 495, 795, 849
BstDEI CTNAG 5 cut(s) 119, 478, 511, 679, 843
BstDSI CCRYGG 1 cut(s) 1019
BstENI CCTNNNNNAGG 1 cut(s) 612
BstF5I GGATG 1 cut(s) 825
BstH2I RGCGCY 2 cut(s) 25, 881
BstHHI GCGC 3 cut(s) 24, 875, 880
BstKTI GATC 5 cut(s) 310, 963, 1132, 1193, 1273
BstMAI GTCTC 1 cut(s) 98
BstMBI GATC 5 cut(s) 307, 960, 1129, 1190, 1270
BstMWI GCNNNNNNNGC 2 cut(s) 137, 291
BstNI CCWGG 2 cut(s) 40, 287
BstNSI RCATGY 3 cut(s) 506, 793, 851
BstSCI CCNGG 2 cut(s) 38, 285
BstV1I GCAGC 1 cut(s) 887
BstX2I RGATCY 2 cut(s) 960, 1190
BstYI RGATCY 2 cut(s) 960, 1190
BsuRI GGCC 3 cut(s) 43, 222, 294
BtgI CCRYGG 1 cut(s) 1019
BtgZI GCGATG 2 cut(s) 127, 231
BtsCI GGATG 1 cut(s) 825
Cac8I GCNNGC 3 cut(s) 495, 795, 849
CaiI CAGNNNCTG 1 cut(s) 634
CfoI GCGC 3 cut(s) 24, 875, 880
Cfr13I GGNCC 2 cut(s) 221, 837
CviAII CATG 6 cut(s) 275, 326, 503, 790, 848, 1020
DdeI CTNAG 5 cut(s) 119, 478, 511, 679, 843
DpnI GATC 5 cut(s) 309, 962, 1131, 1192, 1272
DpnII GATC 5 cut(s) 307, 960, 1129, 1190, 1270
Eam1104I CTCTTC 3 cut(s) 963, 1056, 1095
EarI CTCTTC 3 cut(s) 963, 1056, 1095
EciI GGCGGA 1 cut(s) 512
Ecl136II GAGCTC 2 cut(s) 973, 1200
Eco130I CCWWGG 2 cut(s) 105, 1019
Eco147I AGGCCT 1 cut(s) 43
Eco24I GRGCYC 2 cut(s) 975, 1202
Eco47I GGWCC 1 cut(s) 837
Eco47III AGCGCT 1 cut(s) 879
Eco53kI GAGCTC 2 cut(s) 973, 1200
Eco88I CYCGRG 3 cut(s) 88, 974, 1204
EcoICRI GAGCTC 2 cut(s) 973, 1200
EcoNI CCTNNNNNAGG 1 cut(s) 612
EcoRII CCWGG 2 cut(s) 38, 285
EcoT14I CCWWGG 2 cut(s) 105, 1019
EcoT22I ATGCAT 1 cut(s) 853
EcoT38I GRGCYC 2 cut(s) 975, 1202
ErhI CCWWGG 2 cut(s) 105, 1019
FaeI CATG 6 cut(s) 278, 329, 506, 793, 851, 1023
FaqI GGGAC 1 cut(s) 448
FatI CATG 6 cut(s) 274, 325, 502, 789, 847, 1019
FauNDI CATATG 1 cut(s) 467
FbaI TGATCA 2 cut(s) 307, 1270
Fnu4HI GCNGC 1 cut(s) 876
FokI GGATG 1 cut(s) 812
FriOI GRGCYC 2 cut(s) 975, 1202
Fsp4HI GCNGC 1 cut(s) 876
FspBI CTAG 3 cut(s) 794, 936, 1230
FspI TGCGCA 1 cut(s) 874
GlaI GCGC 3 cut(s) 23, 874, 879
GluI GCNGC 1 cut(s) 876
HaeII RGCGCY 2 cut(s) 25, 881
HaeIII GGCC 3 cut(s) 43, 222, 294
HhaI GCGC 3 cut(s) 24, 875, 880
Hin1II CATG 6 cut(s) 278, 329, 506, 793, 851, 1023
Hin6I GCGC 3 cut(s) 22, 873, 878
HinP1I GCGC 3 cut(s) 22, 873, 878
HincII GTYRAC 1 cut(s) 943
HindII GTYRAC 1 cut(s) 943
HindIII AAGCTT 1 cut(s) 620
HphI GGTGA 4 cut(s) 154, 1159, 1166, 1235
Hpy166II GTNNAC 2 cut(s) 943, 1016
Hpy188I TCNGA 7 cut(s) 250, 270, 514, 636, 682, 844, 906
Hpy188III TCNNGA 4 cut(s) 359, 785, 1112, 1268
Hpy8I GTNNAC 2 cut(s) 943, 1016
Hpy99I CGWCG 2 cut(s) 158, 230
HpyAV CCTTC 6 cut(s) 66, 220, 284, 573, 741, 1181
HpyCH4III ACNGT 1 cut(s) 166
HpyCH4V TGCA 7 cut(s) 521, 536, 689, 704, 851, 1037, 1256
HpyF10VI GCNNNNNNNGC 2 cut(s) 137, 291
HpyF3I CTNAG 5 cut(s) 119, 478, 511, 679, 843
Hsp92II CATG 6 cut(s) 278, 329, 506, 793, 851, 1023
HspAI GCGC 3 cut(s) 22, 873, 878
Ksp22I TGATCA 2 cut(s) 307, 1270
Kzo9I GATC 5 cut(s) 307, 960, 1129, 1190, 1270
LguI GCTCTTC 1 cut(s) 963
LmnI GCTCC 1 cut(s) 1205
Lsp1109I GCAGC 1 cut(s) 887
LweI GCATC 2 cut(s) 272, 834
MaeI CTAG 3 cut(s) 794, 936, 1230
MaeIII GTNAC 1 cut(s) 897
MalI GATC 5 cut(s) 309, 962, 1131, 1192, 1272
MboI GATC 5 cut(s) 307, 960, 1129, 1190, 1270
MfeI CAATTG 1 cut(s) 1307
MflI RGATCY 2 cut(s) 960, 1190
MhlI GDGCHC 2 cut(s) 975, 1202
MlyI GAGTC 6 cut(s) 4, 100, 224, 280, 1235, 1273
MmeI TCCRAC 3 cut(s) 279, 552, 720
Mph1103I ATGCAT 1 cut(s) 853
MseI TTAA 4 cut(s) 204, 561, 611, 729
MspR9I CCNGG 2 cut(s) 40, 287
MteI GCGCNGCGC 1 cut(s) 876
MunI CAATTG 1 cut(s) 1307
MvaI CCWGG 2 cut(s) 40, 287
MwoI GCNNNNNNNGC 2 cut(s) 137, 291
NcoI CCATGG 1 cut(s) 1019
NdeI CATATG 1 cut(s) 467
NdeII GATC 5 cut(s) 307, 960, 1129, 1190, 1270
NheI GCTAGC 1 cut(s) 793
NlaIII CATG 6 cut(s) 278, 329, 506, 793, 851, 1023
NlaIV GGNNCC 1 cut(s) 223
NmeAIII GCCGAG 1 cut(s) 654
NsbI TGCGCA 1 cut(s) 874
NsiI ATGCAT 1 cut(s) 853
NspI RCATGY 3 cut(s) 506, 793, 851
PaeI GCATGC 1 cut(s) 851
PaeR7I CTCGAG 2 cut(s) 974, 1204
PceI AGGCCT 1 cut(s) 43
PciI ACATGT 1 cut(s) 502
PciSI GCTCTTC 1 cut(s) 963
PcsI WCGNNNNNNNCGW 3 cut(s) 150, 162, 234
PfeI GAWTC 5 cut(s) 64, 1046, 1108, 1118, 1157
PkrI GCNGC 1 cut(s) 877
PleI GAGTC 6 cut(s) 4, 99, 224, 279, 1234, 1272
PpsI GAGTC 6 cut(s) 4, 99, 224, 279, 1234, 1272
PscI ACATGT 1 cut(s) 502
PshBI ATTAAT 2 cut(s) 561, 729
Psp124BI GAGCTC 2 cut(s) 975, 1202
Psp6I CCWGG 2 cut(s) 38, 285
PspGI CCWGG 2 cut(s) 38, 285
PspN4I GGNNCC 1 cut(s) 223
PspPI GGNCC 2 cut(s) 221, 837
PspXI VCTCGAGB 2 cut(s) 974, 1204
PstNI CAGNNNCTG 1 cut(s) 634
PsuI RGATCY 2 cut(s) 960, 1190
SacI GAGCTC 2 cut(s) 975, 1202
SapI GCTCTTC 1 cut(s) 963
SaqAI TTAA 4 cut(s) 204, 561, 611, 729
SatI GCNGC 1 cut(s) 876
Sau3AI GATC 5 cut(s) 307, 960, 1129, 1190, 1270
Sau96I GGNCC 2 cut(s) 221, 837
SchI GAGTC 6 cut(s) 4, 100, 224, 280, 1235, 1273
ScrFI CCNGG 2 cut(s) 40, 287
SduI GDGCHC 2 cut(s) 975, 1202
SfaNI GCATC 2 cut(s) 272, 834
Sfr274I CTCGAG 2 cut(s) 974, 1204
SinI GGWCC 1 cut(s) 837
SlaI CTCGAG 2 cut(s) 974, 1204
SmlI CTYRAG 3 cut(s) 974, 1204, 1289
SmoI CTYRAG 3 cut(s) 974, 1204, 1289
SphI GCATGC 1 cut(s) 851
SseBI AGGCCT 1 cut(s) 43
SsiI CCGC 2 cut(s) 183, 497
SspMI CTAG 3 cut(s) 794, 936, 1230
SstI GAGCTC 2 cut(s) 975, 1202
StuI AGGCCT 1 cut(s) 43
StyD4I CCNGG 2 cut(s) 38, 285
StyI CCWWGG 2 cut(s) 105, 1019
TaaI ACNGT 1 cut(s) 166
TaqI TCGA 7 cut(s) 8, 62, 78, 237, 932, 975, 1205
TfiI GAWTC 5 cut(s) 64, 1046, 1108, 1118, 1157
Tru1I TTAA 4 cut(s) 204, 561, 611, 729
Tru9I TTAA 4 cut(s) 204, 561, 611, 729
TseI GCWGC 1 cut(s) 875
TspDTI ATGAA 2 cut(s) 232, 1007
TspGWI ACGGA 2 cut(s) 142, 818
VpaK11BI GGWCC 1 cut(s) 837
VspI ATTAAT 2 cut(s) 561, 729
XagI CCTNNNNNAGG 1 cut(s) 612
XapI RAATTY 6 cut(s) 393, 419, 586, 754, 908, 1312
XceI RCATGY 3 cut(s) 506, 793, 851
XhoI CTCGAG 2 cut(s) 974, 1204
XspI CTAG 3 cut(s) 794, 936, 1230
Zsp2I ATGCAT 1 cut(s) 853
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.