Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000126.1

Orthogroup ID

OG0018882

Physical Location & Seq

Genomic Coordinates Forward (+)

22009 .. 27613

Gene Structure 5605 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

atgaaaaccgaacctttgacgacgagatggggaccggaggtggccggaatcgcaggaaatcggcaaaaacttcaaactgtagccgaggggaatttggcttcgatccgagcttttccggccaaatcgttgaaaacgaaggttaccagggtgttgggagggaggaggcgctcctctagtgaccggttgcacgccgctagatatagctctgcgccaacgcgacgccattggattggtgtaaaagatatctttcgatatttgagatgtacgattgatattggcttgttctatccctacaaagagatgatggattcagacccatcacacaccaggtacgccgccaacgctggcctgcgttctctatccccatcccaaaacgacatgtgttttggaagtcatcagggggaggcgcagacatcagggggagatgtctacatgttcaccccgaaacgtgaagggaagaaaaatgggggagagccacaacaacctccaccaccgcgcaatgacgtcgtcttccgctgcttctcgattgggtttgggtataaggactgcttcttcctccaccgccagcgaaatagtggaggctcgaggccacattctaagggccaccgaccggaaggaccgtcacagcaaggtctacacagccaaagccccagggaccaccgcgtcaggctcggatacgaccggcccagcaaggccgtcgattgggtcatcaagaaagccaaggccacaatcgacgagctcgacgagctgccgccgtggaacccaaactcaatttctgttcagacaacatcttcttcgacggtgcatatatccgtcatgcaggacacgcagaacgcgagcctccatttctcgatggtggaggctctgagttctttgtctgctaatcgacgaggcgcaatggtgggtagcagcggagtggcggagctggtgaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0042221 GO:0045962 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

311

Amino Acids

34.44

Weight (kDa)

10.01

Isoelectric Point (pI)

53.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	223 - 282	1.4e-06	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018882)

Species	Orthologous Gene IDs
malus_domestica	MD06G1235000.v1.1 MD06G1235200.v1.1
rosa_multiflora	Rmu_co8090820.1_g000001 Rmu_sc0000016.1_g000004 Rmu_sc0000112.1_g000027 Rmu_sc0009988.1_g000017 Rmu_sc0019843.1_g000001 Rmu_sc0040871.1_g000001 Rmu_ssc0000126.1_g000005

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	662
AatII	GACGTC	1 cut(s)	507
AccI	GTMKAC	2 cut(s)	429, 634
AccII	CGCG	4 cut(s)	217, 496, 663, 836
AciI	CCGC	9 cut(s)	192, 336, 494, 514, 562, 661, 752, 912, 920
AclWI	GGATC	1 cut(s)	97
AcoI	YGGCCR	2 cut(s)	42, 117
AcsI	RAATTY	1 cut(s)	91
AcyI	GRCGYC	2 cut(s)	220, 504
AfaI	GTAC	2 cut(s)	265, 332
AfiI	CCNNNNNNNGG	2 cut(s)	610, 702
AflIII	ACRYGT	2 cut(s)	378, 432
AgeI	ACCGGT	1 cut(s)	180
AgsI	TTSAA	2 cut(s)	74, 130
AjnI	CCWGG	3 cut(s)	143, 326, 650
AjuI	GAANNNNNNNTTGG	2 cut(s)	757, 789
AluBI	AGCT	5 cut(s)	110, 204, 739, 748, 925
AluI	AGCT	5 cut(s)	110, 204, 739, 748, 925
Alw21I	GWGCWC	1 cut(s)	741
AlwI	GGATC	1 cut(s)	97
Ama87I	CYCGRG	1 cut(s)	583
AoxI	GGCC	8 cut(s)	42, 117, 346, 587, 601, 683, 693, 723
ApeKI	GCWGC	3 cut(s)	516, 748, 909
ApoI	RAATTY	1 cut(s)	91
ArsI	GACNNNNNNTTYG	2 cut(s)	368, 400
AsiGI	ACCGGT	1 cut(s)	180
AspLEI	GCGC	5 cut(s)	168, 211, 409, 498, 896
AspS9I	GGNCC	5 cut(s)	32, 601, 617, 655, 684
AsuHPI	GGTGA	1 cut(s)	430
AvaI	CYCGRG	1 cut(s)	583
AvaII	GGWCC	3 cut(s)	32, 617, 655
BanII	GRGCYC	1 cut(s)	741
BbsI	GAAGAC	1 cut(s)	502
Bbv12I	GWGCWC	1 cut(s)	741
BbvI	GCAGC	3 cut(s)	503, 735, 921
BccI	CCATC	5 cut(s)	21, 298, 325, 373, 847
BceAI	ACGGC	2 cut(s)	680, 739
BcgI	CGANNNNNNTGC	4 cut(s)	487, 521, 679, 713
BciT130I	CCWGG	3 cut(s)	145, 328, 652
BciVI	GTATCC	1 cut(s)	668
BfaI	CTAG	2 cut(s)	174, 195
BfmI	CTRYAG	1 cut(s)	78
BfoI	RGCGCY	1 cut(s)	169
BfuI	GTATCC	1 cut(s)	668
BisI	GCNGC	6 cut(s)	192, 336, 517, 749, 752, 910
BlsI	GCNGC	6 cut(s)	193, 337, 518, 750, 753, 911
Bme1390I	CCNGG	3 cut(s)	145, 328, 652
Bme18I	GGWCC	3 cut(s)	32, 617, 655
BmeT110I	CYCGRG	1 cut(s)	583
BmgT120I	GGNCC	5 cut(s)	32, 601, 617, 655, 684
BmiI	GGNNCC	3 cut(s)	33, 656, 761
BmrFI	CCNGG	3 cut(s)	145, 328, 652
BpiI	GAAGAC	1 cut(s)	502
BsaHI	GRCGYC	2 cut(s)	220, 504
BsaJI	CCNNGG	6 cut(s)	84, 144, 650, 651, 720, 755
BsaWI	WCCGGW	3 cut(s)	34, 180, 610
Bsc4I	CCNNNNNNNGG	2 cut(s)	610, 702
Bse118I	RCCGGY	2 cut(s)	180, 681
Bse3DI	GCAATG	2 cut(s)	505, 903
BseBI	CCWGG	3 cut(s)	145, 328, 652
BseDI	CCNNGG	6 cut(s)	84, 144, 650, 651, 720, 755
BseGI	GGATG	1 cut(s)	365
BseLI	CCNNNNNNNGG	2 cut(s)	610, 702
BseMI	GCAATG	2 cut(s)	505, 903
BseMII	CTCAG	1 cut(s)	857
BseRI	GAGGAG	2 cut(s)	160, 175
BseXI	GCAGC	3 cut(s)	503, 735, 921
BseYI	CCCAGC	1 cut(s)	686
Bsh1236I	CGCG	4 cut(s)	217, 496, 663, 836
Bsh1285I	CGRYCG	2 cut(s)	611, 682
BshFI	GGCC	8 cut(s)	44, 119, 348, 589, 603, 685, 695, 725
BshTI	ACCGGT	1 cut(s)	180
BsiEI	CGRYCG	2 cut(s)	611, 682
BsiHKAI	GWGCWC	1 cut(s)	741
BsiHKCI	CYCGRG	1 cut(s)	583
BsiSI	CCGG	6 cut(s)	35, 45, 116, 181, 611, 682
BslFI	GGGAC	2 cut(s)	45, 668
BslI	CCNNNNNNNGG	2 cut(s)	610, 702
BsmFI	GGGAC	2 cut(s)	45, 668
BsnI	GGCC	8 cut(s)	44, 119, 348, 589, 603, 685, 695, 725
BsoBI	CYCGRG	1 cut(s)	583
Bsp1286I	GDGCHC	1 cut(s)	741
Bsp143I	GATC	1 cut(s)	102
BspACI	CCGC	9 cut(s)	192, 336, 494, 514, 562, 661, 752, 912, 920
BspANI	GGCC	8 cut(s)	44, 119, 348, 589, 603, 685, 695, 725
BspCNI	CTCAG	1 cut(s)	858
BspFNI	CGCG	4 cut(s)	217, 496, 663, 836
BspLI	GGNNCC	3 cut(s)	33, 656, 761
BspPI	GGATC	1 cut(s)	97
BsrDI	GCAATG	2 cut(s)	505, 903
BsrFI	RCCGGY	2 cut(s)	180, 681
BssAI	RCCGGY	2 cut(s)	180, 681
BssECI	CCNNGG	6 cut(s)	84, 144, 650, 651, 720, 755
BssMI	GATC	1 cut(s)	102
BssNI	GRCGYC	2 cut(s)	220, 504
BssT1I	CCWWGG	1 cut(s)	720
Bst2UI	CCWGG	3 cut(s)	145, 328, 652
Bst4CI	ACNGT	3 cut(s)	79, 621, 802
BstACI	GRCGYC	2 cut(s)	220, 504
BstC8I	GCNNGC	5 cut(s)	189, 346, 350, 566, 838
BstDEI	CTNAG	2 cut(s)	597, 866
BstDSI	CCRYGG	1 cut(s)	755
BstEII	GGTNACC	1 cut(s)	139
BstF5I	GGATG	1 cut(s)	365
BstFNI	CGCG	4 cut(s)	217, 496, 663, 836
BstH2I	RGCGCY	1 cut(s)	169
BstHHI	GCGC	5 cut(s)	168, 211, 409, 498, 896
BstKTI	GATC	1 cut(s)	105
BstMBI	GATC	1 cut(s)	102
BstMCI	CGRYCG	2 cut(s)	611, 682
BstMWI	GCNNNNNNNGC	5 cut(s)	50, 116, 341, 745, 826
BstNI	CCWGG	3 cut(s)	145, 328, 652
BstNSI	RCATGY	2 cut(s)	382, 436
BstPI	GGTNACC	1 cut(s)	139
BstSCI	CCNGG	3 cut(s)	143, 326, 650
BstSFI	CTRYAG	1 cut(s)	78
BstUI	CGCG	4 cut(s)	217, 496, 663, 836
BstV1I	GCAGC	3 cut(s)	503, 735, 921
BstV2I	GAAGAC	1 cut(s)	502
BstXI	CCANNNNNNTGG	2 cut(s)	151, 230
BsuI	GTATCC	1 cut(s)	668
BsuRI	GGCC	8 cut(s)	44, 119, 348, 589, 603, 685, 695, 725
BtgI	CCRYGG	1 cut(s)	755
BtsCI	GGATG	1 cut(s)	365
Cac8I	GCNNGC	5 cut(s)	189, 346, 350, 566, 838
CfoI	GCGC	5 cut(s)	168, 211, 409, 498, 896
Cfr10I	RCCGGY	2 cut(s)	180, 681
Cfr13I	GGNCC	5 cut(s)	32, 601, 617, 655, 684
CseI	GACGC	2 cut(s)	228, 652
CsiI	ACCWGGT	1 cut(s)	326
Csp6I	GTAC	2 cut(s)	264, 331
CspAI	ACCGGT	1 cut(s)	180
CviAII	CATG	3 cut(s)	379, 433, 817
CviQI	GTAC	2 cut(s)	264, 331
DdeI	CTNAG	2 cut(s)	597, 866
DpnI	GATC	1 cut(s)	104
DpnII	GATC	1 cut(s)	102
DrdI	GACNNNNNNGTC	1 cut(s)	662
DseDI	GACNNNNNNGTC	1 cut(s)	662
EaeI	YGGCCR	2 cut(s)	42, 117
EciI	GGCGGA	1 cut(s)	935
Ecl136II	GAGCTC	1 cut(s)	739
Eco130I	CCWWGG	1 cut(s)	720
Eco24I	GRGCYC	1 cut(s)	741
Eco32I	GATATC	1 cut(s)	244
Eco47I	GGWCC	3 cut(s)	32, 617, 655
Eco53kI	GAGCTC	1 cut(s)	739
Eco88I	CYCGRG	1 cut(s)	583
Eco91I	GGTNACC	1 cut(s)	139
EcoICRI	GAGCTC	1 cut(s)	739
EcoO65I	GGTNACC	1 cut(s)	139
EcoRII	CCWGG	3 cut(s)	143, 326, 650
EcoRV	GATATC	1 cut(s)	244
EcoT14I	CCWWGG	1 cut(s)	720
EcoT38I	GRGCYC	1 cut(s)	741
ErhI	CCWWGG	1 cut(s)	720
FaeI	CATG	3 cut(s)	382, 436, 820
FaiI	YATR	7 cut(s)	201, 380, 434, 540, 807, 809, 818
FalI	AAGNNNNNCTT	2 cut(s)	533, 565
FaqI	GGGAC	2 cut(s)	45, 668
FatI	CATG	3 cut(s)	378, 432, 816
FblI	GTMKAC	2 cut(s)	429, 634
Fnu4HI	GCNGC	6 cut(s)	192, 336, 517, 749, 752, 910
FokI	GGATG	1 cut(s)	352
FriOI	GRGCYC	1 cut(s)	741
Fsp4HI	GCNGC	6 cut(s)	192, 336, 517, 749, 752, 910
FspBI	CTAG	2 cut(s)	174, 195
GlaI	GCGC	5 cut(s)	167, 210, 408, 497, 895
GluI	GCNGC	6 cut(s)	192, 336, 517, 749, 752, 910
GsaI	CCCAGC	1 cut(s)	690
HaeII	RGCGCY	1 cut(s)	169
HaeIII	GGCC	8 cut(s)	44, 119, 348, 589, 603, 685, 695, 725
HapII	CCGG	6 cut(s)	35, 45, 116, 181, 611, 682
HgaI	GACGC	2 cut(s)	228, 652
HhaI	GCGC	5 cut(s)	168, 211, 409, 498, 896
Hin1I	GRCGYC	2 cut(s)	220, 504
Hin1II	CATG	3 cut(s)	382, 436, 820
Hin6I	GCGC	5 cut(s)	166, 209, 407, 496, 894
HinP1I	GCGC	5 cut(s)	166, 209, 407, 496, 894
HinfI	GANTC	2 cut(s)	48, 308
HpaII	CCGG	6 cut(s)	35, 45, 116, 181, 611, 682
HphI	GGTGA	1 cut(s)	430
Hpy166II	GTNNAC	3 cut(s)	430, 438, 635
Hpy188I	TCNGA	5 cut(s)	107, 313, 674, 783, 867
Hpy188III	TCNNGA	3 cut(s)	523, 712, 850
Hpy8I	GTNNAC	3 cut(s)	430, 438, 635
Hpy99I	CGWCG	8 cut(s)	25, 222, 509, 701, 737, 746, 802, 891
HpyAV	CCTTC	3 cut(s)	130, 446, 608
HpyCH4III	ACNGT	3 cut(s)	79, 621, 802
HpyCH4IV	ACGT	2 cut(s)	448, 504
HpyCH4V	TGCA	3 cut(s)	187, 805, 820
HpyF10VI	GCNNNNNNNGC	5 cut(s)	50, 116, 341, 745, 826
HpyF3I	CTNAG	2 cut(s)	597, 866
HpySE526I	ACGT	2 cut(s)	448, 504
Hsp92I	GRCGYC	2 cut(s)	220, 504
Hsp92II	CATG	3 cut(s)	382, 436, 820
HspAI	GCGC	5 cut(s)	166, 209, 407, 496, 894
Kzo9I	GATC	1 cut(s)	102
LmnI	GCTCC	2 cut(s)	173, 922
Lsp1109I	GCAGC	3 cut(s)	503, 735, 921
MabI	ACCWGGT	1 cut(s)	326
MaeI	CTAG	2 cut(s)	174, 195
MaeII	ACGT	2 cut(s)	448, 504
MaeIII	GTNAC	3 cut(s)	139, 176, 621
MalI	GATC	1 cut(s)	104
MboI	GATC	1 cut(s)	102
MboII	GAAGA	5 cut(s)	469, 502, 544, 783, 786
MhlI	GDGCHC	1 cut(s)	741
MluCI	AATT	3 cut(s)	91, 771, 931
MspA1I	CMGCKG	2 cut(s)	516, 912
MspI	CCGG	6 cut(s)	35, 45, 116, 181, 611, 682
MspR9I	CCNGG	3 cut(s)	145, 328, 652
MvaI	CCWGG	3 cut(s)	145, 328, 652
MvnI	CGCG	4 cut(s)	217, 496, 663, 836
MwoI	GCNNNNNNNGC	5 cut(s)	50, 116, 341, 745, 826
NdeII	GATC	1 cut(s)	102
NlaIII	CATG	3 cut(s)	382, 436, 820
NlaIV	GGNNCC	3 cut(s)	33, 656, 761
NmeAIII	GCCGAG	1 cut(s)	109
NmuCI	GTSAC	2 cut(s)	176, 621
NspI	RCATGY	2 cut(s)	382, 436
PaeR7I	CTCGAG	1 cut(s)	583
PasI	CCCWGGG	1 cut(s)	651
PciI	ACATGT	2 cut(s)	378, 432
PcsI	WCGNNNNNNNCGW	4 cut(s)	131, 738, 741, 833
PfeI	GAWTC	2 cut(s)	48, 308
PflFI	GACNNNGTC	1 cut(s)	506
PinAI	ACCGGT	1 cut(s)	180
PkrI	GCNGC	6 cut(s)	193, 337, 518, 750, 753, 911
PscI	ACATGT	2 cut(s)	378, 432
Psp124BI	GAGCTC	1 cut(s)	741
Psp6I	CCWGG	3 cut(s)	143, 326, 650
PspEI	GGTNACC	1 cut(s)	139
PspFI	CCCAGC	1 cut(s)	686
PspGI	CCWGG	3 cut(s)	143, 326, 650
PspN4I	GGNNCC	3 cut(s)	33, 656, 761
PspPI	GGNCC	5 cut(s)	32, 601, 617, 655, 684
PspXI	VCTCGAGB	1 cut(s)	583
PsyI	GACNNNGTC	1 cut(s)	506
RsaI	GTAC	2 cut(s)	265, 332
RsaNI	GTAC	2 cut(s)	264, 331
SacI	GAGCTC	1 cut(s)	741
SatI	GCNGC	6 cut(s)	192, 336, 517, 749, 752, 910
Sau3AI	GATC	1 cut(s)	102
Sau96I	GGNCC	5 cut(s)	32, 601, 617, 655, 684
ScrFI	CCNGG	3 cut(s)	145, 328, 652
SduI	GDGCHC	1 cut(s)	741
SexAI	ACCWGGT	1 cut(s)	326
SfcI	CTRYAG	1 cut(s)	78
Sfr274I	CTCGAG	1 cut(s)	583
SinI	GGWCC	3 cut(s)	32, 617, 655
SlaI	CTCGAG	1 cut(s)	583
SmlI	CTYRAG	1 cut(s)	583
SmoI	CTYRAG	1 cut(s)	583
Sse9I	AATT	3 cut(s)	91, 771, 931
SsiI	CCGC	9 cut(s)	192, 336, 494, 514, 562, 661, 752, 912, 920
SspMI	CTAG	2 cut(s)	174, 195
SstI	GAGCTC	1 cut(s)	741
StyD4I	CCNGG	3 cut(s)	143, 326, 650
StyI	CCWWGG	1 cut(s)	720
TaaI	ACNGT	3 cut(s)	79, 621, 802
TaiI	ACGT	2 cut(s)	451, 507
TasI	AATT	3 cut(s)	91, 771, 931
TauI	GCSGC	3 cut(s)	194, 338, 754
TfiI	GAWTC	2 cut(s)	48, 308
TseFI	GTSAC	2 cut(s)	176, 621
TseI	GCWGC	3 cut(s)	516, 748, 909
Tsp45I	GTSAC	2 cut(s)	176, 621
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	802
Tth111I	GACNNNGTC	1 cut(s)	506
VpaK11BI	GGWCC	3 cut(s)	32, 617, 655
XapI	RAATTY	1 cut(s)	91
XceI	RCATGY	2 cut(s)	382, 436
XcmI	CCANNNNNNNNNTGG	1 cut(s)	572
XhoI	CTCGAG	1 cut(s)	583
XmiI	GTMKAC	2 cut(s)	429, 634
XspI	CTAG	2 cut(s)	174, 195
ZraI	GACGTC	1 cut(s)	505

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.