Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000189.1

Orthogroup ID

OG0019011

Physical Location & Seq

Genomic Coordinates Reverse (-)

225729 .. 226528

Gene Structure 800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

atggagttgtttggcctggaattgggatttgatggttttgggttttttgaagaaggttttgagcagggtttggatggagctcatggattgttgatggaagcttggacaagagaaggatgtgataaacgaaatctacaaaacccacgagtcaattcaaggcacatcagatctctagacaagcaaatggcgtcaattcagatgaaattagtagcagctcagagttctcaagtgaaggggggctatgatgactccaccgccacatcagtattgcagaaggataattcagcccagaagaaagcattcattgtcattggaattaacactactttgagtagtaggaagcggcaagattcggttagagagacttggatgcctcaaggtactttggcttcacctaggtggcatggtggggatggtggagatggtgaacaccacctgggtggatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008378 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048531

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

148

Amino Acids

16.27

Weight (kDa)

6.19

Isoelectric Point (pI)

56.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019011)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0439591 RchiOBHm_Chr5g0021871
rosa_multiflora	Rmu_ssc0000189.1_g000032
rosa_roxburghii	Rroxscaffold_3G00241670 Rroxscaffold_3G00250880
rosa_samantha	Rh2AG425700 Rh7AG335900 Rh7CG353600 Rh7DG332100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	255, 343
AcyI	GRCGYC	1 cut(s)	188
AfaI	GTAC	1 cut(s)	382
AfiI	CCNNNNNNNGG	1 cut(s)	22
AgsI	TTSAA	2 cut(s)	50, 156
AjnI	CCWGG	2 cut(s)	15, 435
AleI	CACNNNNGTG	2 cut(s)	397, 438
AluBI	AGCT	3 cut(s)	80, 101, 215
AluI	AGCT	3 cut(s)	80, 101, 215
Alw21I	GWGCWC	1 cut(s)	82
Alw26I	GTCTC	1 cut(s)	356
AoxI	GGCC	1 cut(s)	13
ApeKI	GCWGC	1 cut(s)	212
Asp700I	GAANNNNTTC	1 cut(s)	299
AspA2I	CCTAGG	1 cut(s)	395
AsuHPI	GGTGA	2 cut(s)	384, 437
AvrII	CCTAGG	1 cut(s)	395
BanII	GRGCYC	1 cut(s)	82
BarI	GAAGNNNNNNTAC	2 cut(s)	373, 405
BauI	CACGAG	1 cut(s)	144
Bbv12I	GWGCWC	1 cut(s)	82
BbvI	GCAGC	1 cut(s)	224
BccI	CCATC	5 cut(s)	26, 68, 88, 407, 416
BciT130I	CCWGG	2 cut(s)	17, 437
BcoDI	GTCTC	1 cut(s)	356
BfaI	CTAG	2 cut(s)	173, 396
BglII	AGATCT	1 cut(s)	167
BisI	GCNGC	2 cut(s)	213, 344
BlnI	CCTAGG	1 cut(s)	395
BlsI	GCNGC	2 cut(s)	214, 345
Bme1390I	CCNGG	2 cut(s)	17, 437
BmrFI	CCNGG	2 cut(s)	17, 437
BmsI	GCATC	1 cut(s)	360
BpuEI	CTTGAG	2 cut(s)	210, 360
BsaHI	GRCGYC	1 cut(s)	188
BsaJI	CCNNGG	2 cut(s)	395, 436
Bsc4I	CCNNNNNNNGG	1 cut(s)	22
BseBI	CCWGG	2 cut(s)	17, 437
BseDI	CCNNGG	2 cut(s)	395, 436
BseGI	GGATG	4 cut(s)	79, 122, 375, 418
BseLI	CCNNNNNNNGG	1 cut(s)	22
BseMII	CTCAG	1 cut(s)	230
BseXI	GCAGC	1 cut(s)	224
BshFI	GGCC	1 cut(s)	15
BsiHKAI	GWGCWC	1 cut(s)	82
BslI	CCNNNNNNNGG	1 cut(s)	22
BsmAI	GTCTC	1 cut(s)	356
BsmI	GAATGC	1 cut(s)	299
BsnI	GGCC	1 cut(s)	15
Bsp1286I	GDGCHC	1 cut(s)	82
Bsp143I	GATC	1 cut(s)	167
BspACI	CCGC	2 cut(s)	255, 343
BspANI	GGCC	1 cut(s)	15
BspCNI	CTCAG	1 cut(s)	229
BssECI	CCNNGG	2 cut(s)	395, 436
BssMI	GATC	1 cut(s)	167
BssNI	GRCGYC	1 cut(s)	188
BssSI	CACGAG	1 cut(s)	144
BssT1I	CCWWGG	1 cut(s)	395
Bst2BI	CACGAG	1 cut(s)	144
Bst2UI	CCWGG	2 cut(s)	17, 437
BstACI	GRCGYC	1 cut(s)	188
BstDEI	CTNAG	1 cut(s)	216
BstF5I	GGATG	4 cut(s)	79, 122, 375, 418
BstKTI	GATC	1 cut(s)	170
BstMAI	GTCTC	1 cut(s)	356
BstMBI	GATC	1 cut(s)	167
BstNI	CCWGG	2 cut(s)	17, 437
BstSCI	CCNGG	2 cut(s)	15, 435
BstV1I	GCAGC	1 cut(s)	224
BstX2I	RGATCY	1 cut(s)	167
BstXI	CCANNNNNNTGG	1 cut(s)	440
BstYI	RGATCY	1 cut(s)	167
BsuRI	GGCC	1 cut(s)	15
BtsCI	GGATG	4 cut(s)	79, 122, 375, 418
CseI	GACGC	1 cut(s)	177
Csp6I	GTAC	1 cut(s)	381
CviAII	CATG	2 cut(s)	83, 404
CviJI	RGCY	7 cut(s)	15, 80, 101, 215, 240, 287, 389
CviKI_1	RGCY	7 cut(s)	15, 80, 101, 215, 240, 287, 389
CviQI	GTAC	1 cut(s)	381
DdeI	CTNAG	1 cut(s)	216
DpnI	GATC	1 cut(s)	169
DpnII	GATC	1 cut(s)	167
Ecl136II	GAGCTC	1 cut(s)	80
Eco130I	CCWWGG	1 cut(s)	395
Eco24I	GRGCYC	1 cut(s)	82
Eco53kI	GAGCTC	1 cut(s)	80
EcoICRI	GAGCTC	1 cut(s)	80
EcoRII	CCWGG	2 cut(s)	15, 435
EcoT14I	CCWWGG	1 cut(s)	395
EcoT38I	GRGCYC	1 cut(s)	82
ErhI	CCWWGG	1 cut(s)	395
FaeI	CATG	2 cut(s)	86, 407
FaiI	YATR	3 cut(s)	84, 243, 405
FatI	CATG	2 cut(s)	82, 403
Fnu4HI	GCNGC	2 cut(s)	213, 344
FokI	GGATG	4 cut(s)	86, 129, 382, 425
FriOI	GRGCYC	1 cut(s)	82
Fsp4HI	GCNGC	2 cut(s)	213, 344
FspBI	CTAG	2 cut(s)	173, 396
GluI	GCNGC	2 cut(s)	213, 344
HaeIII	GGCC	1 cut(s)	15
HgaI	GACGC	1 cut(s)	177
Hin1I	GRCGYC	1 cut(s)	188
Hin1II	CATG	2 cut(s)	86, 407
HindIII	AAGCTT	1 cut(s)	99
HinfI	GANTC	3 cut(s)	147, 248, 350
HphI	GGTGA	2 cut(s)	384, 437
Hpy166II	GTNNAC	1 cut(s)	428
Hpy188I	TCNGA	3 cut(s)	167, 198, 219
Hpy188III	TCNNGA	1 cut(s)	173
Hpy8I	GTNNAC	1 cut(s)	428
HpyAV	CCTTC	4 cut(s)	47, 107, 226, 268
HpyCH4V	TGCA	1 cut(s)	271
HpyF3I	CTNAG	1 cut(s)	216
Hsp92I	GRCGYC	1 cut(s)	188
Hsp92II	CATG	2 cut(s)	86, 407
Kzo9I	GATC	1 cut(s)	167
LmnI	GCTCC	1 cut(s)	77
LpnPI	CCDG	5 cut(s)	2, 29, 50, 302, 422
Lsp1109I	GCAGC	1 cut(s)	224
LweI	GCATC	1 cut(s)	360
MaeI	CTAG	2 cut(s)	173, 396
MalI	GATC	1 cut(s)	169
MboI	GATC	1 cut(s)	167
MboII	GAAGA	2 cut(s)	62, 304
MflI	RGATCY	1 cut(s)	167
MhlI	GDGCHC	1 cut(s)	82
MluCI	AATT	6 cut(s)	20, 151, 192, 203, 280, 315
MlyI	GAGTC	2 cut(s)	156, 242
MnlI	CCTC	1 cut(s)	384
MroXI	GAANNNNTTC	1 cut(s)	299
MseI	TTAA	1 cut(s)	318
MslI	CAYNNNNRTG	2 cut(s)	397, 438
MspR9I	CCNGG	2 cut(s)	17, 437
Mva1269I	GAATGC	1 cut(s)	299
MvaI	CCWGG	2 cut(s)	17, 437
NdeII	GATC	1 cut(s)	167
NlaIII	CATG	2 cut(s)	86, 407
OliI	CACNNNNGTG	2 cut(s)	397, 438
PctI	GAATGC	1 cut(s)	299
PdmI	GAANNNNTTC	1 cut(s)	299
PfeI	GAWTC	1 cut(s)	350
PkrI	GCNGC	2 cut(s)	214, 345
PleI	GAGTC	2 cut(s)	155, 242
PpsI	GAGTC	2 cut(s)	155, 242
Psp124BI	GAGCTC	1 cut(s)	82
Psp6I	CCWGG	2 cut(s)	15, 435
PspGI	CCWGG	2 cut(s)	15, 435
PsuI	RGATCY	1 cut(s)	167
RsaI	GTAC	1 cut(s)	382
RsaNI	GTAC	1 cut(s)	381
RseI	CAYNNNNRTG	2 cut(s)	397, 438
SacI	GAGCTC	1 cut(s)	82
SaqAI	TTAA	1 cut(s)	318
SatI	GCNGC	2 cut(s)	213, 344
Sau3AI	GATC	1 cut(s)	167
SchI	GAGTC	2 cut(s)	156, 242
ScrFI	CCNGG	2 cut(s)	17, 437
SduI	GDGCHC	1 cut(s)	82
SetI	ASST	8 cut(s)	58, 82, 103, 217, 382, 397, 401, 438
SfaNI	GCATC	1 cut(s)	360
SmiMI	CAYNNNNRTG	2 cut(s)	397, 438
SmlI	CTYRAG	2 cut(s)	225, 375
SmoI	CTYRAG	2 cut(s)	225, 375
Sse9I	AATT	6 cut(s)	20, 151, 192, 203, 280, 315
SsiI	CCGC	2 cut(s)	255, 343
SspMI	CTAG	2 cut(s)	173, 396
SstI	GAGCTC	1 cut(s)	82
StyD4I	CCNGG	2 cut(s)	15, 435
StyI	CCWWGG	1 cut(s)	395
TasI	AATT	6 cut(s)	20, 151, 192, 203, 280, 315
TauI	GCSGC	1 cut(s)	346
TfiI	GAWTC	1 cut(s)	350
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TseI	GCWGC	1 cut(s)	212
TspDTI	ATGAA	2 cut(s)	215, 292
XbaI	TCTAGA	1 cut(s)	172
XmaJI	CCTAGG	1 cut(s)	395
XmnI	GAANNNNTTC	1 cut(s)	299
XspI	CTAG	2 cut(s)	173, 396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.