Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000252.1

Orthogroup ID

OG0018677

Physical Location & Seq

Genomic Coordinates Reverse (-)

224824 .. 226717

Gene Structure 1894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000252.1_g000037.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atggcttcttatctggattattggctggtgaaagcatttctcagactaggtttttgttatggggcaacctcatacagtttccacggcgccacactgagcaccaacgaagttgatgctaccagacaaaaccttggatggccatacgagcatttccacgtgccagagaatgttaaaagtcaccagtgtcaccatactgcagaagtttcagctcttgcagctgaatggaatgccaagtttgctgaatatgagaagaggtatgcagagaaagctgtagagctgaagtccatcatcactggtgagctacccgctggttgggaaaaggcactcctgatcagttctccgcaacattcgattattcatgagaatgttgatctgggattccgaaatcagttctctgcatatgcatttgatccctggcttcatattctgctcaacgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004802 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0016740 GO:0016744 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00030 ko00710 ko01051 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01051 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Transket_pyr Transketolase_C Transketolase_N

Protein Analysis

146

Amino Acids

16.67

Weight (kDa)

5.95

Isoelectric Point (pI)

28.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018677)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_ssc0000252.1_g000037
rosa_roxburghii	Rroxscaffold_2G00080210 Rroxscaffold_2G00080430
rosa_samantha	Rh2CG610700 Rh2CG611900 Rh2DG659000 Rh2DG659600 Rh2DG659900
rosa_wichuraiana	Rw2G052270 Rw2G052310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	86
AciI	CCGC	2 cut(s)	306, 341
AclI	AACGTT	1 cut(s)	435
AclWI	GGATC	1 cut(s)	404
AcoI	YGGCCR	1 cut(s)	137
AcuI	CTGAAG	1 cut(s)	299
AcvI	CACGTG	1 cut(s)	157
AcyI	GRCGYC	1 cut(s)	87
AfiI	CCNNNNNNNGG	1 cut(s)	312
AjnI	CCWGG	1 cut(s)	413
AluBI	AGCT	5 cut(s)	209, 218, 269, 277, 301
AluI	AGCT	5 cut(s)	209, 218, 269, 277, 301
Alw21I	GWGCWC	1 cut(s)	101
AlwI	GGATC	1 cut(s)	404
AoxI	GGCC	1 cut(s)	137
ApeKI	GCWGC	1 cut(s)	215
ArsI	GACNNNNNNTTYG	2 cut(s)	36, 68
AspLEI	GCGC	1 cut(s)	89
AsuHPI	GGTGA	4 cut(s)	40, 170, 179, 308
BalI	TGGCCA	1 cut(s)	139
BanI	GGYRCC	1 cut(s)	86
BbrPI	CACGTG	1 cut(s)	157
Bbv12I	GWGCWC	1 cut(s)	101
BbvI	GCAGC	1 cut(s)	227
BccI	CCATC	2 cut(s)	129, 293
BceAI	ACGGC	1 cut(s)	100
BcgI	CGANNNNNNTGC	2 cut(s)	95, 129
BciT130I	CCWGG	1 cut(s)	415
BclI	TGATCA	1 cut(s)	330
BfaI	CTAG	1 cut(s)	47
BfmI	CTRYAG	2 cut(s)	195, 270
BfoI	RGCGCY	1 cut(s)	90
BisI	GCNGC	1 cut(s)	216
BlsI	GCNGC	1 cut(s)	217
Bme1390I	CCNGG	1 cut(s)	415
BmiI	GGNNCC	1 cut(s)	88
BmrFI	CCNGG	1 cut(s)	415
BmsI	GCATC	1 cut(s)	103
BsaAI	YACGTR	1 cut(s)	157
BsaHI	GRCGYC	1 cut(s)	87
BsaJI	CCNNGG	3 cut(s)	82, 130, 413
Bsc4I	CCNNNNNNNGG	1 cut(s)	312
Bse1I	ACTGG	2 cut(s)	181, 298
BseBI	CCWGG	1 cut(s)	415
BseDI	CCNNGG	3 cut(s)	82, 130, 413
BseGI	GGATG	1 cut(s)	140
BseLI	CCNNNNNNNGG	1 cut(s)	312
BseMII	CTCAG	2 cut(s)	55, 86
BseNI	ACTGG	2 cut(s)	181, 298
BseXI	GCAGC	1 cut(s)	227
BshFI	GGCC	1 cut(s)	139
BshNI	GGYRCC	1 cut(s)	86
BsiHKAI	GWGCWC	1 cut(s)	101
BslI	CCNNNNNNNGG	1 cut(s)	312
BsmI	GAATGC	1 cut(s)	232
BsnI	GGCC	1 cut(s)	139
Bsp1286I	GDGCHC	1 cut(s)	101
Bsp143I	GATC	3 cut(s)	330, 370, 409
BspACI	CCGC	2 cut(s)	306, 341
BspANI	GGCC	1 cut(s)	139
BspCNI	CTCAG	2 cut(s)	54, 87
BspHI	TCATGA	1 cut(s)	358
BspLI	GGNNCC	1 cut(s)	88
BspMAI	CTGCAG	1 cut(s)	199
BspPI	GGATC	1 cut(s)	404
BspT107I	GGYRCC	1 cut(s)	86
BsrI	ACTGG	2 cut(s)	181, 298
BssECI	CCNNGG	3 cut(s)	82, 130, 413
BssMI	GATC	3 cut(s)	330, 370, 409
BssNI	GRCGYC	1 cut(s)	87
BssT1I	CCWWGG	1 cut(s)	130
Bst2UI	CCWGG	1 cut(s)	415
Bst4CI	ACNGT	1 cut(s)	77
Bst6I	CTCTTC	1 cut(s)	245
BstACI	GRCGYC	1 cut(s)	87
BstBAI	YACGTR	1 cut(s)	157
BstDEI	CTNAG	2 cut(s)	41, 95
BstDSI	CCRYGG	1 cut(s)	82
BstF5I	GGATG	1 cut(s)	140
BstH2I	RGCGCY	1 cut(s)	90
BstHHI	GCGC	1 cut(s)	89
BstKTI	GATC	3 cut(s)	333, 373, 412
BstMBI	GATC	3 cut(s)	330, 370, 409
BstMWI	GCNNNNNNNGC	4 cut(s)	145, 215, 236, 266
BstNI	CCWGG	1 cut(s)	415
BstSCI	CCNGG	1 cut(s)	413
BstSFI	CTRYAG	2 cut(s)	195, 270
BstV1I	GCAGC	1 cut(s)	227
BsuRI	GGCC	1 cut(s)	139
BtgI	CCRYGG	1 cut(s)	82
BtsCI	GGATG	1 cut(s)	140
BtsIMutI	CAGTG	3 cut(s)	92, 188, 291
CciI	TCATGA	1 cut(s)	358
CfoI	GCGC	1 cut(s)	89
CviAII	CATG	1 cut(s)	359
CviJI	RGCY	9 cut(s)	5, 25, 139, 209, 218, 269, 277, 301, 418
CviKI_1	RGCY	9 cut(s)	5, 25, 139, 209, 218, 269, 277, 301, 418
DdeI	CTNAG	2 cut(s)	41, 95
DinI	GGCGCC	1 cut(s)	88
DpnI	GATC	3 cut(s)	332, 372, 411
DpnII	GATC	3 cut(s)	330, 370, 409
EaeI	YGGCCR	1 cut(s)	137
Eam1104I	CTCTTC	1 cut(s)	245
EarI	CTCTTC	1 cut(s)	245
Eco130I	CCWWGG	1 cut(s)	130
Eco57I	CTGAAG	1 cut(s)	299
Eco72I	CACGTG	1 cut(s)	157
EcoRII	CCWGG	1 cut(s)	413
EcoT14I	CCWWGG	1 cut(s)	130
EcoT22I	ATGCAT	1 cut(s)	406
EgeI	GGCGCC	1 cut(s)	88
EheI	GGCGCC	1 cut(s)	88
ErhI	CCWWGG	1 cut(s)	130
FaeI	CATG	1 cut(s)	362
FatI	CATG	1 cut(s)	358
FauI	CCCGC	1 cut(s)	313
FauNDI	CATATG	1 cut(s)	400
FbaI	TGATCA	1 cut(s)	330
Fnu4HI	GCNGC	1 cut(s)	216
FokI	GGATG	1 cut(s)	147
Fsp4HI	GCNGC	1 cut(s)	216
FspBI	CTAG	1 cut(s)	47
GlaI	GCGC	1 cut(s)	88
GluI	GCNGC	1 cut(s)	216
HaeII	RGCGCY	1 cut(s)	90
HaeIII	GGCC	1 cut(s)	139
HhaI	GCGC	1 cut(s)	89
Hin1I	GRCGYC	1 cut(s)	87
Hin1II	CATG	1 cut(s)	362
Hin6I	GCGC	1 cut(s)	87
HinP1I	GCGC	1 cut(s)	87
HinfI	GANTC	1 cut(s)	378
HphI	GGTGA	4 cut(s)	40, 170, 179, 308
Hpy188I	TCNGA	2 cut(s)	44, 383
Hpy188III	TCNNGA	3 cut(s)	14, 328, 359
HpyCH4III	ACNGT	1 cut(s)	77
HpyCH4IV	ACGT	2 cut(s)	156, 435
HpyCH4V	TGCA	5 cut(s)	197, 215, 260, 398, 404
HpyF10VI	GCNNNNNNNGC	4 cut(s)	145, 215, 236, 266
HpyF3I	CTNAG	2 cut(s)	41, 95
HpySE526I	ACGT	2 cut(s)	156, 435
Hsp92I	GRCGYC	1 cut(s)	87
Hsp92II	CATG	1 cut(s)	362
HspAI	GCGC	1 cut(s)	87
KasI	GGCGCC	1 cut(s)	86
Ksp22I	TGATCA	1 cut(s)	330
Kzo9I	GATC	3 cut(s)	330, 370, 409
Lsp1109I	GCAGC	1 cut(s)	227
LweI	GCATC	1 cut(s)	103
MaeI	CTAG	1 cut(s)	47
MaeII	ACGT	2 cut(s)	156, 435
MaeIII	GTNAC	2 cut(s)	176, 185
MalI	GATC	3 cut(s)	332, 372, 411
MboI	GATC	3 cut(s)	330, 370, 409
MboII	GAAGA	1 cut(s)	262
MhlI	GDGCHC	1 cut(s)	101
MlsI	TGGCCA	1 cut(s)	139
MluNI	TGGCCA	1 cut(s)	139
Mly113I	GGCGCC	1 cut(s)	87
MnlI	CCTC	2 cut(s)	79, 246
Mox20I	TGGCCA	1 cut(s)	139
Mph1103I	ATGCAT	1 cut(s)	406
MscI	TGGCCA	1 cut(s)	139
MseI	TTAA	1 cut(s)	171
MslI	CAYNNNNRTG	1 cut(s)	363
Msp20I	TGGCCA	1 cut(s)	139
MspA1I	CMGCKG	2 cut(s)	218, 308
MspR9I	CCNGG	1 cut(s)	415
Mva1269I	GAATGC	1 cut(s)	232
MvaI	CCWGG	1 cut(s)	415
MwoI	GCNNNNNNNGC	4 cut(s)	145, 215, 236, 266
NarI	GGCGCC	1 cut(s)	87
NdeI	CATATG	1 cut(s)	400
NdeII	GATC	3 cut(s)	330, 370, 409
NlaIII	CATG	1 cut(s)	362
NlaIV	GGNNCC	1 cut(s)	88
NmuCI	GTSAC	2 cut(s)	176, 185
NsiI	ATGCAT	1 cut(s)	406
PagI	TCATGA	1 cut(s)	358
PctI	GAATGC	1 cut(s)	232
PfeI	GAWTC	1 cut(s)	378
PkrI	GCNGC	1 cut(s)	217
PluTI	GGCGCC	1 cut(s)	90
PmaCI	CACGTG	1 cut(s)	157
PmlI	CACGTG	1 cut(s)	157
Ppu21I	YACGTR	1 cut(s)	157
Psp1406I	AACGTT	1 cut(s)	435
Psp6I	CCWGG	1 cut(s)	413
PspCI	CACGTG	1 cut(s)	157
PspGI	CCWGG	1 cut(s)	413
PspN4I	GGNNCC	1 cut(s)	88
PstI	CTGCAG	1 cut(s)	199
PvuII	CAGCTG	1 cut(s)	218
RseI	CAYNNNNRTG	1 cut(s)	363
SaqAI	TTAA	1 cut(s)	171
SatI	GCNGC	1 cut(s)	216
Sau3AI	GATC	3 cut(s)	330, 370, 409
ScrFI	CCNGG	1 cut(s)	415
SduI	GDGCHC	1 cut(s)	101
SfaNI	GCATC	1 cut(s)	103
SfcI	CTRYAG	2 cut(s)	195, 270
SfoI	GGCGCC	1 cut(s)	88
SmiMI	CAYNNNNRTG	1 cut(s)	363
SsiI	CCGC	2 cut(s)	306, 341
SspDI	GGCGCC	1 cut(s)	86
SspMI	CTAG	1 cut(s)	47
StyD4I	CCNGG	1 cut(s)	413
StyI	CCWWGG	1 cut(s)	130
TaaI	ACNGT	1 cut(s)	77
TaiI	ACGT	2 cut(s)	159, 438
TaqI	TCGA	1 cut(s)	350
TfiI	GAWTC	1 cut(s)	378
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
TscAI	CASTG	3 cut(s)	99, 188, 298
TseFI	GTSAC	2 cut(s)	176, 185
TseI	GCWGC	1 cut(s)	215
Tsp45I	GTSAC	2 cut(s)	176, 185
TspDTI	ATGAA	2 cut(s)	347, 410
TspRI	CASTG	3 cut(s)	99, 188, 298
XspI	CTAG	1 cut(s)	47
Zsp2I	ATGCAT	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.