Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0018677

Physical Location & Seq

Genomic Coordinates Reverse (-)

80190982 .. 80192571

Gene Structure 1590 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G052270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGTCAAGGTTAGAATCTGTATTCTTGGAAGAATGCTTGGAAAAGGCCAGACGAATGACTTCAGGTTTTGAATCAGCAGAAGCCGAACCCAAAGAAGGGGAGGGTGATGAAAATAAGAAAAAATCAATTAAAGGTGGTAAGCAGGATGCTTTAATCAAAAGCGAAAAGGACAAGGCTGTTAGTGCAATAGCGAAAAGTGTACGGCCCGAGGCAACTACTTTTCCTACAGCACCACAAGTCAAACCAGAACATTTCCTACAGCACCCCAAGTCAACCCAGAACTTACTTTGCAGTAATGTAGTTTTTGAAATCCTCTTTCTGTGTTCTTTTTCTTCCTTTTGGCCTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0000228 GO:0000428 GO:0000785 GO:0000790 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005694 GO:0005856 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0015629 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030880 GO:0031248 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0033276 GO:0034641 GO:0034645 GO:0034654 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044798 GO:0046483 GO:0046983 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070461 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902493 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko05168 map03022 map05168

Pfam Domains

Protein Families

TFIID_NTD2 WD40

Protein Analysis

116

Amino Acids

13.0

Weight (kDa)

6.74

Isoelectric Point (pI)

51.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018677)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_ssc0000252.1_g000037
rosa_roxburghii	Rroxscaffold_2G00080210 Rroxscaffold_2G00080430
rosa_samantha	Rh2CG610700 Rh2CG611900 Rh2DG659000 Rh2DG659600 Rh2DG659900
rosa_wichuraiana	Rw2G052270 Rw2G052310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	45
AfaI	GTAC	1 cut(s)	201
AfiI	CCNNNNNNNGG	2 cut(s)	95, 96
AgsI	TTSAA	2 cut(s)	71, 308
Ama87I	CYCGRG	1 cut(s)	206
AoxI	GGCC	3 cut(s)	45, 203, 341
Asp700I	GAANNNNTTC	1 cut(s)	58
AspS9I	GGNCC	1 cut(s)	204
AsuHPI	GGTGA	1 cut(s)	116
AvaI	CYCGRG	1 cut(s)	206
BceAI	ACGGC	1 cut(s)	218
BfmI	CTRYAG	2 cut(s)	225, 257
BmeT110I	CYCGRG	1 cut(s)	206
BmgT120I	GGNCC	1 cut(s)	204
BmsI	GCATC	1 cut(s)	136
BsaJI	CCNNGG	1 cut(s)	207
Bsc4I	CCNNNNNNNGG	2 cut(s)	95, 96
BseDI	CCNNGG	1 cut(s)	207
BseGI	GGATG	1 cut(s)	151
BseLI	CCNNNNNNNGG	2 cut(s)	95, 96
BshFI	GGCC	3 cut(s)	47, 205, 343
BsiHKCI	CYCGRG	1 cut(s)	206
BslI	CCNNNNNNNGG	2 cut(s)	95, 96
BsmI	GAATGC	1 cut(s)	38
BsnI	GGCC	3 cut(s)	47, 205, 343
BsoBI	CYCGRG	1 cut(s)	206
BspANI	GGCC	3 cut(s)	47, 205, 343
BssECI	CCNNGG	1 cut(s)	207
BstF5I	GGATG	1 cut(s)	151
BstMWI	GCNNNNNNNGC	1 cut(s)	182
BstSFI	CTRYAG	2 cut(s)	225, 257
BsuRI	GGCC	3 cut(s)	47, 205, 343
BtsCI	GGATG	1 cut(s)	151
Cfr13I	GGNCC	1 cut(s)	204
Csp6I	GTAC	1 cut(s)	200
CviJI	RGCY	5 cut(s)	47, 83, 176, 205, 343
CviKI_1	RGCY	5 cut(s)	47, 83, 176, 205, 343
CviQI	GTAC	1 cut(s)	200
Eco57I	CTGAAG	1 cut(s)	45
Eco88I	CYCGRG	1 cut(s)	206
FokI	GGATG	1 cut(s)	158
HaeIII	GGCC	3 cut(s)	47, 205, 343
HincII	GTYRAC	1 cut(s)	273
HindII	GTYRAC	1 cut(s)	273
HinfI	GANTC	2 cut(s)	14, 71
HphI	GGTGA	1 cut(s)	116
Hpy166II	GTNNAC	2 cut(s)	200, 273
Hpy8I	GTNNAC	2 cut(s)	200, 273
HpyAV	CCTTC	1 cut(s)	89
HpyCH4V	TGCA	2 cut(s)	185, 291
HpyF10VI	GCNNNNNNNGC	1 cut(s)	182
LpnPI	CCDG	5 cut(s)	48, 61, 128, 258, 290
LweI	GCATC	1 cut(s)	136
MboII	GAAGA	2 cut(s)	41, 324
MluCI	AATT	1 cut(s)	126
MnlI	CCTC	3 cut(s)	94, 202, 323
MroXI	GAANNNNTTC	1 cut(s)	58
MseI	TTAA	2 cut(s)	129, 152
Mva1269I	GAATGC	1 cut(s)	38
MwoI	GCNNNNNNNGC	1 cut(s)	182
PctI	GAATGC	1 cut(s)	38
PdmI	GAANNNNTTC	1 cut(s)	58
PfeI	GAWTC	2 cut(s)	14, 71
PspPI	GGNCC	1 cut(s)	204
PsrI	GAACNNNNNNTAC	2 cut(s)	240, 272
RsaI	GTAC	1 cut(s)	201
RsaNI	GTAC	1 cut(s)	200
SaqAI	TTAA	2 cut(s)	129, 152
Sau96I	GGNCC	1 cut(s)	204
SetI	ASST	3 cut(s)	11, 67, 136
SfaNI	GCATC	1 cut(s)	136
SfcI	CTRYAG	2 cut(s)	225, 257
Sse9I	AATT	1 cut(s)	126
TasI	AATT	1 cut(s)	126
TfiI	GAWTC	2 cut(s)	14, 71
Tru1I	TTAA	2 cut(s)	129, 152
Tru9I	TTAA	2 cut(s)	129, 152
TspDTI	ATGAA	1 cut(s)	123
XmnI	GAANNNNTTC	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.