Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000311.1

Orthogroup ID

OG0011052

Physical Location & Seq

Genomic Coordinates Reverse (-)

70602 .. 77110

Gene Structure 6509 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000311.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1368 bp

atggtagtcaagaacaagaagcagaccgccaatgcagccgttgccaacagaaggcaaaccctaaggcgttgtcgatcggccaagcaaccagaactacaagacgtagaggacttgttcagcgaagaagagaccgagaaaatcagggaggctctgttgaaatggtacggcctcaaccgcagagacctgccttggagagaagaagaggaagacgtggaggtcagagtgtacagggtgtgggtctcggaagtcatgcttcagcagactagggttcagactgtgattcagtacttcaaccgttggatgagcaaatggcccaccattcacagcctggcccaggcttctcttgaggaggtgaatgaaatgtgggctggtttgggatactatcgaagagcacgatttcttttagagggagctaggaagattgttgcagaaggagatcagtttcctaaaacagtttctcatctactaaaaataccaggaatcggagactatacggctggagcgattgcctcaattgcattaaaagaggcagttccagtggtggatggaaatgtaataagggtgattgctagactaaaggctatttctgccaatccaaaagactctttgactgtcaagaaattttggaaactagcagcccaattagttgaccctttccagcctggggacttcaatcaggctctaatggagcttggtgcaactgtatgtacgccaacaagtccaagctgcgccacatgtcctgtatttggccaatgttgtgcattgtcaatatctaggcatgatagttcagtggtggttacagattatccagttaaggtggtaaagaccaaacaaagacatgatttctctgctgtatgtgttgtggaaatattgggagatgaggaatcatcaatcggacaccaaatcaacaataagtttcttctggtaaaaaggcctgatgaagggttgcttgctggcctctgggagttcccgtctgtctcattggctggagaagttggattggttcctaggagaaaggcaattgatcaatatttgaataagtatttcacacttaaccccagaaagacgtgtgacatagtttccagggaacatgtgggagaatatgtccatgttttctctcatattcgactcaagatgtatgtggaatcgttgattttacgtgttgaaggtgggatgaatgacctggttagcaagcgggacaacgaaattgtgccttggaaatgtgtggatgccgacattctttcaaacatgggattgacatctggtgtaagaaaggtatacactatggttcaaaagttaaagcaagaaaagtcgtcttctgatcctgtcttggacatcaagaagagaaaaaggccttcaatgaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000700 GO:0000701 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006979 GO:0008150 GO:0008152 GO:0009987 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0032404 GO:0032407 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044877 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03410 map03410

Pfam Domains

Protein Families

HhH-GPD NUDIX_4

Protein Analysis

455

Amino Acids

51.59

Weight (kDa)

9.14

Isoelectric Point (pI)

48.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12740 AT4G12740 AT4G12740
fragaria_vesca	FvH4_3g28500 FvH4_3g28500 FvH4_3g28500 FvH4_3g28500
malus_domestica	MD15G1141300.v1.1
prunus_persica	Prupe.6G214800_v2.0.a1
pyrus_communis	pycom15g12760
rosa_chinensis	RchiOBHm_Chr5g0052821
rosa_laevigata	RLG00000034790
rosa_multiflora	Rmu_ssc0000311.1_g000017
rosa_roxburghii	Rroxscaffold_1G00028640
rosa_rugosa	Rorug05G0269500
rosa_samantha	Rh5AG341500 Rh5BG352200 Rh5CG378900 Rh5DG368500
rosa_wichuraiana	Rw5G032200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	215
Acc36I	ACCTGC	1 cut(s)	192
AccI	GTMKAC	1 cut(s)	1278
AciI	CCGC	3 cut(s)	27, 175, 1195
AclWI	GGATC	1 cut(s)	1316
AcoI	YGGCCR	2 cut(s)	78, 748
AcsI	RAATTY	1 cut(s)	620
AcuI	CTGAAG	1 cut(s)	239
AfaI	GTAC	4 cut(s)	164, 227, 287, 709
AfiI	CCNNNNNNNGG	6 cut(s)	51, 334, 482, 664, 746, 941
AflIII	ACRYGT	4 cut(s)	734, 1067, 1090, 1159
AgsI	TTSAA	8 cut(s)	157, 292, 673, 1036, 1166, 1245, 1292, 1359
AjiI	CACGTC	2 cut(s)	211, 1068
AjnI	CCWGG	6 cut(s)	327, 333, 475, 661, 1082, 1182
AluBI	AGCT	3 cut(s)	413, 691, 726
AluI	AGCT	3 cut(s)	413, 691, 726
Alw21I	GWGCWC	1 cut(s)	394
Alw26I	GTCTC	5 cut(s)	122, 174, 244, 480, 982
AlwI	GGATC	1 cut(s)	1316
AoxI	GGCC	8 cut(s)	78, 166, 311, 330, 748, 932, 955, 1352
ApeKI	GCWGC	3 cut(s)	35, 635, 726
ApoI	RAATTY	1 cut(s)	620
AspA2I	CCTAGG	1 cut(s)	1007
AspLEI	GCGC	1 cut(s)	731
AspS9I	GGNCC	2 cut(s)	312, 331
AsuHPI	GGTGA	2 cut(s)	364, 574
AvrII	CCTAGG	1 cut(s)	1007
AxyI	CCTNAGG	1 cut(s)	62
BalI	TGGCCA	1 cut(s)	750
BbsI	GAAGAC	2 cut(s)	213, 1308
Bbv12I	GWGCWC	1 cut(s)	394
BbvI	GCAGC	3 cut(s)	47, 647, 713
BccI	CCATC	1 cut(s)	539
BceAI	ACGGC	3 cut(s)	23, 181, 510
BciT130I	CCWGG	6 cut(s)	329, 335, 477, 663, 1084, 1184
BciVI	GTATCC	1 cut(s)	371
BclI	TGATCA	1 cut(s)	1024
BcoDI	GTCTC	5 cut(s)	122, 174, 244, 480, 982
BfaI	CTAG	6 cut(s)	264, 414, 570, 632, 774, 1008
BfuAI	ACCTGC	1 cut(s)	192
BfuI	GTATCC	1 cut(s)	371
BisI	GCNGC	3 cut(s)	36, 636, 727
BlnI	CCTAGG	1 cut(s)	1007
BlsI	GCNGC	3 cut(s)	37, 637, 728
BmcAI	AGTACT	1 cut(s)	287
Bme1390I	CCNGG	6 cut(s)	329, 335, 477, 663, 1084, 1184
BmgBI	CACGTC	2 cut(s)	211, 1068
BmgT120I	GGNCC	2 cut(s)	312, 331
BmiI	GGNNCC	1 cut(s)	1005
BmrFI	CCNGG	6 cut(s)	329, 335, 477, 663, 1084, 1184
BmsI	GCATC	1 cut(s)	1219
BpiI	GAAGAC	2 cut(s)	213, 1308
BpmI	CTGGAG	2 cut(s)	519, 1008
BpuEI	CTTGAG	2 cut(s)	365, 1115
BsaAI	YACGTR	1 cut(s)	1160
BsaBI	GATNNNNATC	1 cut(s)	1258
BsaI	GGTCTC	3 cut(s)	122, 174, 244
BsaJI	CCNNGG	6 cut(s)	188, 333, 662, 1007, 1083, 1214
BsaXI	ACNNNNNCTCC	6 cut(s)	137, 167, 956, 986, 1089, 1119
Bsc4I	CCNNNNNNNGG	6 cut(s)	51, 334, 482, 664, 746, 941
Bse1I	ACTGG	2 cut(s)	536, 809
Bse21I	CCTNAGG	1 cut(s)	62
Bse8I	GATNNNNATC	1 cut(s)	1258
BseBI	CCWGG	6 cut(s)	329, 335, 477, 663, 1084, 1184
BseDI	CCNNGG	6 cut(s)	188, 333, 662, 1007, 1083, 1214
BseGI	GGATG	4 cut(s)	306, 550, 1179, 1234
BseJI	GATNNNNATC	1 cut(s)	1258
BseLI	CCNNNNNNNGG	6 cut(s)	51, 334, 482, 664, 746, 941
BseNI	ACTGG	2 cut(s)	536, 809
BseRI	GAGGAG	1 cut(s)	362
BseXI	GCAGC	3 cut(s)	47, 647, 713
Bsh1285I	CGRYCG	1 cut(s)	77
BshFI	GGCC	8 cut(s)	80, 168, 313, 332, 750, 934, 957, 1354
BsiEI	CGRYCG	1 cut(s)	77
BsiHKAI	GWGCWC	1 cut(s)	394
BslFI	GGGAC	2 cut(s)	680, 1211
BslI	CCNNNNNNNGG	6 cut(s)	51, 334, 482, 664, 746, 941
BsmAI	GTCTC	5 cut(s)	122, 174, 244, 480, 982
BsmFI	GGGAC	2 cut(s)	680, 1211
BsnI	GGCC	8 cut(s)	80, 168, 313, 332, 750, 934, 957, 1354
Bso31I	GGTCTC	3 cut(s)	122, 174, 244
Bsp1286I	GDGCHC	1 cut(s)	394
Bsp1407I	TGTACA	1 cut(s)	225
Bsp143I	GATC	4 cut(s)	74, 436, 1024, 1321
BspACI	CCGC	3 cut(s)	27, 175, 1195
BspANI	GGCC	8 cut(s)	80, 168, 313, 332, 750, 934, 957, 1354
BspLI	GGNNCC	1 cut(s)	1005
BspMI	ACCTGC	1 cut(s)	192
BspPI	GGATC	1 cut(s)	1316
BspQI	GCTCTTC	1 cut(s)	382
BspTNI	GGTCTC	3 cut(s)	122, 174, 244
BsrGI	TGTACA	1 cut(s)	225
BsrI	ACTGG	2 cut(s)	536, 809
BssECI	CCNNGG	6 cut(s)	188, 333, 662, 1007, 1083, 1214
BssMI	GATC	4 cut(s)	74, 436, 1024, 1321
BssNAI	GTATAC	1 cut(s)	1279
BssT1I	CCWWGG	3 cut(s)	188, 1007, 1214
Bst1107I	GTATAC	1 cut(s)	1279
Bst2UI	CCWGG	6 cut(s)	329, 335, 477, 663, 1084, 1184
Bst4CI	ACNGT	5 cut(s)	277, 296, 454, 613, 703
Bst6I	CTCTTC	4 cut(s)	120, 195, 382, 1337
BstAPI	GCANNNNNTGC	1 cut(s)	41
BstAUI	TGTACA	1 cut(s)	225
BstBAI	YACGTR	1 cut(s)	1160
BstC8I	GCNNGC	3 cut(s)	951, 955, 1193
BstDEI	CTNAG	1 cut(s)	62
BstENI	CCTNNNNNAGG	2 cut(s)	332, 939
BstF5I	GGATG	4 cut(s)	306, 550, 1179, 1234
BstHHI	GCGC	1 cut(s)	731
BstKTI	GATC	4 cut(s)	77, 439, 1027, 1324
BstMAI	GTCTC	5 cut(s)	122, 174, 244, 480, 982
BstMBI	GATC	4 cut(s)	74, 436, 1024, 1321
BstMCI	CGRYCG	1 cut(s)	77
BstMWI	GCNNNNNNNGC	5 cut(s)	35, 41, 174, 515, 587
BstNI	CCWGG	6 cut(s)	329, 335, 477, 663, 1084, 1184
BstNSI	RCATGY	2 cut(s)	738, 1094
BstSCI	CCNGG	6 cut(s)	327, 333, 475, 661, 1082, 1182
BstV1I	GCAGC	3 cut(s)	47, 647, 713
BstV2I	GAAGAC	2 cut(s)	213, 1308
BstZ17I	GTATAC	1 cut(s)	1279
Bsu36I	CCTNAGG	1 cut(s)	62
BsuI	GTATCC	1 cut(s)	371
BsuRI	GGCC	8 cut(s)	80, 168, 313, 332, 750, 934, 957, 1354
BtrI	CACGTC	2 cut(s)	211, 1068
BtsCI	GGATG	4 cut(s)	306, 550, 1179, 1234
BtsIMutI	CAGTG	2 cut(s)	543, 795
BveI	ACCTGC	1 cut(s)	192
Cac8I	GCNNGC	3 cut(s)	951, 955, 1193
CfoI	GCGC	1 cut(s)	731
Cfr13I	GGNCC	2 cut(s)	312, 331
CsiI	ACCWGGT	1 cut(s)	1182
Csp6I	GTAC	4 cut(s)	163, 226, 286, 708
CviAII	CATG	7 cut(s)	250, 735, 779, 839, 1091, 1109, 1249
CviQI	GTAC	4 cut(s)	163, 226, 286, 708
DdeI	CTNAG	1 cut(s)	62
DpnI	GATC	4 cut(s)	76, 438, 1026, 1323
DpnII	GATC	4 cut(s)	74, 436, 1024, 1321
DrdI	GACNNNNNNGTC	1 cut(s)	215
DseDI	GACNNNNNNGTC	1 cut(s)	215
EaeI	YGGCCR	2 cut(s)	78, 748
Eam1104I	CTCTTC	4 cut(s)	120, 195, 382, 1337
EarI	CTCTTC	4 cut(s)	120, 195, 382, 1337
Eco130I	CCWWGG	3 cut(s)	188, 1007, 1214
Eco147I	AGGCCT	2 cut(s)	934, 1354
Eco31I	GGTCTC	3 cut(s)	122, 174, 244
Eco57I	CTGAAG	1 cut(s)	239
Eco81I	CCTNAGG	1 cut(s)	62
EcoNI	CCTNNNNNAGG	2 cut(s)	332, 939
EcoRII	CCWGG	6 cut(s)	327, 333, 475, 661, 1082, 1182
EcoT14I	CCWWGG	3 cut(s)	188, 1007, 1214
ErhI	CCWWGG	3 cut(s)	188, 1007, 1214
FaeI	CATG	7 cut(s)	253, 738, 782, 842, 1094, 1112, 1252
FalI	AAGNNNNNCTT	4 cut(s)	237, 269, 933, 965
FaqI	GGGAC	2 cut(s)	680, 1211
FatI	CATG	7 cut(s)	249, 734, 778, 838, 1090, 1108, 1248
FauI	CCCGC	1 cut(s)	1188
FbaI	TGATCA	1 cut(s)	1024
FblI	GTMKAC	1 cut(s)	1278
Fnu4HI	GCNGC	3 cut(s)	36, 636, 727
FokI	GGATG	4 cut(s)	313, 557, 1186, 1241
Fsp4HI	GCNGC	3 cut(s)	36, 636, 727
FspBI	CTAG	6 cut(s)	264, 414, 570, 632, 774, 1008
GlaI	GCGC	1 cut(s)	730
GluI	GCNGC	3 cut(s)	36, 636, 727
GsuI	CTGGAG	2 cut(s)	519, 1008
HaeIII	GGCC	8 cut(s)	80, 168, 313, 332, 750, 934, 957, 1354
HhaI	GCGC	1 cut(s)	731
Hin1II	CATG	7 cut(s)	253, 738, 782, 842, 1094, 1112, 1252
Hin6I	GCGC	1 cut(s)	729
HinP1I	GCGC	1 cut(s)	729
HincII	GTYRAC	1 cut(s)	649
HindII	GTYRAC	1 cut(s)	649
HinfI	GANTC	6 cut(s)	280, 480, 602, 884, 1128, 1145
HphI	GGTGA	2 cut(s)	364, 574
Hpy166II	GTNNAC	3 cut(s)	226, 649, 1279
Hpy188I	TCNGA	6 cut(s)	221, 244, 273, 485, 896, 1321
Hpy188III	TCNNGA	5 cut(s)	10, 344, 616, 1132, 1339
Hpy8I	GTNNAC	3 cut(s)	226, 649, 1279
HpyAV	CCTTC	5 cut(s)	45, 425, 935, 1160, 1365
HpyCH4III	ACNGT	5 cut(s)	277, 296, 454, 613, 703
HpyCH4IV	ACGT	4 cut(s)	102, 210, 1067, 1159
HpyCH4V	TGCA	5 cut(s)	35, 428, 518, 698, 761
HpyF10VI	GCNNNNNNNGC	5 cut(s)	35, 41, 174, 515, 587
HpyF3I	CTNAG	1 cut(s)	62
HpySE526I	ACGT	4 cut(s)	102, 210, 1067, 1159
Hsp92II	CATG	7 cut(s)	253, 738, 782, 842, 1094, 1112, 1252
HspAI	GCGC	1 cut(s)	729
Ksp22I	TGATCA	1 cut(s)	1024
Kzo9I	GATC	4 cut(s)	74, 436, 1024, 1321
LguI	GCTCTTC	1 cut(s)	382
LmnI	GCTCC	3 cut(s)	410, 500, 688
Lsp1109I	GCAGC	3 cut(s)	47, 647, 713
LweI	GCATC	1 cut(s)	1219
MabI	ACCWGGT	1 cut(s)	1182
MaeI	CTAG	6 cut(s)	264, 414, 570, 632, 774, 1008
MaeII	ACGT	4 cut(s)	102, 210, 1067, 1159
MaeIII	GTNAC	2 cut(s)	796, 1070
MalI	GATC	4 cut(s)	76, 438, 1026, 1323
MboI	GATC	4 cut(s)	74, 436, 1024, 1321
MfeI	CAATTG	2 cut(s)	513, 1020
MhlI	GDGCHC	1 cut(s)	394
MlsI	TGGCCA	1 cut(s)	750
MluCI	AATT	5 cut(s)	513, 620, 641, 1020, 1206
MluNI	TGGCCA	1 cut(s)	750
MlyI	GAGTC	2 cut(s)	596, 1122
MmeI	TCCRAC	2 cut(s)	278, 976
Mox20I	TGGCCA	1 cut(s)	750
MscI	TGGCCA	1 cut(s)	750
MseI	TTAA	4 cut(s)	521, 813, 1053, 1298
Msp20I	TGGCCA	1 cut(s)	750
MspR9I	CCNGG	6 cut(s)	329, 335, 477, 663, 1084, 1184
MunI	CAATTG	2 cut(s)	513, 1020
MvaI	CCWGG	6 cut(s)	329, 335, 477, 663, 1084, 1184
MwoI	GCNNNNNNNGC	5 cut(s)	35, 41, 174, 515, 587
NdeII	GATC	4 cut(s)	74, 436, 1024, 1321
NlaIII	CATG	7 cut(s)	253, 738, 782, 842, 1094, 1112, 1252
NlaIV	GGNNCC	1 cut(s)	1005
NmuCI	GTSAC	1 cut(s)	1070
NspI	RCATGY	2 cut(s)	738, 1094
PceI	AGGCCT	2 cut(s)	934, 1354
PciI	ACATGT	2 cut(s)	734, 1090
PciSI	GCTCTTC	1 cut(s)	382
PcsI	WCGNNNNNNNCGW	2 cut(s)	391, 500
PfeI	GAWTC	4 cut(s)	280, 480, 884, 1145
PkrI	GCNGC	3 cut(s)	37, 637, 728
Ple19I	CGATCG	1 cut(s)	77
PleI	GAGTC	2 cut(s)	596, 1122
PpsI	GAGTC	2 cut(s)	596, 1122
Ppu21I	YACGTR	1 cut(s)	1160
PscI	ACATGT	2 cut(s)	734, 1090
Psp6I	CCWGG	6 cut(s)	327, 333, 475, 661, 1082, 1182
PspGI	CCWGG	6 cut(s)	327, 333, 475, 661, 1082, 1182
PspN4I	GGNNCC	1 cut(s)	1005
PspPI	GGNCC	2 cut(s)	312, 331
PvuI	CGATCG	1 cut(s)	77
RsaI	GTAC	4 cut(s)	164, 227, 287, 709
RsaNI	GTAC	4 cut(s)	163, 226, 286, 708
SapI	GCTCTTC	1 cut(s)	382
SaqAI	TTAA	4 cut(s)	521, 813, 1053, 1298
SatI	GCNGC	3 cut(s)	36, 636, 727
Sau3AI	GATC	4 cut(s)	74, 436, 1024, 1321
Sau96I	GGNCC	2 cut(s)	312, 331
ScaI	AGTACT	1 cut(s)	287
SchI	GAGTC	2 cut(s)	596, 1122
ScrFI	CCNGG	6 cut(s)	329, 335, 477, 663, 1084, 1184
SduI	GDGCHC	1 cut(s)	394
SexAI	ACCWGGT	1 cut(s)	1182
SfaNI	GCATC	1 cut(s)	1219
SmlI	CTYRAG	2 cut(s)	344, 1130
SmoI	CTYRAG	2 cut(s)	344, 1130
Sse9I	AATT	5 cut(s)	513, 620, 641, 1020, 1206
SseBI	AGGCCT	2 cut(s)	934, 1354
SsiI	CCGC	3 cut(s)	27, 175, 1195
SspI	AATATT	2 cut(s)	870, 1031
SspMI	CTAG	6 cut(s)	264, 414, 570, 632, 774, 1008
StuI	AGGCCT	2 cut(s)	934, 1354
StyD4I	CCNGG	6 cut(s)	327, 333, 475, 661, 1082, 1182
StyI	CCWWGG	3 cut(s)	188, 1007, 1214
TaaI	ACNGT	5 cut(s)	277, 296, 454, 613, 703
TaiI	ACGT	4 cut(s)	105, 213, 1070, 1162
TaqI	TCGA	3 cut(s)	73, 385, 1126
TaqII	GACCGA	1 cut(s)	146
TasI	AATT	5 cut(s)	513, 620, 641, 1020, 1206
TatI	WGTACW	2 cut(s)	225, 285
TfiI	GAWTC	4 cut(s)	280, 480, 884, 1145
Tru1I	TTAA	4 cut(s)	521, 813, 1053, 1298
Tru9I	TTAA	4 cut(s)	521, 813, 1053, 1298
TscAI	CASTG	2 cut(s)	543, 795
TseFI	GTSAC	1 cut(s)	1070
TseI	GCWGC	3 cut(s)	35, 635, 726
Tsp45I	GTSAC	1 cut(s)	1070
TspDTI	ATGAA	3 cut(s)	372, 954, 1190
TspRI	CASTG	2 cut(s)	543, 795
XagI	CCTNNNNNAGG	2 cut(s)	332, 939
XapI	RAATTY	1 cut(s)	620
XceI	RCATGY	2 cut(s)	738, 1094
XcmI	CCANNNNNNNNNTGG	2 cut(s)	325, 1090
XmaJI	CCTAGG	1 cut(s)	1007
XmiI	GTMKAC	1 cut(s)	1278
XspI	CTAG	6 cut(s)	264, 414, 570, 632, 774, 1008
ZrmI	AGTACT	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.