Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0011052

Physical Location & Seq

Genomic Coordinates Forward (+)

30415623 .. 30417056

Gene Structure 1434 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0269500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1434 bp

ATGTTTCCCAACAACAAAGTTTGTGATGTCTCAATAGACATACCGCCACAAGGAGACTCCGAATGCTTTGATGATGATGGACGACCCAGAAGAAGTGGAACGCTTTGGACTGCAAGTGCTCACATAACAACGGCAGTAATTGGCTCTGGGGTTCTGTCCTTGGCTTGGGCAATAGCTCAGCTTGGATGGATTGCTGGCCCAGTTGCATTGCTCTTGTTCTCTTGGGTGACTTACTACACTTCAACTCTGCTCTCCGATTGCTATCGCAACAGTGATCCTGACACCGGAAAAAGGAACTACACATACATGGATGCTGTAAAATCCAACCTAGGTGGTGCTAAGGTCAAGATTTGTGGAGTTGTTCAGTACTTGAACCTAGTCGGAAGTGCCATTGGATACACTATAGCAGCATCTATAAGCATGATGGCAATAAAGAGATCAAACTGCTTCCACAAGAGTGGCGGGAAAGATCCATGCCATATCAACAGCAACCCGTACATGATTGCTTTCGGCATCATGCAAATCGTATTGTCGCAGATTCCAAACTTCGACCAGTTGTGCTGGCTCTCCATTGTTGCGGCGGTTATGTCATTCACTTACTCCACAATTGGACTAGGACTTGGAATTGCCAAAGTTGCAGAAACCGGAACCATCATGGGAAGTATGACTGGAATAAGCATTGGAAGTGTGACTGAAACCCAAAAGATGTGGAGGAGATTCCAAGCACTTGGTAACATAGCTTTTGCCTACTCGTTCTCTCTTATTTTGTTGGAAATTCAGGACACAATTAGATCACCACCATCTGAAGCCAAGACAATGAAGAAGGCCACAATAATTAGCGTTGCAGTTTCAACCGTTTTCTACATGCTATGTGGCTGCATGGGCTACGCTGCTTTTGGAGACTTAGCCCCTGGGAACTTGCTCACTGGTTTTGGCTTCTACAACCCTTATTGGCTCCTAGACATTGCCAACGTTGCCATAGTAGTCCACCTTGTTGGCGGGTACCAAGTCTTTTGCCAACCCTTTTTTGCCTTTGTTGAGAAAGCAGCAGCCGAAAAGTACCCGGACAGTAATTTCATTACAAGAGAAATCAGAGTAAGTGTCCCCTGTTTCTGCCACTGCAACATTAACCTCTTCAGATCAGTGTGGAGGACTGCCTTTGTGATTGTGGCCACTCTAATATCTATGCTCCTCCCGTTCTTTAACGATGTCGTTGGACTTCTCGGTGCTTTGGGATTCTGGCCTCTCACAATTTACTTCCCAATAGAGATGTACATTGAGCAGAAGAGGATACGAAAGTGGAGCAAAAGGTGGATTTGCCTCCAGATCCTAAGTGTTGTTTGTCTCATAATAACCATATCATCTGCTGCTGGCTCCATTGCTGGTGTGATTCTTGATCTCAAATCCTTCAAGCCATTCAAGACCAGTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000700 GO:0000701 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006979 GO:0008150 GO:0008152 GO:0009987 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0032404 GO:0032407 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044877 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03410 map03410

Pfam Domains

Protein Families

HhH-GPD NUDIX_4

Protein Analysis

477

Amino Acids

52.37

Weight (kDa)

8.79

Isoelectric Point (pI)

42.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	32 - 464	1.4e-119	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12740 AT4G12740 AT4G12740
fragaria_vesca	FvH4_3g28500 FvH4_3g28500 FvH4_3g28500 FvH4_3g28500
malus_domestica	MD15G1141300.v1.1
prunus_persica	Prupe.6G214800_v2.0.a1
pyrus_communis	pycom15g12760
rosa_chinensis	RchiOBHm_Chr5g0052821
rosa_laevigata	RLG00000034790
rosa_multiflora	Rmu_ssc0000311.1_g000017
rosa_roxburghii	Rroxscaffold_1G00028640
rosa_rugosa	Rorug05G0269500
rosa_samantha	Rh5AG341500 Rh5BG352200 Rh5CG378900 Rh5DG368500
rosa_wichuraiana	Rw5G032200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1002
AccB1I	GGYRCC	1 cut(s)	1002
AciI	CCGC	5 cut(s)	44, 462, 578, 581, 999
AclI	AACGTT	1 cut(s)	972
AclWI	GGATC	3 cut(s)	269, 464, 1321
AcoI	YGGCCR	1 cut(s)	1170
AcsI	RAATTY	1 cut(s)	774
AcuI	CTGAAG	2 cut(s)	825, 1120
AfaI	GTAC	5 cut(s)	368, 497, 1004, 1061, 1274
AfiI	CCNNNNNNNGG	4 cut(s)	50, 165, 284, 291
AgsI	TTSAA	5 cut(s)	243, 373, 852, 1411, 1420
AjnI	CCWGG	1 cut(s)	910
AleI	CACNNNNGTG	1 cut(s)	456
AluBI	AGCT	3 cut(s)	176, 181, 740
AluI	AGCT	3 cut(s)	176, 181, 740
Alw21I	GWGCWC	1 cut(s)	121
Alw26I	GTCTC	4 cut(s)	34, 48, 894, 1349
AlwI	GGATC	3 cut(s)	269, 464, 1321
AoxI	GGCC	4 cut(s)	196, 825, 1170, 1241
ApeKI	GCWGC	6 cut(s)	407, 876, 890, 1046, 1049, 1367
ApoI	RAATTY	1 cut(s)	774
Asp718I	GGTACC	1 cut(s)	1002
AspA2I	CCTAGG	1 cut(s)	328
AspS9I	GGNCC	1 cut(s)	197
AsuC2I	CCSGG	1 cut(s)	1064
AsuHPI	GGTGA	2 cut(s)	238, 786
AvrII	CCTAGG	1 cut(s)	328
BaeI	ACNNNNGTAYC	2 cut(s)	1283, 1316
BalI	TGGCCA	1 cut(s)	1172
BanI	GGYRCC	1 cut(s)	1002
Bbv12I	GWGCWC	1 cut(s)	121
BbvI	GCAGC	6 cut(s)	419, 863, 877, 1058, 1061, 1354
BccI	CCATC	5 cut(s)	71, 180, 418, 659, 808
BceAI	ACGGC	1 cut(s)	147
BciT130I	CCWGG	1 cut(s)	912
BciVI	GTATCC	2 cut(s)	389, 1284
BcnI	CCSGG	1 cut(s)	1064
BcoDI	GTCTC	4 cut(s)	34, 48, 894, 1349
BfaI	CTAG	5 cut(s)	329, 377, 614, 959, 1432
BfmI	CTRYAG	1 cut(s)	402
BfuI	GTATCC	2 cut(s)	389, 1284
BisI	GCNGC	7 cut(s)	408, 579, 877, 891, 1047, 1050, 1368
BlnI	CCTAGG	1 cut(s)	328
BlpI	GCTNAGC	1 cut(s)	177
BlsI	GCNGC	7 cut(s)	409, 580, 878, 892, 1048, 1051, 1369
BmcAI	AGTACT	1 cut(s)	368
Bme1390I	CCNGG	2 cut(s)	912, 1064
BmgT120I	GGNCC	1 cut(s)	197
BmiI	GGNNCC	4 cut(s)	649, 956, 1004, 1375
BmrFI	CCNGG	2 cut(s)	912, 1064
BmrI	ACTGGG	1 cut(s)	194
BmsI	GCATC	3 cut(s)	301, 419, 522
BmuI	ACTGGG	1 cut(s)	194
BpmI	CTGGAG	1 cut(s)	1307
Bpu10I	CCTNAGC	1 cut(s)	339
Bpu1102I	GCTNAGC	1 cut(s)	177
BpuMI	CCSGG	1 cut(s)	1064
BsaBI	GATNNNNATC	1 cut(s)	261
BsaJI	CCNNGG	4 cut(s)	159, 328, 910, 911
BsaWI	WCCGGW	2 cut(s)	284, 644
Bsc4I	CCNNNNNNNGG	4 cut(s)	50, 165, 284, 291
Bse1I	ACTGG	5 cut(s)	200, 553, 673, 931, 1425
Bse3DI	GCAATG	3 cut(s)	206, 963, 1377
Bse8I	GATNNNNATC	1 cut(s)	261
BseBI	CCWGG	1 cut(s)	912
BseDI	CCNNGG	4 cut(s)	159, 328, 910, 911
BseGI	GGATG	2 cut(s)	191, 316
BseJI	GATNNNNATC	1 cut(s)	261
BseLI	CCNNNNNNNGG	4 cut(s)	50, 165, 284, 291
BseMI	GCAATG	3 cut(s)	206, 963, 1377
BseMII	CTCAG	1 cut(s)	191
BseNI	ACTGG	5 cut(s)	200, 553, 673, 931, 1425
BseRI	GAGGAG	2 cut(s)	727, 1181
BseXI	GCAGC	6 cut(s)	419, 863, 877, 1058, 1061, 1354
BshFI	GGCC	4 cut(s)	198, 827, 1172, 1243
BshNI	GGYRCC	1 cut(s)	1002
BsiHKAI	GWGCWC	1 cut(s)	121
BsiSI	CCGG	3 cut(s)	285, 645, 1064
BslFI	GGGAC	1 cut(s)	1088
BslI	CCNNNNNNNGG	4 cut(s)	50, 165, 284, 291
BsmAI	GTCTC	4 cut(s)	34, 48, 894, 1349
BsmFI	GGGAC	1 cut(s)	1088
BsmI	GAATGC	1 cut(s)	68
BsnI	GGCC	4 cut(s)	198, 827, 1172, 1243
Bsp1286I	GDGCHC	1 cut(s)	121
Bsp1407I	TGTACA	1 cut(s)	1272
Bsp143I	GATC	7 cut(s)	274, 437, 469, 791, 1139, 1326, 1396
Bsp1720I	GCTNAGC	1 cut(s)	177
BspACI	CCGC	5 cut(s)	44, 462, 578, 581, 999
BspANI	GGCC	4 cut(s)	198, 827, 1172, 1243
BspCNI	CTCAG	1 cut(s)	190
BspLI	GGNNCC	4 cut(s)	649, 956, 1004, 1375
BspPI	GGATC	3 cut(s)	269, 464, 1321
BspT107I	GGYRCC	1 cut(s)	1002
BsrDI	GCAATG	3 cut(s)	206, 963, 1377
BsrGI	TGTACA	1 cut(s)	1272
BsrI	ACTGG	5 cut(s)	200, 553, 673, 931, 1425
BssECI	CCNNGG	4 cut(s)	159, 328, 910, 911
BssMI	GATC	7 cut(s)	274, 437, 469, 791, 1139, 1326, 1396
BssT1I	CCWWGG	2 cut(s)	159, 328
Bst2UI	CCWGG	1 cut(s)	912
Bst4CI	ACNGT	3 cut(s)	272, 856, 1070
Bst6I	CTCTTC	2 cut(s)	1139, 1280
BstAUI	TGTACA	1 cut(s)	1272
BstC8I	GCNNGC	3 cut(s)	196, 563, 1372
BstDEI	CTNAG	4 cut(s)	177, 339, 904, 1331
BstF5I	GGATG	2 cut(s)	191, 316
BstKTI	GATC	7 cut(s)	277, 440, 472, 794, 1142, 1329, 1399
BstMAI	GTCTC	4 cut(s)	34, 48, 894, 1349
BstMBI	GATC	7 cut(s)	274, 437, 469, 791, 1139, 1326, 1396
BstMWI	GCNNNNNNNGC	3 cut(s)	635, 882, 974
BstNI	CCWGG	1 cut(s)	912
BstNSI	RCATGY	1 cut(s)	868
BstSCI	CCNGG	2 cut(s)	910, 1062
BstSFI	CTRYAG	1 cut(s)	402
BstV1I	GCAGC	6 cut(s)	419, 863, 877, 1058, 1061, 1354
BstX2I	RGATCY	2 cut(s)	469, 1326
BstXI	CCANNNNNNTGG	3 cut(s)	458, 728, 995
BstYI	RGATCY	2 cut(s)	469, 1326
BsuI	GTATCC	2 cut(s)	389, 1284
BsuRI	GGCC	4 cut(s)	198, 827, 1172, 1243
BtsCI	GGATG	2 cut(s)	191, 316
BtsI	GCAGTG	1 cut(s)	1117
BtsIMutI	CAGTG	4 cut(s)	277, 924, 1117, 1149
Cac8I	GCNNGC	3 cut(s)	196, 563, 1372
Cfr13I	GGNCC	1 cut(s)	197
Csp6I	GTAC	5 cut(s)	367, 496, 1003, 1060, 1273
CspCI	CAANNNNNGTGG	6 cut(s)	313, 334, 348, 369, 689, 724
CviAII	CATG	8 cut(s)	307, 421, 474, 499, 517, 655, 865, 880
CviQI	GTAC	5 cut(s)	367, 496, 1003, 1060, 1273
DdeI	CTNAG	4 cut(s)	177, 339, 904, 1331
DpnI	GATC	7 cut(s)	276, 439, 471, 793, 1141, 1328, 1398
DpnII	GATC	7 cut(s)	274, 437, 469, 791, 1139, 1326, 1396
EaeI	YGGCCR	1 cut(s)	1170
Eam1104I	CTCTTC	2 cut(s)	1139, 1280
EarI	CTCTTC	2 cut(s)	1139, 1280
Eco130I	CCWWGG	2 cut(s)	159, 328
Eco57I	CTGAAG	2 cut(s)	825, 1120
EcoRII	CCWGG	1 cut(s)	910
EcoT14I	CCWWGG	2 cut(s)	159, 328
ErhI	CCWWGG	2 cut(s)	159, 328
FaeI	CATG	8 cut(s)	310, 424, 477, 502, 520, 658, 868, 883
FaqI	GGGAC	1 cut(s)	1088
FatI	CATG	8 cut(s)	306, 420, 473, 498, 516, 654, 864, 879
FauI	CCCGC	2 cut(s)	455, 992
Fnu4HI	GCNGC	7 cut(s)	408, 579, 877, 891, 1047, 1050, 1368
FokI	GGATG	2 cut(s)	198, 323
Fsp4HI	GCNGC	7 cut(s)	408, 579, 877, 891, 1047, 1050, 1368
FspBI	CTAG	5 cut(s)	329, 377, 614, 959, 1432
GluI	GCNGC	7 cut(s)	408, 579, 877, 891, 1047, 1050, 1368
GsuI	CTGGAG	1 cut(s)	1307
HaeIII	GGCC	4 cut(s)	198, 827, 1172, 1243
HapII	CCGG	3 cut(s)	285, 645, 1064
Hin1II	CATG	8 cut(s)	310, 424, 477, 502, 520, 658, 868, 883
HinfI	GANTC	5 cut(s)	56, 538, 717, 1236, 1390
HpaII	CCGG	3 cut(s)	285, 645, 1064
HphI	GGTGA	2 cut(s)	238, 786
Hpy166II	GTNNAC	1 cut(s)	988
Hpy188I	TCNGA	6 cut(s)	61, 256, 383, 805, 1094, 1139
Hpy188III	TCNNGA	6 cut(s)	278, 346, 779, 1324, 1394, 1420
Hpy8I	GTNNAC	1 cut(s)	988
HpyAV	CCTTC	2 cut(s)	817, 1417
HpyCH4III	ACNGT	3 cut(s)	272, 856, 1070
HpyCH4IV	ACGT	1 cut(s)	972
HpyCH4V	TGCA	7 cut(s)	113, 206, 520, 638, 845, 879, 1122
HpyF10VI	GCNNNNNNNGC	3 cut(s)	635, 882, 974
HpyF3I	CTNAG	4 cut(s)	177, 339, 904, 1331
HpySE526I	ACGT	1 cut(s)	972
Hsp92II	CATG	8 cut(s)	310, 424, 477, 502, 520, 658, 868, 883
KpnI	GGTACC	1 cut(s)	1006
Kzo9I	GATC	7 cut(s)	274, 437, 469, 791, 1139, 1326, 1396
LmnI	GCTCC	4 cut(s)	960, 1194, 1302, 1379
Lsp1109I	GCAGC	6 cut(s)	419, 863, 877, 1058, 1061, 1354
LweI	GCATC	3 cut(s)	301, 419, 522
MaeI	CTAG	5 cut(s)	329, 377, 614, 959, 1432
MaeII	ACGT	1 cut(s)	972
MaeIII	GTNAC	4 cut(s)	226, 688, 731, 1427
MalI	GATC	7 cut(s)	276, 439, 471, 793, 1141, 1328, 1398
MboI	GATC	7 cut(s)	274, 437, 469, 791, 1139, 1326, 1396
MboII	GAAGA	4 cut(s)	102, 832, 1126, 1297
MfeI	CAATTG	1 cut(s)	606
MflI	RGATCY	2 cut(s)	469, 1326
MhlI	GDGCHC	1 cut(s)	121
MlsI	TGGCCA	1 cut(s)	1172
MluCI	AATT	8 cut(s)	138, 606, 624, 774, 786, 834, 1072, 1251
MluNI	TGGCCA	1 cut(s)	1172
MlyI	GAGTC	1 cut(s)	50
MmeI	TCCRAC	4 cut(s)	348, 361, 750, 1195
MnlI	CCTC	7 cut(s)	705, 1142, 1143, 1202, 1254, 1281, 1331
Mox20I	TGGCCA	1 cut(s)	1172
MscI	TGGCCA	1 cut(s)	1172
MseI	TTAA	2 cut(s)	1128, 1203
MslI	CAYNNNNRTG	2 cut(s)	305, 456
Msp20I	TGGCCA	1 cut(s)	1172
MspI	CCGG	3 cut(s)	285, 645, 1064
MspR9I	CCNGG	2 cut(s)	912, 1064
MunI	CAATTG	1 cut(s)	606
Mva1269I	GAATGC	1 cut(s)	68
MvaI	CCWGG	1 cut(s)	912
MwoI	GCNNNNNNNGC	3 cut(s)	635, 882, 974
NciI	CCSGG	1 cut(s)	1064
NdeII	GATC	7 cut(s)	274, 437, 469, 791, 1139, 1326, 1396
NlaIII	CATG	8 cut(s)	310, 424, 477, 502, 520, 658, 868, 883
NlaIV	GGNNCC	4 cut(s)	649, 956, 1004, 1375
NmuCI	GTSAC	2 cut(s)	226, 688
NspI	RCATGY	1 cut(s)	868
OliI	CACNNNNGTG	1 cut(s)	456
PasI	CCCWGGG	1 cut(s)	911
PctI	GAATGC	1 cut(s)	68
PfeI	GAWTC	4 cut(s)	538, 717, 1236, 1390
PkrI	GCNGC	7 cut(s)	409, 580, 878, 892, 1048, 1051, 1369
PleI	GAGTC	1 cut(s)	50
PpsI	GAGTC	1 cut(s)	50
Psp1406I	AACGTT	1 cut(s)	972
Psp6I	CCWGG	1 cut(s)	910
PspGI	CCWGG	1 cut(s)	910
PspN4I	GGNNCC	4 cut(s)	649, 956, 1004, 1375
PspPI	GGNCC	1 cut(s)	197
PsrI	GAACNNNNNNTAC	2 cut(s)	287, 319
PsuI	RGATCY	2 cut(s)	469, 1326
RsaI	GTAC	5 cut(s)	368, 497, 1004, 1061, 1274
RsaNI	GTAC	5 cut(s)	367, 496, 1003, 1060, 1273
RseI	CAYNNNNRTG	2 cut(s)	305, 456
SaqAI	TTAA	2 cut(s)	1128, 1203
SatI	GCNGC	7 cut(s)	408, 579, 877, 891, 1047, 1050, 1368
Sau3AI	GATC	7 cut(s)	274, 437, 469, 791, 1139, 1326, 1396
Sau96I	GGNCC	1 cut(s)	197
ScaI	AGTACT	1 cut(s)	368
SchI	GAGTC	1 cut(s)	50
ScrFI	CCNGG	2 cut(s)	912, 1064
SduI	GDGCHC	1 cut(s)	121
SfaNI	GCATC	3 cut(s)	301, 419, 522
SfcI	CTRYAG	1 cut(s)	402
SmiMI	CAYNNNNRTG	2 cut(s)	305, 456
Sse9I	AATT	8 cut(s)	138, 606, 624, 774, 786, 834, 1072, 1251
SsiI	CCGC	5 cut(s)	44, 462, 578, 581, 999
SspMI	CTAG	5 cut(s)	329, 377, 614, 959, 1432
StyD4I	CCNGG	2 cut(s)	910, 1062
StyI	CCWWGG	2 cut(s)	159, 328
TaaI	ACNGT	3 cut(s)	272, 856, 1070
TaiI	ACGT	1 cut(s)	975
TaqI	TCGA	1 cut(s)	549
TasI	AATT	8 cut(s)	138, 606, 624, 774, 786, 834, 1072, 1251
TatI	WGTACW	2 cut(s)	366, 1272
TauI	GCSGC	1 cut(s)	581
TfiI	GAWTC	4 cut(s)	538, 717, 1236, 1390
Tru1I	TTAA	2 cut(s)	1128, 1203
Tru9I	TTAA	2 cut(s)	1128, 1203
TscAI	CASTG	4 cut(s)	277, 931, 1124, 1149
TseFI	GTSAC	2 cut(s)	226, 688
TseI	GCWGC	6 cut(s)	407, 876, 890, 1046, 1049, 1367
Tsp45I	GTSAC	2 cut(s)	226, 688
TspDTI	ATGAA	2 cut(s)	833, 1066
TspRI	CASTG	4 cut(s)	277, 931, 1124, 1149
XapI	RAATTY	1 cut(s)	774
XceI	RCATGY	1 cut(s)	868
XmaJI	CCTAGG	1 cut(s)	328
XspI	CTAG	5 cut(s)	329, 377, 614, 959, 1432
ZrmI	AGTACT	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.