Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000456.1

Orthogroup ID

OG0013184

Physical Location & Seq

Genomic Coordinates Forward (+)

29027 .. 32463

Gene Structure 3437 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

atgatactaacacagttaagagaggaagaactgaagaagaagaagactatgcggctcagagagtcagagtcgggaggaagagagagaatagtgagtgattttgctgccgaactctctaggagatctctctgtatcatcgcggtggtgattgtctcgtcgtcattccccctcagcctcagcctcagcctcaggattaatttcaaaaagatgaagagcgcagctcagccggcccagattccgacgagcttcggcaacgagcttagagcctgcctccgttgccgcctcgtcaagacctacgatcagttcagagaaaacggatgcgagaactgccccttcttcaagatggatgaagatagcgacctggtcaacgaaggcactactcccaatttcaatggcatcatttcagtcatggatcctgacaagagctgggctgctaagtggcttcgaatttcgaggtttgttcctggttgctacactcttgcagtttcagaggctctttccgaggatttgcagaatatatgtgaagatgagcatgtgcaatatgtaccaccaaaacgtgtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0003676 GO:0003700 GO:0003723 GO:0003727 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006325 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006996 GO:0008023 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032044 GO:0032784 GO:0032991 GO:0034243 GO:0034641 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Spt4

Protein Analysis

187

Amino Acids

21.27

Weight (kDa)

8.15

Isoelectric Point (pI)

50.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Spt4	PF06093	87 - 163	1e-30	Spt4/RpoE2 zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013184)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08565 AT5G08565 AT5G63670
fragaria_vesca	FvH4_4g10630
malus_domestica	MD04G1047800.v1.1 MD07G1114100.v1.1 MD09G1278200.v1.1 MD17G1271200.v1.1
prunus_persica	Prupe.3G015100_v2.0.a1
pyrus_communis	pycom04g04180
rosa_chinensis	RchiOBHm_Chr4g0406241
rosa_laevigata	RLG00000008786
rosa_multiflora	Rmu_ssc0000456.1_g000008
rosa_roxburghii	Rroxscaffold_5G00350980
rosa_rugosa	Rorug04G0067100
rosa_samantha	Rh4BG134100
rosa_wichuraiana	Rw4G011070 Rw4G011210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	140
AciI	CCGC	3 cut(s)	52, 140, 280
AclWI	GGATC	2 cut(s)	407, 420
AcsI	RAATTY	1 cut(s)	447
AcuI	CTGAAG	1 cut(s)	53
AfaI	GTAC	1 cut(s)	546
AflIII	ACRYGT	1 cut(s)	556
AgsI	TTSAA	3 cut(s)	202, 340, 391
AjnI	CCWGG	2 cut(s)	360, 463
AluBI	AGCT	4 cut(s)	221, 246, 259, 426
AluI	AGCT	4 cut(s)	221, 246, 259, 426
Alw26I	GTCTC	1 cut(s)	157
AlwI	GGATC	2 cut(s)	407, 420
AoxI	GGCC	1 cut(s)	228
ApeKI	GCWGC	3 cut(s)	104, 218, 431
ApoI	RAATTY	1 cut(s)	447
AseI	ATTAAT	1 cut(s)	195
AspLEI	GCGC	1 cut(s)	218
AspS9I	GGNCC	1 cut(s)	229
AsuHPI	GGTGA	1 cut(s)	157
AsuII	TTCGAA	1 cut(s)	445
AxyI	CCTNAGG	1 cut(s)	188
BamHI	GGATCC	1 cut(s)	412
BbsI	GAAGAC	1 cut(s)	50
BbvCI	CCTCAGC	3 cut(s)	170, 176, 182
BbvI	GCAGC	3 cut(s)	91, 230, 418
BccI	CCATC	1 cut(s)	337
BciT130I	CCWGG	2 cut(s)	362, 465
BcoDI	GTCTC	1 cut(s)	157
BfaI	CTAG	1 cut(s)	117
BglII	AGATCT	1 cut(s)	122
BisI	GCNGC	5 cut(s)	53, 105, 219, 280, 432
BlpI	GCTNAGC	1 cut(s)	222
BlsI	GCNGC	5 cut(s)	54, 106, 220, 281, 433
Bme1390I	CCNGG	2 cut(s)	362, 465
BmgT120I	GGNCC	1 cut(s)	229
BmiI	GGNNCC	1 cut(s)	414
BmrFI	CCNGG	2 cut(s)	362, 465
BmsI	GCATC	2 cut(s)	308, 405
BpiI	GAAGAC	1 cut(s)	50
BplI	GAGNNNNNCTC	4 cut(s)	205, 237, 255, 287
Bpu10I	CCTNAGC	3 cut(s)	170, 176, 182
Bpu1102I	GCTNAGC	1 cut(s)	222
Bpu14I	TTCGAA	1 cut(s)	445
BsaJI	CCNNGG	1 cut(s)	501
Bse118I	RCCGGY	1 cut(s)	226
Bse21I	CCTNAGG	1 cut(s)	188
BseBI	CCWGG	2 cut(s)	362, 465
BseDI	CCNNGG	1 cut(s)	501
BseGI	GGATG	2 cut(s)	323, 352
BseMII	CTCAG	6 cut(s)	70, 184, 190, 196, 202, 236
BseXI	GCAGC	3 cut(s)	91, 230, 418
BseYI	CCCAGC	1 cut(s)	426
Bsh1236I	CGCG	1 cut(s)	140
BshFI	GGCC	1 cut(s)	230
BsiSI	CCGG	1 cut(s)	227
BsmAI	GTCTC	1 cut(s)	157
BsnI	GGCC	1 cut(s)	230
Bsp119I	TTCGAA	1 cut(s)	445
Bsp143I	GATC	3 cut(s)	122, 298, 412
Bsp1720I	GCTNAGC	1 cut(s)	222
BspACI	CCGC	3 cut(s)	52, 140, 280
BspANI	GGCC	1 cut(s)	230
BspCNI	CTCAG	6 cut(s)	69, 183, 189, 195, 201, 235
BspFNI	CGCG	1 cut(s)	140
BspLI	GGNNCC	1 cut(s)	414
BspPI	GGATC	2 cut(s)	407, 420
BspQI	GCTCTTC	1 cut(s)	206
BspT104I	TTCGAA	1 cut(s)	445
BsrFI	RCCGGY	1 cut(s)	226
BssAI	RCCGGY	1 cut(s)	226
BssECI	CCNNGG	1 cut(s)	501
BssMI	GATC	3 cut(s)	122, 298, 412
Bst2UI	CCWGG	2 cut(s)	362, 465
Bst4CI	ACNGT	1 cut(s)	15
Bst6I	CTCTTC	2 cut(s)	73, 206
BstBI	TTCGAA	1 cut(s)	445
BstC8I	GCNNGC	2 cut(s)	228, 268
BstDEI	CTNAG	8 cut(s)	56, 170, 176, 182, 188, 222, 260, 435
BstF5I	GGATG	2 cut(s)	323, 352
BstFNI	CGCG	1 cut(s)	140
BstHHI	GCGC	1 cut(s)	218
BstKTI	GATC	3 cut(s)	125, 301, 415
BstMAI	GTCTC	1 cut(s)	157
BstMBI	GATC	3 cut(s)	122, 298, 412
BstMWI	GCNNNNNNNGC	3 cut(s)	227, 276, 327
BstNI	CCWGG	2 cut(s)	362, 465
BstNSI	RCATGY	1 cut(s)	536
BstSCI	CCNGG	2 cut(s)	360, 463
BstUI	CGCG	1 cut(s)	140
BstV1I	GCAGC	3 cut(s)	91, 230, 418
BstV2I	GAAGAC	1 cut(s)	50
BstX2I	RGATCY	2 cut(s)	122, 412
BstYI	RGATCY	2 cut(s)	122, 412
Bsu36I	CCTNAGG	1 cut(s)	188
BsuRI	GGCC	1 cut(s)	230
BtgZI	GCGATG	1 cut(s)	121
BtsCI	GGATG	2 cut(s)	323, 352
Cac8I	GCNNGC	2 cut(s)	228, 268
CfoI	GCGC	1 cut(s)	218
Cfr10I	RCCGGY	1 cut(s)	226
Cfr13I	GGNCC	1 cut(s)	229
CsiI	ACCWGGT	1 cut(s)	360
Csp6I	GTAC	1 cut(s)	545
CviAII	CATG	2 cut(s)	409, 533
CviQI	GTAC	1 cut(s)	545
DdeI	CTNAG	8 cut(s)	56, 170, 176, 182, 188, 222, 260, 435
DpnI	GATC	3 cut(s)	124, 300, 414
DpnII	GATC	3 cut(s)	122, 298, 412
Eam1104I	CTCTTC	2 cut(s)	73, 206
EarI	CTCTTC	2 cut(s)	73, 206
Eco57I	CTGAAG	1 cut(s)	53
Eco81I	CCTNAGG	1 cut(s)	188
EcoRII	CCWGG	2 cut(s)	360, 463
FaeI	CATG	2 cut(s)	412, 536
FaiI	YATR	7 cut(s)	50, 410, 518, 520, 534, 543, 562
FatI	CATG	2 cut(s)	408, 532
Fnu4HI	GCNGC	5 cut(s)	53, 105, 219, 280, 432
FokI	GGATG	2 cut(s)	330, 359
Fsp4HI	GCNGC	5 cut(s)	53, 105, 219, 280, 432
FspBI	CTAG	1 cut(s)	117
GlaI	GCGC	1 cut(s)	217
GluI	GCNGC	5 cut(s)	53, 105, 219, 280, 432
GsaI	CCCAGC	1 cut(s)	430
HaeIII	GGCC	1 cut(s)	230
HapII	CCGG	1 cut(s)	227
HhaI	GCGC	1 cut(s)	218
Hin1II	CATG	2 cut(s)	412, 536
Hin6I	GCGC	1 cut(s)	216
HinP1I	GCGC	1 cut(s)	216
HincII	GTYRAC	1 cut(s)	367
HindII	GTYRAC	1 cut(s)	367
HinfI	GANTC	3 cut(s)	62, 68, 235
HpaII	CCGG	1 cut(s)	227
HphI	GGTGA	1 cut(s)	157
Hpy166II	GTNNAC	1 cut(s)	367
Hpy188I	TCNGA	6 cut(s)	59, 67, 240, 308, 490, 502
Hpy188III	TCNNGA	5 cut(s)	72, 190, 289, 340, 416
Hpy8I	GTNNAC	1 cut(s)	367
Hpy99I	CGWCG	2 cut(s)	160, 244
HpyAV	CCTTC	2 cut(s)	343, 365
HpyCH4III	ACNGT	1 cut(s)	15
HpyCH4IV	ACGT	1 cut(s)	556
HpyCH4V	TGCA	3 cut(s)	482, 511, 538
HpyF10VI	GCNNNNNNNGC	3 cut(s)	227, 276, 327
HpyF3I	CTNAG	8 cut(s)	56, 170, 176, 182, 188, 222, 260, 435
HpySE526I	ACGT	1 cut(s)	556
Hsp92II	CATG	2 cut(s)	412, 536
HspAI	GCGC	1 cut(s)	216
KroI	GCCGGC	1 cut(s)	226
KroNI	GCCGGC	1 cut(s)	228
Kzo9I	GATC	3 cut(s)	122, 298, 412
LguI	GCTCTTC	1 cut(s)	206
Lsp1109I	GCAGC	3 cut(s)	91, 230, 418
LweI	GCATC	2 cut(s)	308, 405
MabI	ACCWGGT	1 cut(s)	360
MaeI	CTAG	1 cut(s)	117
MaeII	ACGT	1 cut(s)	556
MalI	GATC	3 cut(s)	124, 300, 414
MboI	GATC	3 cut(s)	122, 298, 412
MflI	RGATCY	2 cut(s)	122, 412
MluCI	AATT	3 cut(s)	196, 385, 447
MlyI	GAGTC	2 cut(s)	71, 77
MmeI	TCCRAC	1 cut(s)	263
MroNI	GCCGGC	1 cut(s)	226
MseI	TTAA	2 cut(s)	17, 195
MslI	CAYNNNNRTG	1 cut(s)	140
MspI	CCGG	1 cut(s)	227
MspR9I	CCNGG	2 cut(s)	362, 465
MvaI	CCWGG	2 cut(s)	362, 465
MvnI	CGCG	1 cut(s)	140
MwoI	GCNNNNNNNGC	3 cut(s)	227, 276, 327
NaeI	GCCGGC	1 cut(s)	228
NdeII	GATC	3 cut(s)	122, 298, 412
NgoMIV	GCCGGC	1 cut(s)	226
NlaIII	CATG	2 cut(s)	412, 536
NlaIV	GGNNCC	1 cut(s)	414
NspI	RCATGY	1 cut(s)	536
NspV	TTCGAA	1 cut(s)	445
PciSI	GCTCTTC	1 cut(s)	206
PdiI	GCCGGC	1 cut(s)	228
PfeI	GAWTC	1 cut(s)	235
PflFI	GACNNNGTC	1 cut(s)	362
PkrI	GCNGC	5 cut(s)	54, 106, 220, 281, 433
PleI	GAGTC	2 cut(s)	70, 76
PpsI	GAGTC	2 cut(s)	70, 76
PshBI	ATTAAT	1 cut(s)	195
Psp6I	CCWGG	2 cut(s)	360, 463
PspFI	CCCAGC	1 cut(s)	426
PspGI	CCWGG	2 cut(s)	360, 463
PspN4I	GGNNCC	1 cut(s)	414
PspPI	GGNCC	1 cut(s)	229
PsuI	RGATCY	2 cut(s)	122, 412
PsyI	GACNNNGTC	1 cut(s)	362
RsaI	GTAC	1 cut(s)	546
RsaNI	GTAC	1 cut(s)	545
RseI	CAYNNNNRTG	1 cut(s)	140
SapI	GCTCTTC	1 cut(s)	206
SaqAI	TTAA	2 cut(s)	17, 195
SatI	GCNGC	5 cut(s)	53, 105, 219, 280, 432
Sau3AI	GATC	3 cut(s)	122, 298, 412
Sau96I	GGNCC	1 cut(s)	229
SchI	GAGTC	2 cut(s)	71, 77
ScrFI	CCNGG	2 cut(s)	362, 465
SetI	ASST	8 cut(s)	223, 248, 261, 296, 363, 428, 458, 559
SexAI	ACCWGGT	1 cut(s)	360
SfaNI	GCATC	2 cut(s)	308, 405
SfuI	TTCGAA	1 cut(s)	445
SmiMI	CAYNNNNRTG	1 cut(s)	140
Sse9I	AATT	3 cut(s)	196, 385, 447
SsiI	CCGC	3 cut(s)	52, 140, 280
SspMI	CTAG	1 cut(s)	117
StyD4I	CCNGG	2 cut(s)	360, 463
TaaI	ACNGT	1 cut(s)	15
TaiI	ACGT	1 cut(s)	559
TaqI	TCGA	2 cut(s)	445, 452
TasI	AATT	3 cut(s)	196, 385, 447
TauI	GCSGC	2 cut(s)	55, 282
TfiI	GAWTC	1 cut(s)	235
Tru1I	TTAA	2 cut(s)	17, 195
Tru9I	TTAA	2 cut(s)	17, 195
TseI	GCWGC	3 cut(s)	104, 218, 431
TspDTI	ATGAA	2 cut(s)	224, 363
TspGWI	ACGGA	2 cut(s)	263, 330
Tth111I	GACNNNGTC	1 cut(s)	362
VspI	ATTAAT	1 cut(s)	195
XapI	RAATTY	1 cut(s)	447
XceI	RCATGY	1 cut(s)	536
XspI	CTAG	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.