Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000456.1

Orthogroup ID

OG0006348

Physical Location & Seq

Genomic Coordinates Reverse (-)

138259 .. 139531

Gene Structure 1273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

atggagttggaatcaagttacgaaattgggaggacagcggagttcattgagagtaataacttcaggagagtggctttacagttcccggatgagcttctgaaggagtcggtgagggttgtgagtgctctgagggcctcactcaacagcaaggaggaagtggggctgttcctaatggcggacacggcctacggtagttgctgtgtggacgaagttggagcatcgcatgtcgacgccgattgcgttgttcattatggccacacctgcctcagcccgacaacaaagcttccggcattgtttgtttttgggaaggctccaatcactgtatctgattgcgcaaacaagctgtcacattatgctcaaccaagtggaaagcctgttttggttctttttgggttggattatgcacattccatacagcaaataagagaaactgtcatggcagcaggtggatccgagtgcaagcgagaagttctatttgctaatgtaatgtgttcagttatgaatccatcaaaagatcctcaactctccaatgacatcgtaggagcagctgatggccttactagtagtaacagttttgggacggtatctggtaatgtttatagcattggaggcttggtctgggaattacctgagggacgcaaaatggaggattacttacttttctggatcggttccgataactcagcctttgcaaacattgtgttaacatatagtggctgtgaaataggtaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006417 GO:0006448 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0010608 GO:0017182 GO:0017183 GO:0018193 GO:0018202 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0032268 GO:0034248 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1900247 GO:1901564 GO:2000112 GO:2000765

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Diphthamide_syn

Protein Analysis

244

Amino Acids

26.34

Weight (kDa)

4.86

Isoelectric Point (pI)

40.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Diphthamide_syn	PF01866	28 - 150	3.8e-34	Putative diphthamide synthesis protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006348)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59630 AT3G59630 AT3G59630
fragaria_vesca	FvH4_4g10580 FvH4_4g10580 FvH4_4g10580 FvH4_4g10580 FvH4_4g10580 FvH4_4g10580 FvH4_4g10580 FvH4_4g10580 FvH4_4g10580
malus_domestica	MD04G1048400.v1.1
prunus_persica	Prupe.1G080200_v2.0.a1
pyrus_communis	pycom04g04270
rosa_chinensis	RchiOBHm_Chr4g0406211
rosa_laevigata	RLG00000008789
rosa_multiflora	Rmu_sc0012210.1_g000001 Rmu_ssc0000456.1_g000017 Rmu_ssc0000456.1_g000024
rosa_roxburghii	Rroxscaffold_5G00350920
rosa_rugosa	Rorug04G0066000
rosa_samantha	Rh4AG136300 Rh4BG133700 Rh4CG144500 Rh4DG131200
rosa_wichuraiana	Rw4G011180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	269, 434
Acc16I	TGCGCA	1 cut(s)	334
Acc36I	ACCTGC	2 cut(s)	269, 434
AccI	GTMKAC	1 cut(s)	228
AciI	CCGC	2 cut(s)	38, 176
AclWI	GGATC	4 cut(s)	444, 457, 509, 674
AcoI	YGGCCR	1 cut(s)	253
AcuI	CTGAAG	2 cut(s)	46, 119
AcyI	GRCGYC	1 cut(s)	231
AfiI	CCNNNNNNNGG	1 cut(s)	175
AhlI	ACTAGT	1 cut(s)	560
AluBI	AGCT	4 cut(s)	94, 283, 343, 548
AluI	AGCT	4 cut(s)	94, 283, 343, 548
Alw21I	GWGCWC	1 cut(s)	127
AlwI	GGATC	4 cut(s)	444, 457, 509, 674
AoxI	GGCC	4 cut(s)	132, 183, 253, 553
ApeKI	GCWGC	2 cut(s)	440, 545
ArsI	GACNNNNNNTTYG	2 cut(s)	329, 361
AspLEI	GCGC	1 cut(s)	335
AspS9I	GGNCC	1 cut(s)	132
AsuC2I	CCSGG	1 cut(s)	86
AsuHPI	GGTGA	1 cut(s)	121
AxyI	CCTNAGG	1 cut(s)	630
BalI	TGGCCA	1 cut(s)	255
BamHI	GGATCC	1 cut(s)	449
Bbv12I	GWGCWC	1 cut(s)	127
BbvCI	CCTCAGC	1 cut(s)	266
BbvI	GCAGC	2 cut(s)	452, 557
BccI	CCATC	2 cut(s)	514, 545
BceAI	ACGGC	1 cut(s)	198
BcnI	CCSGG	1 cut(s)	86
BcuI	ACTAGT	1 cut(s)	560
BfaI	CTAG	1 cut(s)	561
BfuAI	ACCTGC	2 cut(s)	269, 434
BisI	GCNGC	2 cut(s)	441, 546
BlsI	GCNGC	2 cut(s)	442, 547
Bme1390I	CCNGG	1 cut(s)	86
BmgT120I	GGNCC	1 cut(s)	132
BmiI	GGNNCC	3 cut(s)	312, 451, 673
BmrFI	CCNGG	1 cut(s)	86
BmsI	GCATC	1 cut(s)	227
Bpu10I	CCTNAGC	1 cut(s)	266
BpuMI	CCSGG	1 cut(s)	86
BsaHI	GRCGYC	1 cut(s)	231
BsaXI	ACNNNNNCTCC	2 cut(s)	600, 630
Bsc4I	CCNNNNNNNGG	1 cut(s)	175
Bse21I	CCTNAGG	1 cut(s)	630
BseGI	GGATG	1 cut(s)	94
BseLI	CCNNNNNNNGG	1 cut(s)	175
BseMII	CTCAG	4 cut(s)	119, 280, 621, 696
BseXI	GCAGC	2 cut(s)	452, 557
BshFI	GGCC	4 cut(s)	134, 185, 255, 555
BsiHKAI	GWGCWC	1 cut(s)	127
BsiSI	CCGG	2 cut(s)	86, 287
BslFI	GGGAC	2 cut(s)	592, 648
BslI	CCNNNNNNNGG	1 cut(s)	175
BsmFI	GGGAC	2 cut(s)	592, 648
BsnI	GGCC	4 cut(s)	134, 185, 255, 555
Bsp1286I	GDGCHC	1 cut(s)	127
Bsp143I	GATC	3 cut(s)	449, 514, 666
BspACI	CCGC	2 cut(s)	38, 176
BspANI	GGCC	4 cut(s)	134, 185, 255, 555
BspCNI	CTCAG	4 cut(s)	120, 279, 622, 695
BspLI	GGNNCC	3 cut(s)	312, 451, 673
BspMI	ACCTGC	2 cut(s)	269, 434
BspPI	GGATC	4 cut(s)	444, 457, 509, 674
BssMI	GATC	3 cut(s)	449, 514, 666
BssNI	GRCGYC	1 cut(s)	231
Bst4CI	ACNGT	6 cut(s)	81, 191, 322, 433, 572, 583
BstACI	GRCGYC	1 cut(s)	231
BstC8I	GCNNGC	1 cut(s)	461
BstDEI	CTNAG	4 cut(s)	128, 266, 630, 682
BstF5I	GGATG	1 cut(s)	94
BstHHI	GCGC	1 cut(s)	335
BstKTI	GATC	3 cut(s)	452, 517, 669
BstMBI	GATC	3 cut(s)	449, 514, 666
BstMWI	GCNNNNNNNGC	4 cut(s)	131, 182, 261, 609
BstNSI	RCATGY	1 cut(s)	227
BstSCI	CCNGG	1 cut(s)	84
BstV1I	GCAGC	2 cut(s)	452, 557
BstX2I	RGATCY	2 cut(s)	449, 514
BstYI	RGATCY	2 cut(s)	449, 514
Bsu36I	CCTNAGG	1 cut(s)	630
BsuRI	GGCC	4 cut(s)	134, 185, 255, 555
BtgZI	GCGATG	1 cut(s)	204
BtsCI	GGATG	1 cut(s)	94
BtsIMutI	CAGTG	1 cut(s)	318
BveI	ACCTGC	2 cut(s)	269, 434
Cac8I	GCNNGC	1 cut(s)	461
CfoI	GCGC	1 cut(s)	335
Cfr13I	GGNCC	1 cut(s)	132
CseI	GACGC	2 cut(s)	239, 645
CviAII	CATG	2 cut(s)	224, 436
DdeI	CTNAG	4 cut(s)	128, 266, 630, 682
DpnI	GATC	3 cut(s)	451, 516, 668
DpnII	GATC	3 cut(s)	449, 514, 666
EaeI	YGGCCR	1 cut(s)	253
EciI	GGCGGA	1 cut(s)	191
Eco57I	CTGAAG	2 cut(s)	46, 119
Eco81I	CCTNAGG	1 cut(s)	630
EcoO109I	RGGNCCY	1 cut(s)	132
FaeI	CATG	2 cut(s)	227, 439
FaqI	GGGAC	2 cut(s)	592, 648
FatI	CATG	2 cut(s)	223, 435
FblI	GTMKAC	1 cut(s)	228
Fnu4HI	GCNGC	2 cut(s)	441, 546
FokI	GGATG	1 cut(s)	101
Fsp4HI	GCNGC	2 cut(s)	441, 546
FspBI	CTAG	1 cut(s)	561
FspI	TGCGCA	1 cut(s)	334
GlaI	GCGC	1 cut(s)	334
GluI	GCNGC	2 cut(s)	441, 546
HaeIII	GGCC	4 cut(s)	134, 185, 255, 555
HapII	CCGG	2 cut(s)	86, 287
HgaI	GACGC	2 cut(s)	239, 645
HhaI	GCGC	1 cut(s)	335
Hin1I	GRCGYC	1 cut(s)	231
Hin1II	CATG	2 cut(s)	227, 439
Hin6I	GCGC	1 cut(s)	333
HinP1I	GCGC	1 cut(s)	333
HincII	GTYRAC	2 cut(s)	229, 705
HindII	GTYRAC	2 cut(s)	229, 705
HindIII	AAGCTT	1 cut(s)	281
HinfI	GANTC	3 cut(s)	11, 104, 502
HpaI	GTTAAC	1 cut(s)	705
HpaII	CCGG	2 cut(s)	86, 287
HphI	GGTGA	1 cut(s)	121
Hpy166II	GTNNAC	3 cut(s)	205, 229, 705
Hpy188I	TCNGA	5 cut(s)	99, 129, 328, 454, 676
Hpy188III	TCNNGA	2 cut(s)	64, 664
Hpy8I	GTNNAC	3 cut(s)	205, 229, 705
Hpy99I	CGWCG	1 cut(s)	233
HpyAV	CCTTC	2 cut(s)	94, 301
HpyCH4III	ACNGT	6 cut(s)	81, 191, 322, 433, 572, 583
HpyCH4V	TGCA	3 cut(s)	404, 459, 692
HpyF10VI	GCNNNNNNNGC	4 cut(s)	131, 182, 261, 609
HpyF3I	CTNAG	4 cut(s)	128, 266, 630, 682
Hsp92I	GRCGYC	1 cut(s)	231
Hsp92II	CATG	2 cut(s)	227, 439
HspAI	GCGC	1 cut(s)	333
KspAI	GTTAAC	1 cut(s)	705
Kzo9I	GATC	3 cut(s)	449, 514, 666
LmnI	GCTCC	3 cut(s)	215, 316, 542
Lsp1109I	GCAGC	2 cut(s)	452, 557
LweI	GCATC	1 cut(s)	227
MaeI	CTAG	1 cut(s)	561
MaeIII	GTNAC	3 cut(s)	17, 345, 566
MalI	GATC	3 cut(s)	451, 516, 668
MboI	GATC	3 cut(s)	449, 514, 666
MflI	RGATCY	2 cut(s)	449, 514
MhlI	GDGCHC	1 cut(s)	127
MlsI	TGGCCA	1 cut(s)	255
MluCI	AATT	2 cut(s)	24, 623
MluNI	TGGCCA	1 cut(s)	255
MlyI	GAGTC	1 cut(s)	113
MmeI	TCCRAC	2 cut(s)	193, 375
Mox20I	TGGCCA	1 cut(s)	255
MscI	TGGCCA	1 cut(s)	255
MseI	TTAA	1 cut(s)	704
Msp20I	TGGCCA	1 cut(s)	255
MspA1I	CMGCKG	2 cut(s)	38, 548
MspI	CCGG	2 cut(s)	86, 287
MspR9I	CCNGG	1 cut(s)	86
MwoI	GCNNNNNNNGC	4 cut(s)	131, 182, 261, 609
NciI	CCSGG	1 cut(s)	86
NdeII	GATC	3 cut(s)	449, 514, 666
NlaIII	CATG	2 cut(s)	227, 439
NlaIV	GGNNCC	3 cut(s)	312, 451, 673
NmuCI	GTSAC	1 cut(s)	345
NsbI	TGCGCA	1 cut(s)	334
NspI	RCATGY	1 cut(s)	227
PaqCI	CACCTGC	2 cut(s)	269, 434
PcsI	WCGNNNNNNNCGW	1 cut(s)	237
PfeI	GAWTC	2 cut(s)	11, 502
PfoI	TCCNGGA	1 cut(s)	84
PkrI	GCNGC	2 cut(s)	442, 547
PleI	GAGTC	1 cut(s)	112
PpsI	GAGTC	1 cut(s)	112
PspN4I	GGNNCC	3 cut(s)	312, 451, 673
PspPI	GGNCC	1 cut(s)	132
PsuI	RGATCY	2 cut(s)	449, 514
PvuII	CAGCTG	1 cut(s)	548
SalI	GTCGAC	1 cut(s)	227
SaqAI	TTAA	1 cut(s)	704
SatI	GCNGC	2 cut(s)	441, 546
Sau3AI	GATC	3 cut(s)	449, 514, 666
Sau96I	GGNCC	1 cut(s)	132
SchI	GAGTC	1 cut(s)	113
ScrFI	CCNGG	1 cut(s)	86
SduI	GDGCHC	1 cut(s)	127
SetI	ASST	8 cut(s)	96, 263, 285, 345, 448, 550, 631, 730
SfaNI	GCATC	1 cut(s)	227
SpeI	ACTAGT	1 cut(s)	560
Sse9I	AATT	2 cut(s)	24, 623
SsiI	CCGC	2 cut(s)	38, 176
SspMI	CTAG	1 cut(s)	561
StyD4I	CCNGG	1 cut(s)	84
TaaI	ACNGT	6 cut(s)	81, 191, 322, 433, 572, 583
TaqI	TCGA	1 cut(s)	228
TasI	AATT	2 cut(s)	24, 623
TfiI	GAWTC	2 cut(s)	11, 502
Tru1I	TTAA	1 cut(s)	704
Tru9I	TTAA	1 cut(s)	704
TscAI	CASTG	1 cut(s)	325
TseFI	GTSAC	1 cut(s)	345
TseI	GCWGC	2 cut(s)	440, 545
Tsp45I	GTSAC	1 cut(s)	345
TspDTI	ATGAA	3 cut(s)	34, 236, 515
TspRI	CASTG	1 cut(s)	325
XceI	RCATGY	1 cut(s)	227
XmiI	GTMKAC	1 cut(s)	228
XspI	CTAG	1 cut(s)	561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.