Rmu_ssc0000469.1_g000001

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000469.1
OG0005061
Physical Location & Seq
Forward (+)
211 .. 11918
11708 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 4539 bp
atggcaacttctagcaagtttgatctctcttctggtagcccagatagaccattatataccagtgggcagcgtgggtcccacatggctgcttcactggaaagacctggtagctttcgcgagagcatggaaaatccaattttgtcttcacttccaaacatgtcaagaagcacgtctgcaatagcccaaggagatgtgacaaacttcttacaatgcttgcgcttcgacccaaaacaggtggccgcagagcacaagtctaaccgacaaggggacttgaaaagacttgtgaatgttgctcttagcatttcacctgatgaatctccgtctagttctgtgaaaggtaagttgctaccagccccactaccggaggatgtaaaacgagtgaaggctggtctccttgaaagcaatgttaaagccaggcaacgcgtaaagattttcaatgaagcattatctgtattcaacaaggtttttcccagtgtaccatcaaagaagagatcaagaactgaaagtttttctaatgaacggtctgctgtggtgttaccaactgatcggtcaatgatggtgccaagcatgggtaagattggtatgcagagtcatgctgtggcaggtggttttgaacttgagcagcaaaacaagtttgatctctcttctggtagcccagatagaccattatataccagtgggcagcgtgggtcccacatggctgcttcactggaaagacctggtagctttcgcgagagcatggaaaatccaattttgtcttcacttccaaacatgtcaagaagcacgtctgcaatagcccaaggagatgtgacaaacttcttacaatgcttgcgcttcgacccaaaacaggtggccgcagagcacaagtctaaccgacaaggggacttgaaaagacttgtgaatgttgctcttagcatttcacctgatgaatctccgtctagttctgtgaaaggtaagttgctaccagccccactaccggaggatgtaaaacgagtgaaggctggtctccttgaaagcaatgttaaagccaggcaacgcgtaaagattttcaatgaagcattatctgtattcaacaaggtttttcccagtgtaccatcaaagaagagatcaagaactgaaagtttttctaatgaacggtctgctgtggtgttaccaactgatcggtcaatgatggtgccaagcatgggtaagattggtatgcagagtcatgctgtggcaggtggttttgaacttgagcagcaaaagtcagaagaaaggacaaaaaattctgtcccgaacaaacgcactcgtacttctttggtggatgtgaggatggatgtgcgaagtaatactcttgtacgaccatcgggggctgtagaaagagaaagggaaatgatgaggcttgcaagtagtggtgcggttcagggagaggaacgtaatctatctatcagtgttgatggttgggaaaaatcaaaaatgaagaaaaagcgttctgggataaagccagatgtttctccaatggtgaccagtaaaccaattgatggctaccgtgaaactaaacaggggatgcagcaaaggcctgttaatgatgtccgttccaggttgaataatgactcccatgggttcaggcctggagtcactaatggagcagttggagttggaaagtcggacggaatcacacaaccaactggcccagccttccgttcatccatccctaagactgaaccagacaacccttcccttatcaacgataagagagatcgtcctattggttcagataaggaaagggtgaaccagagagctgttaataaatcaaatgctcgtgatgattttaattctgctagtcccacctctagtacaaagatgaatgcatctgttcgggctccgcgatcaggctcagctgttgcacccaagttgtccccagttgttcatcgagcaactgttcctaatgattgggagatatctcaatgtacaaacaagcccccggctgttgttggagctaacaatcgcaaacgcatgacatcagcacgatcttcatccccacctgttgcacaatgggctggccagagaccacagaagatgtcccgcactgctagacgatcaaatttcaatccaattgtttcaggtaatgaggaaaaccctgctattgatagtgcatcggacgtcactggtagtgacatcgggcaaggattcgccagacgcttacccggaagttctcctcagcaagttaagttaaaaagtgaacctttgtcttcagctgcactatcagagagtgaggagtcgggagttgctgaggtcaaatccagagacaaaggcaaaaaatccgatgagatagatgagaaacctggacagaatattcaaattcaaaaggtgcctagtctggtcttgccatcaagaaaacataagtcggctcccggggaagaccttggagatggtgttcggaggcaggggagaacaggacgaggttttgcttcgacaaggtctcttgtcccaatgtctgttgagaagatgggaaatgttggtactgctaaacagctgagaagttccagacttggtgtagataagagtgaaagcaaggcaggccgtccaccaactaggagactttctgatcgaaaggcctatacacgtcaaaagcatacagcaattaatacagcagcagattttctcgttgggtcagatgatggacatgaagagctaatgactgctacaaaagctgtcattgattctgctcgttccttctccagctcattttggaagcagatggagccattttttggttttttatctgatgcagacatagattacctaaagggaaacattgaagccagtgtgacgactccagccgaagtcccatgtagtttagatggtaaccttactggccattatggacttgggtcgagtgaatttgaaccaaagagtgaagagttccattccgaacaattaatgccaggcactggggattctgaaattcctctctgtcagagactcatagcagcattaatttcagaagaggattctagtagtggaaatgaagatcctgtgtttgatgcatatggagttgaatctgatctggatgcagaggtagaatcaaatggtctgaattatcaatctcaagtaaactttcagtttgctgggaattctgcttcaaatggttttaggattactgggaggccggaacatgatgagcgtgaaggtggaatccacatcccaaacagaacaattagttcaaactttggtcattcgcaaaatggtttacttccggatcaagcatttttttctggtttcgcctgttcagaattgcagtatggtaacatgcacataaatgaaaaacttctactggagattcagagtattgggatttacccagagctactgcctgacatgacacagacgggggatgacgaaatcagtggggaaattaggaaattagaggagaagtatcatgaacaggtctccaacaagaaagggctgctagatggactgtttaggtctgcctcagaaaagaaagaacgccaagcaaaggatctagaacagcgcgcccttgataaactcgttggaatggcttatgagaagtatttggcttgttgcggcccaaatgccactgggggaaagagttccagtaataaaatggctaagcaagctgccttagcatttgtcaaacggacactggaccgatgccataaatatgaagagaccggaacaagctgcttcagtgaaccgatatatagggatatacttatttctgtggcttccgatgttaatggcgcacgacaagcagaggctattgcagacggtgaatccaccaaatcatatgcctccactcgctgtttagaaggtagtgtttcagcttctgtaggctccaaacaacaccattcacagtttagtcagaatatggataataatgttacttcttcagatgtgcttccacctttaaatcacttgcctgaacaaactactggtagagaagaaacatggacgaacagggtgaagaagagggaattgtcccttgatgatgttggtagtactattggaacttcaaattccccatcaggtattggaaattctctatctagcagtgcaaaaggaaagaggagtgagagggatagagatggcaaagggcataacagggaggtcttatctagaaatggaactgctaaaattggtcggccagcagtgtccaatgttaagggtgagagaaaatcaaaaacgaagcccaagcagaaaacgactcagctatctgtttcagtaaatggccccgttggtaagatatcagaacaacccaaaccagcattgccttctgtaccaaagtctggcgaaatgactaccagtcggaatcccaagcaaaaggatcagtttccattagatgcaatggaagaccctatcgacttgtctcacctgcaattaccaggaatggatgtgttaggtgctgatgatatggatggtcaagcacaggatttaggttcatggttgaatattgatgatgatggtttacaagatcatgatttcatgggtcttgaaattccaatggatgacctttcagacttaaatatgatggtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ada3

Protein Analysis

1512

Amino Acids

164.45

Weight (kDa)

9.05

Isoelectric Point (pI)

54.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ada3 PF10198 1099 - 1213 1.9e-06 Histone acetyltransferases subunit 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 3 cut(s) 593, 1208, 4383
AatII GACGTC 1 cut(s) 2145
Acc36I ACCTGC 3 cut(s) 593, 1208, 4383
AccB1I GGYRCC 3 cut(s) 559, 1174, 2350
AccB7I CCANNNNNTGG 4 cut(s) 1520, 2753, 2933, 4289
AccII CGCG 6 cut(s) 117, 423, 732, 1038, 1867, 3516
AccIII TCCGGA 1 cut(s) 3238
AciI CCGC 6 cut(s) 240, 855, 1397, 1865, 2065, 3567
AclWI GGATC 4 cut(s) 3008, 3249, 3510, 4335
AcoI YGGCCR 5 cut(s) 237, 852, 2041, 2857, 4145
AcsI RAATTY 9 cut(s) 1264, 2083, 2340, 2882, 2946, 3115, 4018, 4039, 4497
AcuI CTGAAG 3 cut(s) 2217, 3673, 3876
AcyI GRCGYC 1 cut(s) 2142
AfaI GTAC 9 cut(s) 477, 1092, 1291, 1338, 1837, 1951, 2503, 4003, 4281
AflIII ACRYGT 5 cut(s) 156, 421, 771, 1036, 2603
AhdI GACNNNNNGTC 1 cut(s) 4305
AjiI CACGTC 3 cut(s) 171, 786, 2606
AjnI CCWGG 9 cut(s) 103, 413, 718, 1028, 1577, 1609, 2323, 2926, 4384
AjuI GAANNNNNNNTTGG 4 cut(s) 127, 159, 742, 774
AloI GAACNNNNNNTCC 2 cut(s) 2400, 2432
Alw21I GWGCWC 2 cut(s) 249, 864
AlwI GGATC 4 cut(s) 3008, 3249, 3510, 4335
AlwNI CAGNNNCTG 2 cut(s) 2933, 3830
Ama87I CYCGRG 1 cut(s) 2393
Aor13HI TCCGGA 1 cut(s) 3238
ApoI RAATTY 9 cut(s) 1264, 2083, 2340, 2882, 2946, 3115, 4018, 4039, 4497
AseI ATTAAT 3 cut(s) 2625, 2921, 2978
Asp700I GAANNNNTTC 2 cut(s) 3309, 3592
AspLEI GCGC 5 cut(s) 219, 834, 3516, 3518, 3746
AspS9I GGNCC 6 cut(s) 75, 690, 1670, 3569, 3649, 4232
AsuC2I CCSGG 4 cut(s) 1964, 2187, 2394, 2395
AsuHPI GGTGA 8 cut(s) 297, 912, 1513, 1780, 3785, 3976, 4181, 4364
AvaI CYCGRG 1 cut(s) 2393
AvaII GGWCC 3 cut(s) 75, 690, 3649
BalI TGGCCA 2 cut(s) 2043, 2859
BanI GGYRCC 3 cut(s) 559, 1174, 2350
BanII GRGCYC 1 cut(s) 1864
BauI CACGAG 1 cut(s) 1800
BbsI GAAGAC 5 cut(s) 135, 750, 2223, 2406, 4359
Bbv12I GWGCWC 2 cut(s) 249, 864
BbvCI CCTCAGC 2 cut(s) 2199, 2271
BceAI ACGGC 1 cut(s) 2547
BciT130I CCWGG 9 cut(s) 105, 415, 720, 1030, 1579, 1611, 2325, 2928, 4386
BcnI CCSGG 4 cut(s) 1964, 2187, 2394, 2395
BfmI CTRYAG 2 cut(s) 1353, 3831
BfuAI ACCTGC 3 cut(s) 593, 1208, 4383
BlpI GCTNAGC 2 cut(s) 1876, 3612
BmcAI AGTACT 1 cut(s) 4003
Bme18I GGWCC 3 cut(s) 75, 690, 3649
BmeRI GACNNNNNGTC 1 cut(s) 4305
BmeT110I CYCGRG 1 cut(s) 2393
BmgBI CACGTC 3 cut(s) 171, 786, 2606
BmgT120I GGNCC 6 cut(s) 75, 690, 1670, 3569, 3649, 4232
BmrI ACTGGG 6 cut(s) 465, 1080, 1895, 2943, 3153, 3591
BmsI GCATC 8 cut(s) 1536, 1859, 2144, 2758, 3016, 3043, 3644, 4333
BmuI ACTGGG 6 cut(s) 465, 1080, 1895, 2943, 3153, 3591
BoxI GACNNNNGTC 1 cut(s) 2872
BpiI GAAGAC 5 cut(s) 135, 750, 2223, 2406, 4359
BpmI CTGGAG 4 cut(s) 1632, 2704, 2802, 3338
Bpu10I CCTNAGC 3 cut(s) 2199, 2271, 3625
Bpu1102I GCTNAGC 2 cut(s) 1876, 3612
BpuEI CTTGAG 3 cut(s) 638, 1253, 3075
BpuMI CCSGG 4 cut(s) 1964, 2187, 2394, 2395
BsaBI GATNNNNATC 1 cut(s) 2014
BsaHI GRCGYC 1 cut(s) 2142
BsaI GGTCTC 6 cut(s) 395, 1010, 2041, 2466, 3436, 3665
BsaJI CCNNGG 7 cut(s) 184, 799, 1597, 1962, 2393, 2394, 2404
BsaWI WCCGGW 4 cut(s) 361, 976, 3238, 3674
BsaXI ACNNNNNCTCC 2 cut(s) 2400, 2430
Bse3DI GCAATG 4 cut(s) 409, 1024, 4268, 4353
Bse8I GATNNNNATC 1 cut(s) 2014
BseAI TCCGGA 1 cut(s) 3238
BseBI CCWGG 9 cut(s) 105, 415, 720, 1030, 1579, 1611, 2325, 2928, 4386
BseDI CCNNGG 7 cut(s) 184, 799, 1597, 1962, 2393, 2394, 2404
BseJI GATNNNNATC 1 cut(s) 2014
BseMI GCAATG 4 cut(s) 409, 1024, 4268, 4353
BseMII CTCAG 6 cut(s) 1890, 2213, 2262, 2507, 3489, 4223
BsePI GCGCGC 1 cut(s) 3514
BseRI GAGGAG 4 cut(s) 2187, 2270, 3425, 4084
BseYI CCCAGC 2 cut(s) 1672, 3110
BsgI GTGCAG 1 cut(s) 2223
Bsh1236I CGCG 6 cut(s) 117, 423, 732, 1038, 1867, 3516
BshNI GGYRCC 3 cut(s) 559, 1174, 2350
BsiHKAI GWGCWC 2 cut(s) 249, 864
BsiHKCI CYCGRG 1 cut(s) 2393
BsiSI CCGG 8 cut(s) 362, 977, 1964, 2187, 2394, 3152, 3239, 3675
BsmI GAATGC 1 cut(s) 1852
Bso31I GGTCTC 6 cut(s) 395, 1010, 2041, 2466, 3436, 3665
BsoBI CYCGRG 1 cut(s) 2393
Bsp1286I GDGCHC 3 cut(s) 249, 864, 1864
Bsp13I TCCGGA 1 cut(s) 3238
Bsp1407I TGTACA 1 cut(s) 1949
Bsp1720I GCTNAGC 2 cut(s) 1876, 3612
Bsp19I CCATGG 1 cut(s) 1597
Bsp68I TCGCGA 2 cut(s) 117, 732
BspACI CCGC 6 cut(s) 240, 855, 1397, 1865, 2065, 3567
BspCNI CTCAG 6 cut(s) 1889, 2212, 2263, 2508, 3488, 4222
BspEI TCCGGA 1 cut(s) 3238
BspFNI CGCG 6 cut(s) 117, 423, 732, 1038, 1867, 3516
BspHI TCATGA 2 cut(s) 3421, 4477
BspMI ACCTGC 3 cut(s) 593, 1208, 4383
BspPI GGATC 4 cut(s) 3008, 3249, 3510, 4335
BspQI GCTCTTC 1 cut(s) 2664
BspT107I GGYRCC 3 cut(s) 559, 1174, 2350
BspTNI GGTCTC 6 cut(s) 395, 1010, 2041, 2466, 3436, 3665
BsrDI GCAATG 4 cut(s) 409, 1024, 4268, 4353
BsrGI TGTACA 1 cut(s) 1949
BssECI CCNNGG 7 cut(s) 184, 799, 1597, 1962, 2393, 2394, 2404
BssHII GCGCGC 1 cut(s) 3514
BssNI GRCGYC 1 cut(s) 2142
BssSI CACGAG 1 cut(s) 1800
BssT1I CCWWGG 4 cut(s) 184, 799, 1597, 2404
Bst2BI CACGAG 1 cut(s) 1800
Bst2UI CCWGG 9 cut(s) 105, 415, 720, 1030, 1579, 1611, 2325, 2928, 4386
Bst4CI ACNGT 7 cut(s) 522, 1137, 1529, 1921, 3462, 3773, 3858
Bst6I CTCTTC 9 cut(s) 34, 482, 649, 1097, 2664, 2895, 2982, 3663, 3965
BstACI GRCGYC 1 cut(s) 2142
BstAUI TGTACA 1 cut(s) 1949
BstC8I GCNNGC 8 cut(s) 215, 830, 1383, 2041, 2560, 3516, 3618, 4149
BstDSI CCRYGG 1 cut(s) 1597
BstEII GGTNACC 2 cut(s) 1501, 2846
BstFNI CGCG 6 cut(s) 117, 423, 732, 1038, 1867, 3516
BstHHI GCGC 5 cut(s) 219, 834, 3516, 3518, 3746
BstMWI GCNNNNNNNGC 8 cut(s) 1555, 2036, 2559, 2690, 2743, 3617, 3626, 3752
BstNI CCWGG 9 cut(s) 105, 415, 720, 1030, 1579, 1611, 2325, 2928, 4386
BstNSI RCATGY 3 cut(s) 160, 775, 3295
BstPAI GACNNNNGTC 1 cut(s) 2872
BstPI GGTNACC 2 cut(s) 1501, 2846
BstSFI CTRYAG 2 cut(s) 1353, 3831
BstUI CGCG 6 cut(s) 117, 423, 732, 1038, 1867, 3516
BstV2I GAAGAC 5 cut(s) 135, 750, 2223, 2406, 4359
BstX2I RGATCY 2 cut(s) 3013, 3502
BstYI RGATCY 2 cut(s) 3013, 3502
BtgI CCRYGG 1 cut(s) 1597
BtrI CACGTC 3 cut(s) 171, 786, 2606
BtsI GCAGTG 3 cut(s) 2067, 4060, 4158
BtuMI TCGCGA 2 cut(s) 117, 732
BveI ACCTGC 3 cut(s) 593, 1208, 4383
Cac8I GCNNGC 8 cut(s) 215, 830, 1383, 2041, 2560, 3516, 3618, 4149
CaiI CAGNNNCTG 2 cut(s) 2933, 3830
CciI TCATGA 2 cut(s) 3421, 4477
CfoI GCGC 5 cut(s) 219, 834, 3516, 3518, 3746
Cfr13I GGNCC 6 cut(s) 75, 690, 1670, 3569, 3649, 4232
Cfr9I CCCGGG 1 cut(s) 2393
CseI GACGC 1 cut(s) 2187
CsiI ACCWGGT 2 cut(s) 103, 718
Csp6I GTAC 9 cut(s) 476, 1091, 1290, 1337, 1836, 1950, 2502, 4002, 4280
CspCI CAANNNNNGTGG 4 cut(s) 216, 251, 831, 866
CviQI GTAC 9 cut(s) 476, 1091, 1290, 1337, 1836, 1950, 2502, 4002, 4280
DraI TTTAAA 1 cut(s) 3912
DriI GACNNNNNGTC 1 cut(s) 4305
EaeI YGGCCR 5 cut(s) 237, 852, 2041, 2857, 4145
Eam1104I CTCTTC 9 cut(s) 34, 482, 649, 1097, 2664, 2895, 2982, 3663, 3965
Eam1105I GACNNNNNGTC 1 cut(s) 4305
EarI CTCTTC 9 cut(s) 34, 482, 649, 1097, 2664, 2895, 2982, 3663, 3965
Eco130I CCWWGG 4 cut(s) 184, 799, 1597, 2404
Eco147I AGGCCT 3 cut(s) 1558, 1609, 2597
Eco24I GRGCYC 1 cut(s) 1864
Eco31I GGTCTC 6 cut(s) 395, 1010, 2041, 2466, 3436, 3665
Eco32I GATATC 2 cut(s) 1941, 4248
Eco47I GGWCC 3 cut(s) 75, 690, 3649
Eco57I CTGAAG 3 cut(s) 2217, 3673, 3876
Eco88I CYCGRG 1 cut(s) 2393
Eco91I GGTNACC 2 cut(s) 1501, 2846
EcoO109I RGGNCCY 2 cut(s) 75, 690
EcoO65I GGTNACC 2 cut(s) 1501, 2846
EcoRI GAATTC 1 cut(s) 3115
EcoRII CCWGG 9 cut(s) 103, 413, 718, 1028, 1577, 1609, 2323, 2926, 4384
EcoRV GATATC 2 cut(s) 1941, 4248
EcoT14I CCWWGG 4 cut(s) 184, 799, 1597, 2404
EcoT22I ATGCAT 2 cut(s) 1852, 3031
EcoT38I GRGCYC 1 cut(s) 1864
ErhI CCWWGG 4 cut(s) 184, 799, 1597, 2404
FalI AAGNNNNNCTT 2 cut(s) 2209, 2241
FauI CCCGC 1 cut(s) 2072
FauNDI CATATG 2 cut(s) 3031, 3790
FriOI GRGCYC 1 cut(s) 1864
GlaI GCGC 5 cut(s) 218, 833, 3515, 3517, 3745
GsaI CCCAGC 2 cut(s) 1676, 3114
GsuI CTGGAG 4 cut(s) 1632, 2704, 2802, 3338
HapII CCGG 8 cut(s) 362, 977, 1964, 2187, 2394, 3152, 3239, 3675
HgaI GACGC 1 cut(s) 2187
HhaI GCGC 5 cut(s) 219, 834, 3516, 3518, 3746
Hin1I GRCGYC 1 cut(s) 2142
Hin6I GCGC 5 cut(s) 217, 832, 3514, 3516, 3744
HinP1I GCGC 5 cut(s) 217, 832, 3514, 3516, 3744
HpaII CCGG 8 cut(s) 362, 977, 1964, 2187, 2394, 3152, 3239, 3675
HphI GGTGA 8 cut(s) 297, 912, 1513, 1780, 3785, 3976, 4181, 4364
HpyAV CCTTC 8 cut(s) 376, 991, 1687, 1725, 2725, 3164, 3806, 4284
HpyCH4III ACNGT 7 cut(s) 522, 1137, 1529, 1921, 3462, 3773, 3858
HpyCH4IV ACGT 5 cut(s) 170, 785, 1414, 2142, 2605
HpyF10VI GCNNNNNNNGC 8 cut(s) 1555, 2036, 2559, 2690, 2743, 3617, 3626, 3752
HpySE526I ACGT 5 cut(s) 170, 785, 1414, 2142, 2605
Hsp92I GRCGYC 1 cut(s) 2142
HspAI GCGC 5 cut(s) 217, 832, 3514, 3516, 3744
KflI GGGWCCC 2 cut(s) 75, 690
Kpn2I TCCGGA 1 cut(s) 3238
LguI GCTCTTC 1 cut(s) 2664
LmnI GCTCC 6 cut(s) 1625, 1867, 1976, 2395, 2743, 3842
LweI GCATC 8 cut(s) 1536, 1859, 2144, 2758, 3016, 3043, 3644, 4333
MabI ACCWGGT 2 cut(s) 103, 718
MaeII ACGT 5 cut(s) 170, 785, 1414, 2142, 2605
MfeI CAATTG 2 cut(s) 1515, 2094
MflI RGATCY 2 cut(s) 3013, 3502
MhlI GDGCHC 3 cut(s) 249, 864, 1864
MlsI TGGCCA 2 cut(s) 2043, 2859
MluI ACGCGT 2 cut(s) 421, 1036
MluNI TGGCCA 2 cut(s) 2043, 2859
MlyI GAGTC 8 cut(s) 598, 1213, 1586, 1623, 2267, 2809, 2958, 4201
MmeI TCCRAC 7 cut(s) 1612, 1618, 1626, 1954, 3459, 3514, 4289
Mox20I TGGCCA 2 cut(s) 2043, 2859
Mph1103I ATGCAT 2 cut(s) 1852, 3031
MroI TCCGGA 1 cut(s) 3238
MroXI GAANNNNTTC 2 cut(s) 3309, 3592
MscI TGGCCA 2 cut(s) 2043, 2859
MslI CAYNNNNRTG 2 cut(s) 3300, 3663
Msp20I TGGCCA 2 cut(s) 2043, 2859
MspA1I CMGCKG 3 cut(s) 1880, 2237, 2515
MspI CCGG 8 cut(s) 362, 977, 1964, 2187, 2394, 3152, 3239, 3675
MunI CAATTG 2 cut(s) 1515, 2094
Mva1269I GAATGC 1 cut(s) 1852
MvaI CCWGG 9 cut(s) 105, 415, 720, 1030, 1579, 1611, 2325, 2928, 4386
MvnI CGCG 6 cut(s) 117, 423, 732, 1038, 1867, 3516
MwoI GCNNNNNNNGC 8 cut(s) 1555, 2036, 2559, 2690, 2743, 3617, 3626, 3752
NciI CCSGG 4 cut(s) 1964, 2187, 2394, 2395
NcoI CCATGG 1 cut(s) 1597
NdeI CATATG 2 cut(s) 3031, 3790
NmuCI GTSAC 7 cut(s) 193, 808, 1501, 1615, 2143, 2153, 2809
NruI TCGCGA 2 cut(s) 117, 732
NsiI ATGCAT 2 cut(s) 1852, 3031
NspI RCATGY 3 cut(s) 160, 775, 3295
PagI TCATGA 2 cut(s) 3421, 4477
PaqCI CACCTGC 3 cut(s) 593, 1208, 4383
PauI GCGCGC 1 cut(s) 3514
PceI AGGCCT 3 cut(s) 1558, 1609, 2597
PciI ACATGT 2 cut(s) 156, 771
PciSI GCTCTTC 1 cut(s) 2664
PcsI WCGNNNNNNNCGW 1 cut(s) 1864
PctI GAATGC 1 cut(s) 1852
PdmI GAANNNNTTC 2 cut(s) 3309, 3592
PflFI GACNNNGTC 1 cut(s) 2458
PflMI CCANNNNNTGG 4 cut(s) 1520, 2753, 2933, 4289
PleI GAGTC 8 cut(s) 597, 1212, 1586, 1622, 2266, 2809, 2958, 4201
PpsI GAGTC 8 cut(s) 597, 1212, 1586, 1622, 2266, 2809, 2958, 4201
PpuMI RGGWCCY 2 cut(s) 75, 690
PscI ACATGT 2 cut(s) 156, 771
PshAI GACNNNNGTC 1 cut(s) 2872
PshBI ATTAAT 3 cut(s) 2625, 2921, 2978
Psp5II RGGWCCY 2 cut(s) 75, 690
Psp6I CCWGG 9 cut(s) 103, 413, 718, 1028, 1577, 1609, 2323, 2926, 4384
PspEI GGTNACC 2 cut(s) 1501, 2846
PspFI CCCAGC 2 cut(s) 1672, 3110
PspGI CCWGG 9 cut(s) 103, 413, 718, 1028, 1577, 1609, 2323, 2926, 4384
PspPI GGNCC 6 cut(s) 75, 690, 1670, 3569, 3649, 4232
PspPPI RGGWCCY 2 cut(s) 75, 690
PstNI CAGNNNCTG 2 cut(s) 2933, 3830
PsuI RGATCY 2 cut(s) 3013, 3502
PsyI GACNNNGTC 1 cut(s) 2458
PteI GCGCGC 1 cut(s) 3514
PvuII CAGCTG 3 cut(s) 1880, 2237, 2515
RruI TCGCGA 2 cut(s) 117, 732
RsaI GTAC 9 cut(s) 477, 1092, 1291, 1338, 1837, 1951, 2503, 4003, 4281
RsaNI GTAC 9 cut(s) 476, 1091, 1290, 1337, 1836, 1950, 2502, 4002, 4280
RseI CAYNNNNRTG 2 cut(s) 3300, 3663
SapI GCTCTTC 1 cut(s) 2664
Sau96I GGNCC 6 cut(s) 75, 690, 1670, 3569, 3649, 4232
ScaI AGTACT 1 cut(s) 4003
SchI GAGTC 8 cut(s) 598, 1213, 1586, 1623, 2267, 2809, 2958, 4201
SduI GDGCHC 3 cut(s) 249, 864, 1864
SexAI ACCWGGT 2 cut(s) 103, 718
SfaNI GCATC 8 cut(s) 1536, 1859, 2144, 2758, 3016, 3043, 3644, 4333
SfcI CTRYAG 2 cut(s) 1353, 3831
SinI GGWCC 3 cut(s) 75, 690, 3649
SmaI CCCGGG 1 cut(s) 2395
SmiMI CAYNNNNRTG 2 cut(s) 3300, 3663
SmlI CTYRAG 3 cut(s) 617, 1232, 3090
SmoI CTYRAG 3 cut(s) 617, 1232, 3090
SseBI AGGCCT 3 cut(s) 1558, 1609, 2597
SsiI CCGC 6 cut(s) 240, 855, 1397, 1865, 2065, 3567
SspI AATATT 2 cut(s) 2335, 4453
StuI AGGCCT 3 cut(s) 1558, 1609, 2597
StyI CCWWGG 4 cut(s) 184, 799, 1597, 2404
TaaI ACNGT 7 cut(s) 522, 1137, 1529, 1921, 3462, 3773, 3858
TaiI ACGT 5 cut(s) 173, 788, 1417, 2145, 2608
TaqI TCGA 7 cut(s) 222, 837, 1912, 2453, 2590, 2876, 4362
TaqII GACCGA 3 cut(s) 537, 1152, 3666
TatI WGTACW 3 cut(s) 1835, 1949, 4001
TauI GCSGC 3 cut(s) 242, 857, 3570
TseFI GTSAC 7 cut(s) 193, 808, 1501, 1615, 2143, 2153, 2809
Tsp45I GTSAC 7 cut(s) 193, 808, 1501, 1615, 2143, 2153, 2809
TspGWI ACGGA 6 cut(s) 309, 924, 1562, 1665, 1670, 3655
TspMI CCCGGG 1 cut(s) 2393
Tth111I GACNNNGTC 1 cut(s) 2458
Van91I CCANNNNNTGG 4 cut(s) 1520, 2753, 2933, 4289
VpaK11BI GGWCC 3 cut(s) 75, 690, 3649
VspI ATTAAT 3 cut(s) 2625, 2921, 2978
XapI RAATTY 9 cut(s) 1264, 2083, 2340, 2882, 2946, 3115, 4018, 4039, 4497
XbaI TCTAGA 2 cut(s) 3505, 4118
XceI RCATGY 3 cut(s) 160, 775, 3295
XcmI CCANNNNNNNNNTGG 2 cut(s) 2867, 3604
XmaI CCCGGG 1 cut(s) 2393
XmnI GAANNNNTTC 2 cut(s) 3309, 3592
ZraI GACGTC 1 cut(s) 2143
ZrmI AGTACT 1 cut(s) 4003
Zsp2I ATGCAT 2 cut(s) 1852, 3031
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.