Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000493.1

Orthogroup ID

OG0009003

Physical Location & Seq

Genomic Coordinates Forward (+)

101 .. 2621

Gene Structure 2521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1344 bp

atgcagattgaggatcatgaacttgcagatgttgctgcagttagtgcaggcaatgattatacagtggggaacatgatttacaatgctctttgtcaagtaggaaagaagggtgtaattactattgaaaaagggaagtctacggaaaacactcttcaaattgtagaaggaatgcagtttgatcgtggatacttatctccttactttgtcactgatcgacaaaaaatgatagtggagtttcaagagtgtaagttgcttttggttgacgaaaaaattacacacccggaggagctgtttaagatattggacaatgcagtgaaagagaagtatccaattgtgatagttgccgaggggattgagcaggaagctttaactccagtaataagaaacaagctcagaggtgcactgaaagcagtcgccattaaggcgcctgccttcggtgaacgcaaaagccactacttagacgacattgccattttgaccggagcaacagttgtaagagaagagatgggaatgattttacataagactggcccggaggtattggggactgctactaaggttgtgataacaaaggactctacactgatagttactgatggaagcactcgagaagctgttgaaaagagggtttctcagatacaaaggcttgttgagaacactaaagaagaatttcaaaagaagatattaaatgaaagaataggaagattatcaggggggattgctattctgcaggtaggagcacaaacgcaagttgagttgaaggataaacaactcagaattgaagatgctttgaatgcaaccaaggcagcaattgaggaaggtgttgtagttggtggtggctgctgccttttgaggctctctaaaaaggtggatgccatcaaagaacttttggaaaatgaagaacagaagattggagcggaaatattcaagaaagctctaagctatcctgcaaaactgatagctaaaaatgcaggtgtaaatggcagtgttgtagtagagaaggttctatcaaatgctgatatggggtacggatataatgctgcaagagactgttatgaggacctaatgaaagctgggattatggatccatcaaaggttgttagatgttgtttggagcatgctgcatcagtcgcaaaaacttttctgttgtctgatgctgttgtcgtcgagattaaggaattgaatcccatcccaagaagaatgccaaggcgaaggccaaagccaccccttccccccatgccccaaatgccacagatgccgccaatgtcacccatgccgccaatgccaccaatgtccatgccaacctcaggtgctccatcatttggttccaagtatggcagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006457 GO:0006458 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044183 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051082 GO:0061077

KEGG Pathways

Metabolic & Signaling

ko03018 ko04212 ko04940 ko05134 ko05152 map03018 map04212 map04940 map05134 map05152

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

447

Amino Acids

49.07

Weight (kDa)

8.28

Isoelectric Point (pI)

43.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cpn60_TCP1	PF00118	4 - 390	2.2e-49	TCP-1/cpn60 chaperonin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26230 AT1G26230 AT1G26230 AT1G26230 AT1G26230
fragaria_vesca	FvH4_4g28740 FvH4_4g28740
malus_domestica	MD13G1053600.v1.1
prunus_persica	Prupe.1G298500_v2.0.a1 Prupe.1G298500_v2.0.a1
pyrus_communis	pycom13g04780
rosa_chinensis	RchiOBHm_Chr4g0436871
rosa_laevigata	RLG00000006490
rosa_multiflora	Rmu_ssc0000493.1_g000001
rosa_roxburghii	Rroxscaffold_5G00377930
rosa_rugosa	Rorug04G0296700 Rorug04G0296800
rosa_samantha	Rh4AG351100 Rh4BG360100 Rh4CG374400 Rh4DG354200
rosa_wichuraiana	Rw4G030740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	962
Acc36I	ACCTGC	2 cut(s)	721, 962
AccB1I	GGYRCC	1 cut(s)	424
AccB7I	CCANNNNNTGG	1 cut(s)	1322
AccBSI	CCGCTC	1 cut(s)	917
AccI	GTMKAC	1 cut(s)	137
AciI	CCGC	3 cut(s)	917, 1259, 1277
AclWI	GGATC	3 cut(s)	21, 1079, 1092
AcsI	RAATTY	1 cut(s)	668
AcyI	GRCGYC	1 cut(s)	425
AfaI	GTAC	1 cut(s)	1028
AfiI	CCNNNNNNNGG	3 cut(s)	434, 1307, 1322
AjuI	GAANNNNNNNTTGG	2 cut(s)	894, 926
AluBI	AGCT	8 cut(s)	289, 365, 391, 614, 935, 942, 962, 1073
AluI	AGCT	8 cut(s)	289, 365, 391, 614, 935, 942, 962, 1073
Alw21I	GWGCWC	3 cut(s)	403, 742, 1315
Alw26I	GTCTC	1 cut(s)	1041
Alw44I	GTGCAC	1 cut(s)	399
AlwI	GGATC	3 cut(s)	21, 1079, 1092
Ama87I	CYCGRG	1 cut(s)	606
AoxI	GGCC	2 cut(s)	529, 1214
ApaLI	GTGCAC	1 cut(s)	399
ApeKI	GCWGC	6 cut(s)	35, 806, 840, 843, 1040, 1121
ApoI	RAATTY	1 cut(s)	668
Asp700I	GAANNNNTTC	1 cut(s)	669
AspLEI	GCGC	1 cut(s)	427
AspS9I	GGNCC	2 cut(s)	530, 1060
AsuC2I	CCSGG	2 cut(s)	281, 533
AsuHPI	GGTGA	2 cut(s)	449, 1260
AvaI	CYCGRG	1 cut(s)	606
AvaII	GGWCC	1 cut(s)	1060
AxyI	CCTNAGG	1 cut(s)	1306
BaeGI	GKGCMC	1 cut(s)	403
BamHI	GGATCC	1 cut(s)	1084
BanI	GGYRCC	1 cut(s)	424
Bbv12I	GWGCWC	3 cut(s)	403, 742, 1315
BbvI	GCAGC	6 cut(s)	22, 818, 827, 830, 1027, 1108
BccI	CCATC	6 cut(s)	499, 590, 884, 1096, 1196, 1324
BcgI	CGANNNNNNTGC	2 cut(s)	161, 195
BciVI	GTATCC	2 cut(s)	179, 336
BcnI	CCSGG	2 cut(s)	281, 533
BcoDI	GTCTC	1 cut(s)	1041
BfmI	CTRYAG	2 cut(s)	36, 728
BfoI	RGCGCY	1 cut(s)	428
BfuAI	ACCTGC	2 cut(s)	721, 962
BfuI	GTATCC	2 cut(s)	179, 336
BglI	GCCNNNNNGGC	1 cut(s)	422
BisI	GCNGC	8 cut(s)	36, 807, 841, 844, 1041, 1122, 1259, 1277
BlsI	GCNGC	8 cut(s)	37, 808, 842, 845, 1042, 1123, 1260, 1278
Bme1390I	CCNGG	2 cut(s)	281, 533
Bme18I	GGWCC	1 cut(s)	1060
BmeT110I	CYCGRG	1 cut(s)	606
BmgT120I	GGNCC	2 cut(s)	530, 1060
BmiI	GGNNCC	3 cut(s)	426, 1086, 1327
BmrFI	CCNGG	2 cut(s)	281, 533
BmsI	GCATC	5 cut(s)	775, 862, 1133, 1144, 1245
BplI	GAGNNNNNCTC	2 cut(s)	616, 648
BpmI	CTGGAG	1 cut(s)	357
BpuMI	CCSGG	2 cut(s)	281, 533
BsaBI	GATNNNNATC	1 cut(s)	190
BsaHI	GRCGYC	1 cut(s)	425
BsaJI	CCNNGG	3 cut(s)	345, 801, 1205
BsaWI	WCCGGW	1 cut(s)	479
BsaXI	ACNNNNNCTCC	4 cut(s)	275, 305, 474, 504
Bsc4I	CCNNNNNNNGG	3 cut(s)	434, 1307, 1322
Bse1I	ACTGG	2 cut(s)	374, 532
Bse21I	CCTNAGG	1 cut(s)	1306
Bse3DI	GCAATG	2 cut(s)	58, 465
Bse8I	GATNNNNATC	1 cut(s)	190
BseDI	CCNNGG	3 cut(s)	345, 801, 1205
BseGI	GGATG	2 cut(s)	877, 1188
BseJI	GATNNNNATC	1 cut(s)	190
BseLI	CCNNNNNNNGG	3 cut(s)	434, 1307, 1322
BseMI	GCAATG	2 cut(s)	58, 465
BseMII	CTCAG	4 cut(s)	406, 647, 787, 1320
BseNI	ACTGG	2 cut(s)	374, 532
BseRI	GAGGAG	1 cut(s)	299
BseSI	GKGCMC	1 cut(s)	403
BseXI	GCAGC	6 cut(s)	22, 818, 827, 830, 1027, 1108
BseYI	CCCAGC	1 cut(s)	1073
BsgI	GTGCAG	1 cut(s)	66
BshFI	GGCC	2 cut(s)	531, 1216
BshNI	GGYRCC	1 cut(s)	424
BsiHKAI	GWGCWC	3 cut(s)	403, 742, 1315
BsiHKCI	CYCGRG	1 cut(s)	606
BsiSI	CCGG	3 cut(s)	281, 480, 533
BslFI	GGGAC	1 cut(s)	559
BslI	CCNNNNNNNGG	3 cut(s)	434, 1307, 1322
BsmAI	GTCTC	1 cut(s)	1041
BsmFI	GGGAC	1 cut(s)	559
BsmI	GAATGC	3 cut(s)	174, 799, 1206
BsnI	GGCC	2 cut(s)	531, 1216
BsoBI	CYCGRG	1 cut(s)	606
Bsp1286I	GDGCHC	3 cut(s)	403, 742, 1315
Bsp143I	GATC	4 cut(s)	13, 178, 211, 1084
BspACI	CCGC	3 cut(s)	917, 1259, 1277
BspANI	GGCC	2 cut(s)	531, 1216
BspCNI	CTCAG	4 cut(s)	405, 646, 786, 1319
BspHI	TCATGA	1 cut(s)	16
BspLI	GGNNCC	3 cut(s)	426, 1086, 1327
BspMAI	CTGCAG	2 cut(s)	40, 732
BspMI	ACCTGC	2 cut(s)	721, 962
BspPI	GGATC	3 cut(s)	21, 1079, 1092
BspT107I	GGYRCC	1 cut(s)	424
BsrBI	CCGCTC	1 cut(s)	917
BsrDI	GCAATG	2 cut(s)	58, 465
BsrI	ACTGG	2 cut(s)	374, 532
BssECI	CCNNGG	3 cut(s)	345, 801, 1205
BssMI	GATC	4 cut(s)	13, 178, 211, 1084
BssNI	GRCGYC	1 cut(s)	425
BssT1I	CCWWGG	2 cut(s)	801, 1205
Bst4CI	ACNGT	3 cut(s)	64, 490, 1052
Bst6I	CTCTTC	2 cut(s)	156, 495
BstACI	GRCGYC	1 cut(s)	425
BstAPI	GCANNNNNTGC	2 cut(s)	32, 44
BstC8I	GCNNGC	3 cut(s)	49, 429, 1119
BstDEI	CTNAG	7 cut(s)	392, 457, 555, 633, 773, 938, 1306
BstF5I	GGATG	2 cut(s)	877, 1188
BstH2I	RGCGCY	1 cut(s)	428
BstHHI	GCGC	1 cut(s)	427
BstKTI	GATC	4 cut(s)	16, 181, 214, 1087
BstMAI	GTCTC	1 cut(s)	1041
BstMBI	GATC	4 cut(s)	13, 178, 211, 1084
BstNSI	RCATGY	1 cut(s)	1121
BstSCI	CCNGG	2 cut(s)	279, 531
BstSFI	CTRYAG	2 cut(s)	36, 728
BstSLI	GKGCMC	1 cut(s)	403
BstV1I	GCAGC	6 cut(s)	22, 818, 827, 830, 1027, 1108
BstX2I	RGATCY	1 cut(s)	1084
BstYI	RGATCY	1 cut(s)	1084
Bsu36I	CCTNAGG	1 cut(s)	1306
BsuI	GTATCC	2 cut(s)	179, 336
BsuRI	GGCC	2 cut(s)	531, 1216
BtsCI	GGATG	2 cut(s)	877, 1188
BtsI	GCAGTG	2 cut(s)	318, 991
BtsIMutI	CAGTG	6 cut(s)	69, 207, 318, 401, 581, 991
BveI	ACCTGC	2 cut(s)	721, 962
Cac8I	GCNNGC	3 cut(s)	49, 429, 1119
CciI	TCATGA	1 cut(s)	16
CfoI	GCGC	1 cut(s)	427
Cfr13I	GGNCC	2 cut(s)	530, 1060
Csp6I	GTAC	1 cut(s)	1027
CviAII	CATG	6 cut(s)	17, 73, 1118, 1237, 1273, 1297
CviQI	GTAC	1 cut(s)	1027
DdeI	CTNAG	7 cut(s)	392, 457, 555, 633, 773, 938, 1306
DinI	GGCGCC	1 cut(s)	426
DpnI	GATC	4 cut(s)	15, 180, 213, 1086
DpnII	GATC	4 cut(s)	13, 178, 211, 1084
Eam1104I	CTCTTC	2 cut(s)	156, 495
EarI	CTCTTC	2 cut(s)	156, 495
Eco130I	CCWWGG	2 cut(s)	801, 1205
Eco47I	GGWCC	1 cut(s)	1060
Eco81I	CCTNAGG	1 cut(s)	1306
Eco88I	CYCGRG	1 cut(s)	606
EcoO109I	RGGNCCY	1 cut(s)	1060
EcoT14I	CCWWGG	2 cut(s)	801, 1205
EgeI	GGCGCC	1 cut(s)	426
EheI	GGCGCC	1 cut(s)	426
ErhI	CCWWGG	2 cut(s)	801, 1205
FaeI	CATG	6 cut(s)	20, 76, 1121, 1240, 1276, 1300
FaqI	GGGAC	1 cut(s)	559
FatI	CATG	6 cut(s)	16, 72, 1117, 1236, 1272, 1296
FblI	GTMKAC	1 cut(s)	137
Fnu4HI	GCNGC	8 cut(s)	36, 807, 841, 844, 1041, 1122, 1259, 1277
FokI	GGATG	2 cut(s)	884, 1175
Fsp4HI	GCNGC	8 cut(s)	36, 807, 841, 844, 1041, 1122, 1259, 1277
GlaI	GCGC	1 cut(s)	426
GluI	GCNGC	8 cut(s)	36, 807, 841, 844, 1041, 1122, 1259, 1277
GsaI	CCCAGC	1 cut(s)	1077
GsuI	CTGGAG	1 cut(s)	357
HaeII	RGCGCY	1 cut(s)	428
HaeIII	GGCC	2 cut(s)	531, 1216
HapII	CCGG	3 cut(s)	281, 480, 533
HhaI	GCGC	1 cut(s)	427
Hin1I	GRCGYC	1 cut(s)	425
Hin1II	CATG	6 cut(s)	20, 76, 1121, 1240, 1276, 1300
Hin6I	GCGC	1 cut(s)	425
HinP1I	GCGC	1 cut(s)	425
HincII	GTYRAC	1 cut(s)	262
HindII	GTYRAC	1 cut(s)	262
HindIII	AAGCTT	1 cut(s)	363
HinfI	GANTC	2 cut(s)	575, 1183
HpaII	CCGG	3 cut(s)	281, 480, 533
HphI	GGTGA	2 cut(s)	449, 1260
Hpy166II	GTNNAC	4 cut(s)	138, 262, 401, 440
Hpy188I	TCNGA	4 cut(s)	395, 636, 776, 1153
Hpy188III	TCNNGA	5 cut(s)	17, 239, 608, 928, 1168
Hpy8I	GTNNAC	4 cut(s)	138, 262, 401, 440
Hpy99I	CGWCG	1 cut(s)	1169
HpyAV	CCTTC	8 cut(s)	100, 158, 442, 754, 812, 994, 1206, 1238
HpyCH4III	ACNGT	3 cut(s)	64, 490, 1052
HpyF3I	CTNAG	7 cut(s)	392, 457, 555, 633, 773, 938, 1306
Hsp92I	GRCGYC	1 cut(s)	425
Hsp92II	CATG	6 cut(s)	20, 76, 1121, 1240, 1276, 1300
HspAI	GCGC	1 cut(s)	425
KasI	GGCGCC	1 cut(s)	424
Kzo9I	GATC	4 cut(s)	13, 178, 211, 1084
LmnI	GCTCC	6 cut(s)	286, 482, 737, 914, 1114, 1318
Lsp1109I	GCAGC	6 cut(s)	22, 818, 827, 830, 1027, 1108
LweI	GCATC	5 cut(s)	775, 862, 1133, 1144, 1245
MaeIII	GTNAC	3 cut(s)	205, 589, 1266
MalI	GATC	4 cut(s)	15, 180, 213, 1086
MbiI	CCGCTC	1 cut(s)	917
MboI	GATC	4 cut(s)	13, 178, 211, 1084
MboII	GAAGA	9 cut(s)	143, 512, 677, 691, 714, 794, 911, 919, 1209
MfeI	CAATTG	2 cut(s)	330, 810
MflI	RGATCY	1 cut(s)	1084
MhlI	GDGCHC	3 cut(s)	403, 742, 1315
MluCI	AATT	8 cut(s)	114, 156, 270, 330, 668, 777, 810, 1178
Mly113I	GGCGCC	1 cut(s)	425
MlyI	GAGTC	1 cut(s)	569
MroXI	GAANNNNTTC	1 cut(s)	669
MseI	TTAA	5 cut(s)	294, 368, 420, 686, 1173
MspI	CCGG	3 cut(s)	281, 480, 533
MspR9I	CCNGG	2 cut(s)	281, 533
MunI	CAATTG	2 cut(s)	330, 810
Mva1269I	GAATGC	3 cut(s)	174, 799, 1206
NarI	GGCGCC	1 cut(s)	425
NciI	CCSGG	2 cut(s)	281, 533
NdeII	GATC	4 cut(s)	13, 178, 211, 1084
NlaIII	CATG	6 cut(s)	20, 76, 1121, 1240, 1276, 1300
NlaIV	GGNNCC	3 cut(s)	426, 1086, 1327
NmeAIII	GCCGAG	1 cut(s)	370
NmuCI	GTSAC	2 cut(s)	205, 1266
NspI	RCATGY	1 cut(s)	1121
PaeI	GCATGC	1 cut(s)	1121
PaeR7I	CTCGAG	1 cut(s)	606
PagI	TCATGA	1 cut(s)	16
PaqCI	CACCTGC	1 cut(s)	962
PctI	GAATGC	3 cut(s)	174, 799, 1206
PdmI	GAANNNNTTC	1 cut(s)	669
PfeI	GAWTC	1 cut(s)	1183
PflMI	CCANNNNNTGG	1 cut(s)	1322
PkrI	GCNGC	8 cut(s)	37, 808, 842, 845, 1042, 1123, 1260, 1278
PleI	GAGTC	1 cut(s)	569
PluTI	GGCGCC	1 cut(s)	428
PpsI	GAGTC	1 cut(s)	569
PpuMI	RGGWCCY	1 cut(s)	1060
Psp5II	RGGWCCY	1 cut(s)	1060
PspFI	CCCAGC	1 cut(s)	1073
PspN4I	GGNNCC	3 cut(s)	426, 1086, 1327
PspPI	GGNCC	2 cut(s)	530, 1060
PspPPI	RGGWCCY	1 cut(s)	1060
PsrI	GAACNNNNNNTAC	4 cut(s)	62, 94, 987, 1019
PstI	CTGCAG	2 cut(s)	40, 732
PsuI	RGATCY	1 cut(s)	1084
RsaI	GTAC	1 cut(s)	1028
RsaNI	GTAC	1 cut(s)	1027
SaqAI	TTAA	5 cut(s)	294, 368, 420, 686, 1173
SatI	GCNGC	8 cut(s)	36, 807, 841, 844, 1041, 1122, 1259, 1277
Sau3AI	GATC	4 cut(s)	13, 178, 211, 1084
Sau96I	GGNCC	2 cut(s)	530, 1060
SchI	GAGTC	1 cut(s)	569
ScrFI	CCNGG	2 cut(s)	281, 533
SduI	GDGCHC	3 cut(s)	403, 742, 1315
SfaNI	GCATC	5 cut(s)	775, 862, 1133, 1144, 1245
SfcI	CTRYAG	2 cut(s)	36, 728
SfoI	GGCGCC	1 cut(s)	426
Sfr274I	CTCGAG	1 cut(s)	606
SinI	GGWCC	1 cut(s)	1060
SlaI	CTCGAG	1 cut(s)	606
SmlI	CTYRAG	1 cut(s)	606
SmoI	CTYRAG	1 cut(s)	606
SphI	GCATGC	1 cut(s)	1121
Sse9I	AATT	8 cut(s)	114, 156, 270, 330, 668, 777, 810, 1178
SsiI	CCGC	3 cut(s)	917, 1259, 1277
SspDI	GGCGCC	1 cut(s)	424
SspI	AATATT	1 cut(s)	924
StyD4I	CCNGG	2 cut(s)	279, 531
StyI	CCWWGG	2 cut(s)	801, 1205
TaaI	ACNGT	3 cut(s)	64, 490, 1052
TaqI	TCGA	3 cut(s)	214, 607, 1167
TasI	AATT	8 cut(s)	114, 156, 270, 330, 668, 777, 810, 1178
TauI	GCSGC	2 cut(s)	1261, 1279
TfiI	GAWTC	1 cut(s)	1183
Tru1I	TTAA	5 cut(s)	294, 368, 420, 686, 1173
Tru9I	TTAA	5 cut(s)	294, 368, 420, 686, 1173
TscAI	CASTG	6 cut(s)	69, 214, 318, 408, 588, 991
TseFI	GTSAC	2 cut(s)	205, 1266
TseI	GCWGC	6 cut(s)	35, 806, 840, 843, 1040, 1121
Tsp45I	GTSAC	2 cut(s)	205, 1266
TspDTI	ATGAA	4 cut(s)	33, 705, 912, 1082
TspGWI	ACGGA	2 cut(s)	155, 1044
TspRI	CASTG	6 cut(s)	69, 214, 318, 408, 588, 991
Van91I	CCANNNNNTGG	1 cut(s)	1322
VneI	GTGCAC	1 cut(s)	399
VpaK11BI	GGWCC	1 cut(s)	1060
XapI	RAATTY	1 cut(s)	668
XceI	RCATGY	1 cut(s)	1121
XhoI	CTCGAG	1 cut(s)	606
XmiI	GTMKAC	1 cut(s)	137
XmnI	GAANNNNTTC	1 cut(s)	669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.