Rorug04G0296800
TCP Family

Belongs to the chaperonin (HSP60) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0009003
Physical Location & Seq
Forward (+)
47115342 .. 47149590
34249 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0296800.1

Sequence Viewer

Length: 12462 bp
ATGTTCGAAGCACACGTCCTCCATTTGCTTAGAAGATATTTGGGGGAATATGTTGAAGGACTCTCTGTCGAAGCTTTAAGAATAAGTGTTTGGCAAGGTGATGTTGTTCTCAAAGATTTGAAATTAAAGGCAGAGGCCCTAAATTCACTAAAACTTCCAGTCACTGTAAAAGCTGGTTTTATTGGTACCATTACATTAAAGGTTCCATGGAAAAGTTTGGGCAAAGAACCTGTGATTGTTCTCATTGACCGTGTATTCATCCTTGCTCATCCTGTTACTGATGACAGGACTCTCAAGGAGGACAGAGACAAACTATTTGAAGCTAAACTTCAAGAGATTGAGGAAGCAGAGTCAGCAACTCTTGAAGCAATATCAAAGTCAAAGATAGGAAGTCAATCTAATGGAAATTCATGGCTAGGTTCCCTTATTGCTACTATTATTGGGAATCTAAAGATATCAATTAGCAATGTACATATAAGATATGAGGATTCGGTCAGTAATCCAGGACATCCCTTTTGTTCGGGTGCCACTTTAGCCAAACTTGCTGCTGTTACAATGGATGAGGAAGGGAATGAAACATTTGATACCAGTGGTGCTCTTGATAAGTTGCGAAAGTCATTGCAACTAGAGAGACTAGCAATGTATCATGATTCTGATAGTGTACCGTGGAAGATAGATAAGGGATGGGAGGATCTTACTCCAAAGGAATGGGTTGAGATTTTTGAAGATGGAATACGTGAACCTGTGGATGACCATGCAATGGTGTCTAAGTGGGCTATGAATCGCAAGTATTTGGTCTCACCTATAAATGGAGTTCTAAAGTATCACCGTGTAGGAAACCAAGAAAAAAATGATCCAGAGGTTCCGTTTGAGAACGCTTCCCTTGCCCTAAGTGACGTTTCCTTGACAATGACAGAGGCTCAATATTGTGATTGGATAAAACTATTGGAAGTTGTTTCCAGATACAAGAGATATGTTGAATTTTCTCATCTAAGACCAGCGCTACCAGTCTCAGGGGCTCCATATTTGTGGTGGCGTTATGCTGCTCAAGCAGGACTTCAGCAGAAGAAAATGTGTTACCGGTTCTCTTGGGACCGCATTCGGCTTCTTTGCCAGCTTCGTCGCCGTTACATTCAGTTATATGTTGGTTTCTTACAACACCTGACAAATGTTGATAATGCTGAAATTAGAGAAATTGAGAAAGATTTGGATCCTAAAGTAATTCTTCTGTGGAGGTTACTTGCACATGCAAAGGTGGAATCTGTAAAATCGAAGGAAGCGGCTGAACAGAGGATGCTCCAGAAGAAAAGCTGGTTTTCATTTAGATGGCGTACACCTGATGAATCTGCTGATGATACTTCTGAGGGATCACAGTCACCAGAAGAAAGACTGACTAAAGAGGAGTGGCAAGCAATTAATAAGTTACTGAGTTACCAGCCAGATGAAACATTGGCATCTCACTCAGGAAAGGACATGCCGAATATGATCCGGTATATGATAACTGTGTCTATTGATCGGGCTGCTGCTAGGATCATTGATATAAATCACACTGAGATTTTGTGTTGTAAATTTGAGCAACTTCAAGTGTCAACGAAGTTTAAACATAAAAGTACATACTGTGATGTGTCATTGAGATTCTATGGTCTGTATGCACCGGAAGGCTCGCTTGCTCAGAGCGTATCTAGTGAGCAGAAGGCGAATGCACTGGCTGCTAGCTTTGTATACTCTCCAGTTGGAGAGAATGTTGATTGGAGGCTTTCAGCTACCATTTCACCTTGTCATGTCACGGTTTTGATGGAAAGCTGTGATCGCTTTTTGGATTTTGTGAAAAGGAGTAATGCAGTTAGTCCTACTGTTACATTGGAAACGGCAACTGCTTTGCAGATGCAAATTGAGAAAGTGACTCGTAGAGCACAAGAGCAATTTCAAATGGTATTAGAAGAACAAAGCAGATTTGCCCTTGATATTGATTTGGATGCTCCAAAAGTAAGAGTTCCTATCAGAACCAAGGGCTCTTCCAAATGTGATAGCCATTTTCTATTGGATCTTGGTCATTTCACCCTGCAAACGAAGGATACTCAGCATGATGAACAGAAGAAGAACATGTATTCTCGTTTTTTTATAACTGGAAGAGATATTGCTGCATTTTTTACGGAATGTGGTTCCGATTGCCAAATTCGCACTTTGGAATCACCTGATTCTGATAACCACCCACTGGTTACCCCGGAAAATGTTGACAATTTCTATCCTCTCATAGATAGGTGTGGGATGGCTCTACTTGTTGATCAGATCAAAGTACCTCACCCAAGTTACCCGTCAATGCGTATTTCAATTCAAGTGCCAAACCTCGGGGTGCACTTTTCACCATCGAGATTTCAGAGACTCATGAAATTATTAAACATATTTTATGGTACTCTGGAAACTGTTGGTCAGCCTGCTGTTGATAATTTTCAAGCAGAACGTGCCCCATGGAGTCCTGCAGATCTTTACACAGATGCTAGAATTTTAGTATGGAAGGGGATTGGCAATTCTGTGGCTACATGGCAACCTTGTTTTCTTGTGTTGTCGGGGACAAATATTTTTGTTTTGGAGTCTGAGAAGTCGCAGACTTATCAGCGATACTCCAGCATGGCTGGTAGACAAGTATGTGAGGTTCCTCCTACAAGTATTGGTGGTTCACCATTTGGCCTTGCTGTGATTCACAGGGGGATGGACACTCAAAAGGCTCTGGAGTCTTCTAGTAGCTTGATTATTGAGTTCCGTGGGGAGGAGGAGAAGGTCGTTTGGTTGAAAAGACTCATACAAGCAACATATCAAGCTTCTGCTCCCCCTTCAGTTGATGTCTTGGGAGAAACAATTGATCGTGTTGCTGAGTTTGGTGAGCCTCAGACCGGCAATTCTAAAACAGCTGACCTTGTCATTAATGGGGCATTGGTGGAGACAAAGTTATCTATTTATGGAAAGATGGGTGATAAAGATGCTGAAGAACTTGATGAGACTCTGATGCTTGAGGTTCTTGCCAGTGGGGGGCAGGTTCATATGATTCTTTGGGAAGGTGACATGACACTTAAGACAAAGCTTCACTCTCTAAAAATCAAAGATGAGCTTCAAGGTCGTCTCTCTACAACCCCACAGTATTTAGCTTGTTCTGTGCTGAAGAGTGACAATTTAGTTTCATCCCCCGGCATAATTGATCCACATTGGAAAGAAATGTCTGTTTTACTTCATGAGGAGGATGATACTTTTACGGATGCTTTGCCAGATTTTATGTCTGTATCAGATGCAGGCTTTGGTTCACCAACTTCAGATACGGTTTCATGTGTAACAACTGAGGACATCAATGATGCTGCTGGCTTTGCCTCTGCTGAAGGCTTAGTCCTTGAAAAGAATCTTGTTAAGGCAAGGTGCATTTCTGCTGAGGAATTTTATGAGGCGGAGGGTAGTGACTATTCCAATTTTGTATCTCTCACCTTCTCGACTCTGAGTTCTAGTTCACCTCATTATGATGGTATTGACACACAGATGAGCATCCGTATGTCAAAACTGGAATTCTTCTGCAACAGACCTACTTTGGTCGCTTTAATTGATTTTGGCCTGGACTTAAGCTCTGTGTACAGTGAGGAAAGTACTGCAGACATTACTGAAGGTTCAGGTGACAAATCTGTGACGAACAAAGAAAAAACTGAAGAAATTGGGCGTGTCAAAGGCTTGCTGGGTTATGGTAAAGGTCGTGTAGTATTTTATTTGAACATGAACGTGGACAGTGTGACTGTGTTTCTCAACAAGGAGGATGCTTCTCTGCTTGCGACGTTTGTGCAAGAAAGTTTTGTGCTAGATCTGAAGGTCCACCCAAGTTCTCTTTCCATTGAAGGCACCCTAGGAAATTTTAGACTCCGTGATATGTCTCTTGGAGAAGATAACTGTTGGGCTTGGCTATGTGATATACGCAATCCAGACGTGGAATCCCTTATCAAGTTCAACTTTAAGTCTTACAGTGCTGAAGACGATGATTATGAAGGATATGATTATAGTTTGTGTGGTCGATTTGCTGCTGTTCGTATTGTCTTCCTTTACAGGTTTGTTCAGGAGATAACCGCATACTTTATGGAACTTGCTACCCCACATACTGAAGATGCAATCAAACTTGTTGATAAGGTTGGGGGTTTTGAGTGGCTAATTCAAAAGTATGAGATTGATGGAGCTGCCGCACTTAAGCTGGATCTGTCACTCGATACTCCAATAATCATTGTTCCCAGGAATTCAACTAGCAATGATTTCATTCAACTTGATCTGGGCCAGCTACAAGTCACAAATGAATTTAGTTGGCATGGTTCTCCAGAGAAAGATCCTTCTGCAGTCCACATTGATGTACTTCATGCTGAGATTCTGGGGATCAACATGTCTGTAGGAATCGACGGTCGCATGGGTAAATCAATGATACGAGAAGGCAAAGGATTTGATGTTTTTGTCCGGAGAAGTTTGAGGGATATCTTCAAAAAAGTCCCAACATTTTCTCTTGAAGTGAAGGTGGGCTTATTGCATTGCGTCATGTCTGACAAAGAATATAAAGTCATTCTGGATTGTGCATACACGAACTTATGTGAAGAACCAAAGCTTCCCCCTAGTTTCCGTGGTGGAATATCTGATTCAAAGGATACAATTAGGCTGCTGGTTGATAAGGTCAACATGAATAGTCAAATCCTACTATCGCGGACTGTTTCGATAGTGGCGGTTGTGGTTGATCATGCACTGTTGGAGTTGTATAATGGTATTCATGTGGAGTCTCCTTTCGCTCAAATTGCTCTTGAAGGTCTTTGGGTGTCGTATCGGATGACTTCATTGTCTGAAACAGATCTGTACATAACAATTTCAAAATTTTCTGTTGTGGACATTCGCCCTGATACAAAACCTGAAATGCGCCTTATGCTTGGATCATCCACGGATGCTTTTAAACAAGTTTCCTCTGGAAGTTTGCCTTTTTTCTTAAATAGGGGGAGCTTTAGGAGAACTGACTCTGATGCTGGATTCCATGGGGACTTACCAATATCAACAATGTTCTTAATGGACTATAGATGGCGCACATCAACCCAATTGTTTGTGGTTAGGATTCAGCAACCTAGAGTTCTAGTTGTAGCCGATTTCCTTTTGGCTGTGGGCGAGTTTTTTGTTCCTGCATTGCGGACAATAACTGGTAGGGAGGAAGTGATGGATCCTCATAATGATCCTATTGGTAAAAACAGTAGCATAGTGTTCACAGAGCCTACATACAAACAGACAGAAGATGTGGTGCATTTGTCTCCAAGTAGACAGTTAGTAGCAGATTTTTTAAGCATCGATGAATATACATATGATGGTTGCGGAAAGACCATCCATTTGAGTGAGCAAATAGATGCTGAAGAACTCCATTCAACTAGACCTCGACCAATAATTATAATTGGACGTGGAAAAAGGTTGCGGTTTATGAATGTCAAAATTGAGAATGGGTCTCTTTTGAGGAAGTATACATACTTAAATAATGATAGCAGCTACTCAGTATCCTTTGAGGATGGTGTTGACATTACGTTGCTGGAAAGTTCCTCATCTGATGAGGATAAGAAGAGTCTAGAATACTTCCATGAATCGCCAGACTCCTCAAATATTTCCTCAAATTCTGAAAGTGATCCTAATAAGATCCCAAGTTTCAGTTTTGAAACACAGGTTGTTTCTCCTGAGTTTACTTTTTATGATGGTTCAAAGTCGTCTCTGGATGATTCATATGGTGAAAAGCTTCTCCGTGCAAAGCTGGATTTTAGCTTCATGTATGCATCTAAAGAAAATGATACCTGGGTTCGAGCTCTAGTGAAGGATCTTACTGTTGAGGCTGGTTCTGGGCTTGTTGTGCTTGATCCAGTGGATATATCTGGGGGATACACTTCCGTTAAGGACAAAACAAATATGTCCTTGTTATCAACTGATATCCGCTTCCATCTATCACTAAGTGCTATATCTCTTATAAGTAATTTGCAAAGCCAGGCAACAGCTGCATTGCAATATGGAAATTCAGCACCCTTGGCTCCTTGTACCAACTTCGATCGAATTTGGGTATCCCCAAAAGAAAATGGGTCCTGTTTCAACCTTACGTTTTGGAGGCCTCGAGCACCTTCAAATTATGTTATTTTGGGAGATTGCGTGACATCAAAGCCAGTTCCTCCCTCACAGGCAGTAATGGCAGTGAGTAATACATATGGGCGTGTGTGTAAACCAACTGGTTTCAATCTCATAGGATTGTTCTCTGCAATTCAAGGATTTACGGGGGATGACTCTGATATTAATACAGATTGTTCTCTTTGGATGCCAATAGCACCACCAGGATACACAGCATTGGGTTCTGTAGCAAATATTGGGAAGGAACCCCCACCCAACCACATTGTTTATTGCATTCGTTCCGATCTTGTAACATCAACAACCTATATAGAATGCTTGTTCCGCTCTGCATCAAATCCTCAATTTGCATCTGGATTTAGCATCTGGCGTGTAGAGAATGTGCTTGGATCATTTTATGCCCATTCTTCTACTGAATGCCCTTCCCATGCCCGTTGTTGTAACCTCAATCATCTTCTTCTTTGGAACTCAAGTCGGCATCATTCTTCTGCTAAAGAACCTGCCTTAGATTTAGCTGTTGTTGAAAACTGTGAAAGTCAGGTAAGCAGAAACCAGAGTGCACATTCTTCTGGATGGGATATTGTCAGATCAAATTCAAAGGCAACTAAATGTTATATGTCTACCCCTAACTTTGAGAGAATCTGGTGGGACAAGGGTAGTGACATTCGCCGACCAGTCTCAATATGGAGACCCATTCCTCGTCAAGGCTATGCCATCTTGGGTGATTGCATTACTGAAGGCTTAGAACCACCAGCTGTTGGCATAATATTTAGAGCTGATGATCCTGAAATATCTGCGAAACCCGTGCAATTTACTAAAGTTGCCCATGTGGTAGGGAAAGGTTTTGATGAAGCTTTCTTCTGGTACCCAATTGCTCCACCAGGTTATGCTTCTCTAGGATGCATAGTCTCCAGAATAGATGAACCCCCAGGTGTAAACTCATTTTGCTGCCCTAGGATGGATCTGGTTAACCAAGCTAATATTCTTGAGGTGCCCATTTCAAGATCTTCAGCTTCAAAGGGTTCTCAGTGCTGGAGCATCTGGAGAGTTGAAAATCAGGCATGCACTTTTCTTGCACGTGGTGATCTGAAAAAACCGTCTAGCAGATTGGCTTATGCTATTGGTGACTCCATGAAACCCAAGACTAAGGAAAACATAACTGCTGAGGTGAAGCTAAGATGCTTGTCTGTAACTGTTTTAGACAGCTTGTGTGGAATGATGACCCCACTATTTGACACAACAATCACCAATATCAAACTTGCAACACATGGTCGACTAGAAGCCATGAATGCAGTACTAATTTCCTCTATTGCTGCATCAACCTTCAATACTCAGTTGGAAGCGTGGGAGCCGCTTGTGGAACCTTTTGATGGAATATTCAAGTTTGAAACATATGATTCTAATGTACACTCGCCATCAGAATTTGGGAAGACAATGCGTATTGCTGCCACAAGTATCGTTAATATAAATGTCAGCGCTGCAAATCTTGAAACTTTTGTAGGGACTATTCTGTCATGGAGAAGACAATTAGACCTTGAACAGAAAGCAAAGAAGATAAATGAGGAAGCTTGTGGTCTAAGCGGTAAAGGAGAGGACCAGACTTTGTCTGCACTGGATGATGACGACTTTCAGACTGTGATAGTAGAGAATAAACTTGGTTGCGATGTCTATCTCAAAAAAGTTGAACAAAATTCAGATATGGTGAACCAGTTGCATCATGGTGACTCTGTCTCTGTATGGGTTCCACCTCCACAGTTTTCAGACAGGTTAAATGTTGCAGATGAATCCAAGGAAGCTCGTTATTATGTTGCTATACAAATTCATGAAGCTAAGGGTTTGCCTATTACAGATGATGGTAATAGCCATAACTTCTTATGTGCTTTGAGACTTGCTGTTGATAGCCAGGCAACAGATCAACAAAAACTATTTCCTCAAAGTGCAAGGACAAAATGCGTTAAGCCTTCAGTTTCAAAAAATAGTAACCTGAATGAAGGCTCTGCAGAATGGAATGAACTTTTCATATTTGAAGTTCCTCGGAAGGGCCCAGCTAAACTGGAAGTGGAGGTGACAAACCTCGCAGCAAAAGCTGGAAAGGGTGAAGTAGTTGGTGCACTCTCATTTTCTGTCGGGCAAGATGCGAATATGTTGAGGAAGCTAGCCTCAGTGAAGGTTCTCCATCAAGGTCATGATATTCAGAATATAGTATCCTATCCGCTAAAGCGGACGGTTCAACATAACCAACTTGAAGACCCGGACGAATATGGTTGCCTGTTGGTTTCAACTTCTTATTTTGAGAGGAAAACAACTCCAAGTCTTCAAAGAGATTTGGAGAATGAGAATGTAGTTGATAGAGACATAGGTTTCTATATTGGTCTGGGCCCCAAAGGTGTTTGGCAGGGCATACGGGCGTTGCTTCCATTGTCAGTTGTTCCAAAATTGTTACAGGATGATTTTATTGCTCTGGAAGTTATGCTGAAAAATGGCAGGAAACATGCTATTTTCAGGGGTCTTGCAACAGTTGTAAATGAGACTGATGTTACATTGAAACTTTCAGTATGTGGTGCTTCTCTGATTCAAGTTTATGATTCCTCATCTGGAACAAGTGGAAACATAAATCGCCCTAGGAATGATGTCTCTGCCATAAACCCTGGAGGTTCATTTGTTTTACCTTGGAAAAGTACATCAAGTGATTCTGACCAGTGCTTACAAATTTGCCCTTCTGTTGATCATCCTCAGCGTCCATATTCCTGGGGTTCTGTTGTTGCGGTGGGATCTGGTTATGCATCTGGAAAGGACTTGACGGTTATGGATCAGGTTTCACTTTCAGGACAGTATACTTCAAAGCAAGAAAATACGATGCCTAATGTTACTTTTCAGTTGAATCAGCTTGAGAAGAAAGATAAACTTCTGTGTTGTACTAGTAACGTAAATAAACAACTTTGGCTTAGTGTTGGGGCAGATGCCTCAGTTCTTCATACTGAACTCAACGCACCTGTTTATGATTGGAGAATCTCTGTCAATTCTCCTATGAAGTTGGAAAACAGACTTCCCTGTCCTGCTGAATTCACCATTTGGGAAAAGATAAAAGAAGGAAAGTGTATTGAGCGCCAGAATGGTATGATCTCTTCACGTGGCGGTGTTCATATATATTCAGCAGACATTCAGAAACCGATATATCTCACCTTGTTTGTTCAGGGTGGCTGGGTCATGGAGAAGGGCCCCATTCTTGTTTTGAATCTATATTCTAATGATCATGTCTCATCATTCTGGATGGTTCACCAGAAAAGTAAAAGGAGACTGCGAGTGAGTATTGAACGTGACATGGGAGGGACCACTGCTGCACCTAAAATGATAAGGTTTTTTGTTCCTTATTGGATCATTAATGAGTCATCTATTTCTTTGGCGTATCGAGTGGTGGAAGTGGAGCCTTTGGACAATGCAGACCCAGATTCCCCAATTGTTTCTAGAGCAGTCAACTCTGCAAAGACAGCTTTAAAAAATCCTACAAACTCCATGGAAAGGAAGCATTCAGCTGCAAGGAGAAACATTCAAGTACTTGAAGTTATTGAGGATACTAGTCCTGTTCCTAACATGCTTTCTCCGCAAGACTACAAAAGCCGCAGTGGAGCTATGCTGTTTTCATCTCAAAAAGATGTGTATCCGTCCTCTCGAGTTGGCCTTTCTGTTGCGATTCGCCATTCGGAAATTTACAGTTCTGGAATATCTCTTCATGAGCTTGAAAAGAAGGAACGGCTTGATGTAAAAGCATTCAGTTCAGATGGATATTATTACATGCTTTCAGCGCGCTTGAACATGACCTCAGACAGAACAAAGGTTGTGCACTTCCAACCCCACACATTGTTCGTGAATAGAGTTGGTTACAGCCTCTGCTTGCAGCAGTGTGATTCTCAGGCAGTGACATGGATTCATCCCACTGATTCTCCAAAACCCTTCTGTTGGCAGTCTGGTTCCAAAGTTGAAAAGTTGAAGCTGCGGGTGGATGGTTACAAATGGAGTACACCATTTAGTGTTTGTAATGAAGGTATTATGCGTGTTTGCTTGAGGAAAGATACTGGAAACGATCAACTGCAGTTACGAGTTGGAGTAAGAAGTGGAGCAAAGAACTCAAGCCTGGAAGTTATTTTCCGTCCAAACTCTTCCTTGAGTCCTTACAGGATTGAAAATCGTTCCATGTTTTTACCCATCCGTATTCGGCAAGTGGACGGTACCTTTGATTCATGGACCTTCCTTCTTCCTAATTCAGCAGCTTCCTTTTTATGGGAAGATCTTGGTAGAAGACGACTATTAGAAATGCTGGTAGAGGGGGCAGACCCATTGAAATCAGAGATGTATGATATTGATGAGATTTCTGATCATCCACCCATTAATGTGGGAAGTGGATCCTCTAGAGCTCTGCGTGTTACCATAATAAAAGAAGAGAAAGTTAATGTTGTCAAGATCAGTGACTGGATGCCAGAAAGTGAACCTACTGGAATCTTAAGTAGAAGGCATTCGTCATCCCTCTCTCAGCTTTCTAAACAGCAACAAACAGCAACTTCCTCTGATTGTGAATTTCATATTATTGTTGAGTTAGCTGAACTTGGGATATCCATTATTGACCATACACCTGAAGAAATCCTGTACCTTTCGATTCAGAATCTTCTTTTTGCATATTCAACCGGCTTGGGCTCTGGAGTCAGTAGGTTAAAACTTAGAATGCGTGGGATACAGTTGGACAACCAATTGCCATTAACCCCAATGCCAGTTCTCTTTAGGCCACATAGAGTTGGAGAGGAGATGGACTATATCTTGAAATTTTCTGTCACAATGCAATCCAATGGGTCACTGGATCTTTGTGTCTATCCGTATATTGGTCTCCATGGACCTGAAAATTCTGCCTTTTTGATAAACATTCATGAACCTATCATCTGGCGCCTTCATGAAATGATTCAGCAGGTCAACCTTAGTCGGTTGTATGATACTCAAACAACTGCCGTTTCTGTTGATCCAATCGTTGAAATTGGGGTTCTTAACATATCAGAGGTTCGATTTAAAATGTCAATGGCTATGTCACCTAGTCAGCGGCCAAGAGGTGTTCTTGGATTTTGGGCATCTTTAATGACTGCATTAGGGAACACTGAGAATATGGCAGTGAGGATCAATCAAAGGTTTCTTGAAAATGTGTGCATGAGGCAGAGTTCCATGATTAGTATTGCTATTTCAAACATTCAAAAGGATCTTTTAGGCCAGCCTCTACAACTGCTCTCAGGTGTCGATATACTGGGTAATGCAAGTAGTGCACTTGGACATATGAGCAGGGGTGTGGCTGCCTTATCATTTGATAAGAAGTTCATTCAAAGCCGACAAAGACAGGAAAGCAAGGGTGTAGAGGACTTTGGTGATGTTATTAGAGAAGGAGGTGGAGCACTGGCAAAAGGCTTCTTCAGAGGAGTCACGGGCATATTGACAAAGCCACTTGAAGGTGCTAAGTCTTCTGGTGTTGAGGGTTTTGTTCAAGGTGTTGGAAAAGGATTAATTGGTGCAGCTGCACAACCGGTGAGTGGGGTTCTGGATCTTCTGTCAAAAACTACTGAAGGTGCTAATGCAATGAAAATGAAGATAGCATCAGCTATAACTTCTGAAGATCAACTCCTCCGTAGACGACTGCCGCGTGTAATTAGTGGTGATAATTTACTTGGACCATATGATGACTACAAAGCTCAAGGACAGGTTATATTGCAGCTGGCAGAATCAGGTTCATTTTTCCTCCAGGTTGATCTATTCAAAGTACGTGGAAAGTTTGCGTTATCAGATGCTTATGAAGATCACTTTTTAATCCGCAAAGGAAAAGTTCTTGTGGTCACTCATCGAAGAGTGATACTGCTGCAACAACCCAATACTATTTCTCAGAAGAAGTTCAACCCAGCTAGGGATCCCTGTTCGGTATTGTGGGATGTACTTTGGGATGACCTGGTGACAATGGAACTGGCATTTGGAAAAAAAGACCACCCAAAAGCTCCACATTCGCGGCTCATTCTTTATTTACGTGATAGATCAACCGAGATGAGGGAGCAAGCTCGTGTAATAAAGTGCATCCGTGACACCCCCCAGGCTTTTGATGTGTACACCTCAATTGAACGAGCAATGAACATTTATGGACCAAACAAAACAAAGGAAAGGCCAACAAAAAATGTGACAAAGCCATATTCACCGCTTGCTGATAGCACCGGTGCTGAAGTTAACCCAAAAGAAGGGCTTAGCTCCTTGTCACCCCGACCGATGCCACTTCCTCGTTCAATGTTTGGCAGGAGTGCCAACTGA

Protein Analysis

4153

Amino Acids

463.42

Weight (kDa)

5.9

Isoelectric Point (pI)

42.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VPS13_N PF12624 1 - 699 5.4e-99 VPS13-like family N-terminal region
ATG2_CAD PF13329 8 - 166 3.1e-08 Autophagy-related protein 2
VPS13_M PF25033 1402 - 1544 2.2e-07 VPS13-like family middle region
Vps62 PF06101 2001 - 2172 1.1e-10 Vacuolar protein sorting-associated protein 62
Vps62 PF06101 2313 - 2397 3.3e-07 Vacuolar protein sorting-associated protein 62
VPS13_VAB PF25036 3011 - 3446 1.4e-22 Vacuolar-sorting associated protein 13, adaptor binding domain
VPS13_C PF25037 3935 - 4042 3.5e-11 Intermembrane lipid transfer protein VPS13, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 2123, 5432, 5993
AasI GACNNNNNNGTC 3 cut(s) 4840, 7651, 9192
Acc36I ACCTGC 3 cut(s) 3022, 6649, 11086
Acc65I GGTACC 3 cut(s) 185, 7005, 10367
AccB1I GGYRCC 7 cut(s) 185, 524, 3872, 7005, 7132, 10367, 11073
AccB7I CCANNNNNTGG 3 cut(s) 760, 2215, 6899
AccBSI CCGCTC 1 cut(s) 6468
AccI GTMKAC 8 cut(s) 1722, 2638, 5305, 5501, 6761, 7414, 8975, 11800
AccII CGCG 4 cut(s) 4711, 9946, 11812, 12169
AccIII TCCGGA 1 cut(s) 4470
AcoI YGGCCR 1 cut(s) 11225
AcvI CACGTG 2 cut(s) 7220, 9272
AcyI GRCGYC 1 cut(s) 11074
AdeI CACNNNGTG 2 cut(s) 5978, 7223
AfeI AGCGCT 2 cut(s) 1002, 7618
AflII CTTAAG 4 cut(s) 3068, 3601, 4211, 10639
AflIII ACRYGT 3 cut(s) 13, 2103, 4398
AgeI ACCGGT 3 cut(s) 1080, 11695, 12368
AhdI GACNNNNNGTC 1 cut(s) 65
AhlI ACTAGT 2 cut(s) 9059, 9716
AjiI CACGTC 3 cut(s) 16, 3958, 5441
AjuI GAANNNNNNNTTGG 8 cut(s) 73, 105, 3844, 3876, 7107, 7139, 12117, 12149
Alw44I GTGCAC 5 cut(s) 2354, 6699, 8250, 9980, 11439
AlwNI CAGNNNCTG 3 cut(s) 164, 10029, 10608
Ama87I CYCGRG 3 cut(s) 2348, 6132, 9810
Aor13HI TCCGGA 1 cut(s) 4470
Aor51HI AGCGCT 2 cut(s) 1002, 7618
ApaI GGGCCC 3 cut(s) 8186, 8522, 9362
ApaLI GTGCAC 5 cut(s) 2354, 6699, 8250, 9980, 11439
ArsI GACNNNNNNTTYG 9 cut(s) 32, 299, 331, 498, 530, 5356, 5388, 10355, 10387
AseI ATTAAT 6 cut(s) 1416, 2922, 6309, 9522, 10527, 11675
AsiGI ACCGGT 3 cut(s) 1080, 11695, 12368
Asp700I GAANNNNTTC 4 cut(s) 5766, 10651, 11088, 12056
Asp718I GGTACC 3 cut(s) 185, 7005, 10367
AspA2I CCTAGG 3 cut(s) 3877, 7094, 8762
AspLEI GCGC 8 cut(s) 1003, 4920, 5079, 7619, 9249, 9946, 9948, 11076
AsuC2I CCSGG 3 cut(s) 2225, 3183, 8393
AsuII TTCGAA 1 cut(s) 6
AsuNHI GCTAGC 2 cut(s) 1712, 8296
AvaI CYCGRG 3 cut(s) 2348, 6132, 9810
AvaII GGWCC 9 cut(s) 1093, 3844, 6102, 7735, 9471, 10383, 11024, 11840, 12299
AvrII CCTAGG 3 cut(s) 3877, 7094, 8762
BaeI ACNNNNGTAYC 2 cut(s) 5811, 5844
BamHI GGATCC 4 cut(s) 1210, 5209, 10541, 12073
BanI GGYRCC 7 cut(s) 185, 524, 3872, 7005, 7132, 10367, 11073
BanII GRGCYC 8 cut(s) 1021, 2015, 5836, 8186, 8522, 9362, 10555, 10832
BarI GAAGNNNNNNTAC 6 cut(s) 717, 749, 5489, 5521, 9250, 9282
BauI CACGAG 1 cut(s) 12219
BbrPI CACGTG 2 cut(s) 7220, 9272
BbsI GAAGAC 9 cut(s) 2727, 4008, 4057, 7577, 7669, 8394, 8447, 10444, 11625
BbvCI CCTCAGC 3 cut(s) 3417, 7305, 8874
BceAI ACGGC 4 cut(s) 1110, 1884, 9908, 11120
BcgI CGANNNNNNTGC 4 cut(s) 3796, 3830, 6928, 6962
BclI TGATCA 5 cut(s) 2284, 4741, 8866, 9391, 10513
BcnI CCSGG 3 cut(s) 2225, 3183, 8393
BcuI ACTAGT 2 cut(s) 9059, 9716
BfmI CTRYAG 8 cut(s) 2478, 3630, 4353, 4404, 5068, 6369, 8139, 10229
BfoI RGCGCY 4 cut(s) 1004, 7620, 9250, 11077
BfrI CTTAAG 4 cut(s) 3068, 3601, 4211, 10639
BfuAI ACCTGC 3 cut(s) 3022, 6649, 11086
BglII AGATCT 5 cut(s) 2482, 3835, 4852, 7145, 10426
BlnI CCTAGG 3 cut(s) 3877, 7094, 8762
BlpI GCTNAGC 1 cut(s) 12398
BmcAI AGTACT 3 cut(s) 3628, 7437, 9696
Bme18I GGWCC 9 cut(s) 1093, 3844, 6102, 7735, 9471, 10383, 11024, 11840, 12299
BmeRI GACNNNNNGTC 1 cut(s) 65
BmeT110I CYCGRG 3 cut(s) 2348, 6132, 9810
BmgBI CACGTC 3 cut(s) 16, 3958, 5441
BmrI ACTGGG 1 cut(s) 11432
BmtI GCTAGC 2 cut(s) 1716, 8300
BmuI ACTGGG 1 cut(s) 11432
BpiI GAAGAC 9 cut(s) 2727, 4008, 4057, 7577, 7669, 8394, 8447, 10444, 11625
Bpu10I CCTNAGC 4 cut(s) 3417, 7305, 7971, 8874
Bpu1102I GCTNAGC 1 cut(s) 12398
Bpu14I TTCGAA 1 cut(s) 6
BpuMI CCSGG 3 cut(s) 2225, 3183, 8393
Bsa29I ATCGAT 1 cut(s) 5334
BsaAI YACGTR 5 cut(s) 737, 7220, 9272, 11933, 12188
BsaBI GATNNNNATC 5 cut(s) 1209, 1542, 3527, 7809, 9798
BsaHI GRCGYC 1 cut(s) 11074
BsaI GGTCTC 4 cut(s) 802, 5490, 6823, 11021
BsaWI WCCGGW 6 cut(s) 1080, 1488, 1654, 4470, 11695, 12368
BsaXI ACNNNNNCTCC 9 cut(s) 33, 1728, 1758, 2930, 2960, 6153, 6183, 10066, 10096
Bse118I RCCGGY 5 cut(s) 1080, 2891, 10820, 11695, 12368
Bse8I GATNNNNATC 5 cut(s) 1209, 1542, 3527, 7809, 9798
BseAI TCCGGA 1 cut(s) 4470
BseCI ATCGAT 1 cut(s) 5334
BseJI GATNNNNATC 5 cut(s) 1209, 1542, 3527, 7809, 9798
BsePI GCGCGC 1 cut(s) 9944
BseRI GAGGAG 8 cut(s) 1415, 2783, 2786, 3245, 5620, 10949, 11604, 11783
BseYI CCCAGC 4 cut(s) 3712, 8185, 9342, 12064
BsgI GTGCAG 4 cut(s) 7734, 9465, 11673, 11703
Bsh1236I CGCG 4 cut(s) 4711, 9946, 11812, 12169
Bsh1285I CGRYCG 3 cut(s) 4420, 6073, 12419
BshNI GGYRCC 7 cut(s) 185, 524, 3872, 7005, 7132, 10367, 11073
BshTI ACCGGT 3 cut(s) 1080, 11695, 12368
BshVI ATCGAT 1 cut(s) 5334
BsiEI CGRYCG 3 cut(s) 4420, 6073, 12419
BsiHKCI CYCGRG 3 cut(s) 2348, 6132, 9810
BslFI GGGAC 7 cut(s) 1106, 2584, 4487, 5048, 6803, 7657, 9484
BsmBI CGTCTC 2 cut(s) 3122, 5745
BsmFI GGGAC 7 cut(s) 1106, 2584, 4487, 5048, 6803, 7657, 9484
Bso31I GGTCTC 4 cut(s) 802, 5490, 6823, 11021
BsoBI CYCGRG 3 cut(s) 2348, 6132, 9810
Bsp119I TTCGAA 1 cut(s) 6
Bsp120I GGGCCC 3 cut(s) 8182, 8518, 9358
Bsp13I TCCGGA 1 cut(s) 4470
Bsp1407I TGTACA 5 cut(s) 469, 3612, 4857, 7546, 12264
Bsp1720I GCTNAGC 1 cut(s) 12398
Bsp19I CCATGG 5 cut(s) 206, 2468, 5029, 9654, 11020
BspDI ATCGAT 1 cut(s) 5334
BspEI TCCGGA 1 cut(s) 4470
BspFNI CGCG 4 cut(s) 4711, 9946, 11812, 12169
BspHI TCATGA 8 cut(s) 646, 2385, 3226, 7963, 8326, 9871, 11056, 11080
BspMAI CTGCAG 5 cut(s) 2482, 3634, 4357, 8143, 10233
BspMI ACCTGC 3 cut(s) 3022, 6649, 11086
BspOI GCTAGC 2 cut(s) 1716, 8300
BspQI GCTCTTC 1 cut(s) 2020
BspT104I TTCGAA 1 cut(s) 6
BspT107I GGYRCC 7 cut(s) 185, 524, 3872, 7005, 7132, 10367, 11073
BspTI CTTAAG 4 cut(s) 3068, 3601, 4211, 10639
BspTNI GGTCTC 4 cut(s) 802, 5490, 6823, 11021
BsrBI CCGCTC 1 cut(s) 6468
BsrFI RCCGGY 5 cut(s) 1080, 2891, 10820, 11695, 12368
BsrGI TGTACA 5 cut(s) 469, 3612, 4857, 7546, 12264
BssAI RCCGGY 5 cut(s) 1080, 2891, 10820, 11695, 12368
BssHII GCGCGC 1 cut(s) 9944
BssNAI GTATAC 3 cut(s) 1723, 5502, 8976
BssNI GRCGYC 1 cut(s) 11074
BssSI CACGAG 1 cut(s) 12219
Bst1107I GTATAC 3 cut(s) 1723, 5502, 8976
Bst2BI CACGAG 1 cut(s) 12219
Bst6I CTCTTC 9 cut(s) 2020, 2125, 3152, 5591, 9271, 9873, 10303, 10572, 12007
BstACI GRCGYC 1 cut(s) 11074
BstAFI CTTAAG 4 cut(s) 3068, 3601, 4211, 10639
BstAPI GCANNNNNTGC 4 cut(s) 1709, 2462, 6020, 11438
BstAUI TGTACA 5 cut(s) 469, 3612, 4857, 7546, 12264
BstBAI YACGTR 5 cut(s) 737, 7220, 9272, 11933, 12188
BstBI TTCGAA 1 cut(s) 6
BstDSI CCRYGG 9 cut(s) 206, 665, 2468, 2761, 4630, 4938, 5029, 9654, 11020
BstEII GGTNACC 1 cut(s) 2218
BstENI CCTNNNNNAGG 1 cut(s) 6843
BstFNI CGCG 4 cut(s) 4711, 9946, 11812, 12169
BstH2I RGCGCY 4 cut(s) 1004, 7620, 9250, 11077
BstHHI GCGC 8 cut(s) 1003, 4920, 5079, 7619, 9249, 9946, 9948, 11076
BstMCI CGRYCG 3 cut(s) 4420, 6073, 12419
BstNSI RCATGY 8 cut(s) 1250, 1477, 2107, 4402, 7206, 8636, 9736, 9937
BstPI GGTNACC 1 cut(s) 2218
BstSFI CTRYAG 8 cut(s) 2478, 3630, 4353, 4404, 5068, 6369, 8139, 10229
BstUI CGCG 4 cut(s) 4711, 9946, 11812, 12169
BstV2I GAAGAC 9 cut(s) 2727, 4008, 4057, 7577, 7669, 8394, 8447, 10444, 11625
BstXI CCANNNNNNTGG 4 cut(s) 708, 1029, 8889, 10531
BstZ17I GTATAC 3 cut(s) 1723, 5502, 8976
Bsu15I ATCGAT 1 cut(s) 5334
BsuTUI ATCGAT 1 cut(s) 5334
BtgI CCRYGG 9 cut(s) 206, 665, 2468, 2761, 4630, 4938, 5029, 9654, 11020
BtgZI GCGATG 1 cut(s) 7818
BtrI CACGTC 3 cut(s) 16, 3958, 5441
BtsI GCAGTG 6 cut(s) 6216, 9474, 9769, 10046, 10062, 11298
BveI ACCTGC 3 cut(s) 3022, 6649, 11086
CaiI CAGNNNCTG 3 cut(s) 164, 10029, 10608
CciI TCATGA 8 cut(s) 646, 2385, 3226, 7963, 8326, 9871, 11056, 11080
CfoI GCGC 8 cut(s) 1003, 4920, 5079, 7619, 9249, 9946, 9948, 11076
Cfr10I RCCGGY 5 cut(s) 1080, 2891, 10820, 11695, 12368
ClaI ATCGAT 1 cut(s) 5334
CseI GACGC 2 cut(s) 4534, 8867
CsiI ACCWGGT 2 cut(s) 7021, 12111
CspAI ACCGGT 3 cut(s) 1080, 11695, 12368
CspCI CAANNNNNGTGG 2 cut(s) 11914, 11949
DinI GGCGCC 1 cut(s) 11075
DraI TTTAAA 4 cut(s) 1600, 4951, 9636, 11194
DraIII CACNNNGTG 2 cut(s) 5978, 7223
DrdI GACNNNNNNGTC 3 cut(s) 4840, 7651, 9192
DriI GACNNNNNGTC 1 cut(s) 65
DseDI GACNNNNNNGTC 3 cut(s) 4840, 7651, 9192
EaeI YGGCCR 1 cut(s) 11225
Eam1104I CTCTTC 9 cut(s) 2020, 2125, 3152, 5591, 9271, 9873, 10303, 10572, 12007
Eam1105I GACNNNNNGTC 1 cut(s) 65
EarI CTCTTC 9 cut(s) 2020, 2125, 3152, 5591, 9271, 9873, 10303, 10572, 12007
EciI GGCGGA 1 cut(s) 3449
Ecl136II GAGCTC 2 cut(s) 5834, 10553
Eco147I AGGCCT 1 cut(s) 6130
Eco24I GRGCYC 8 cut(s) 1021, 2015, 5836, 8186, 8522, 9362, 10555, 10832
Eco31I GGTCTC 4 cut(s) 802, 5490, 6823, 11021
Eco32I GATATC 4 cut(s) 456, 4489, 5956, 10749
Eco47I GGWCC 9 cut(s) 1093, 3844, 6102, 7735, 9471, 10383, 11024, 11840, 12299
Eco47III AGCGCT 2 cut(s) 1002, 7618
Eco53kI GAGCTC 2 cut(s) 5834, 10553
Eco72I CACGTG 2 cut(s) 7220, 9272
Eco88I CYCGRG 3 cut(s) 2348, 6132, 9810
Eco91I GGTNACC 1 cut(s) 2218
EcoICRI GAGCTC 2 cut(s) 5834, 10553
EcoNI CCTNNNNNAGG 1 cut(s) 6843
EcoO109I RGGNCCY 6 cut(s) 136, 6102, 8182, 8519, 9358, 9359
EcoO65I GGTNACC 1 cut(s) 2218
EcoRI GAATTC 3 cut(s) 3548, 4258, 9203
EcoRV GATATC 4 cut(s) 456, 4489, 5956, 10749
EcoT22I ATGCAT 3 cut(s) 5806, 7046, 8926
EcoT38I GRGCYC 8 cut(s) 1021, 2015, 5836, 8186, 8522, 9362, 10555, 10832
EgeI GGCGCC 1 cut(s) 11075
EheI GGCGCC 1 cut(s) 11075
Esp3I CGTCTC 2 cut(s) 3122, 5745
FaqI GGGAC 7 cut(s) 1106, 2584, 4487, 5048, 6803, 7657, 9484
FauI CCCGC 1 cut(s) 10128
FauNDI CATATG 7 cut(s) 3039, 5347, 5755, 6223, 7534, 11451, 11845
FbaI TGATCA 5 cut(s) 2284, 4741, 8866, 9391, 10513
FblI GTMKAC 8 cut(s) 1722, 2638, 5305, 5501, 6761, 7414, 8975, 11800
FriOI GRGCYC 8 cut(s) 1021, 2015, 5836, 8186, 8522, 9362, 10555, 10832
GlaI GCGC 8 cut(s) 1002, 4919, 5078, 7618, 9248, 9945, 9947, 11075
GsaI CCCAGC 4 cut(s) 3716, 8189, 9346, 12068
HaeII RGCGCY 4 cut(s) 1004, 7620, 9250, 11077
HgaI GACGC 2 cut(s) 4534, 8867
HhaI GCGC 8 cut(s) 1003, 4920, 5079, 7619, 9249, 9946, 9948, 11076
Hin1I GRCGYC 1 cut(s) 11074
Hin6I GCGC 8 cut(s) 1001, 4918, 5077, 7617, 9247, 9944, 9946, 11074
HinP1I GCGC 8 cut(s) 1001, 4918, 5077, 7617, 9247, 9944, 9946, 11074
HincII GTYRAC 9 cut(s) 1590, 2236, 4684, 5554, 7111, 7415, 9616, 11101, 12382
HindII GTYRAC 9 cut(s) 1590, 2236, 4684, 5554, 7111, 7415, 9616, 11101, 12382
HindIII AAGCTT 7 cut(s) 72, 2817, 3077, 4613, 5765, 6993, 7707
HpaI GTTAAC 2 cut(s) 7111, 12382
Hpy99I CGWCG 3 cut(s) 1125, 3811, 4418
Hsp92I GRCGYC 1 cut(s) 11074
HspAI GCGC 8 cut(s) 1001, 4918, 5077, 7617, 9247, 9944, 9946, 11074
KasI GGCGCC 1 cut(s) 11073
Kpn2I TCCGGA 1 cut(s) 4470
KpnI GGTACC 3 cut(s) 189, 7009, 10371
Ksp22I TGATCA 5 cut(s) 2284, 4741, 8866, 9391, 10513
KspAI GTTAAC 2 cut(s) 7111, 12382
LguI GCTCTTC 1 cut(s) 2020
MabI ACCWGGT 2 cut(s) 7021, 12111
MbiI CCGCTC 1 cut(s) 6468
MfeI CAATTG 6 cut(s) 2856, 5090, 7011, 9597, 10883, 12273
Mly113I GGCGCC 1 cut(s) 11074
MmeI TCCRAC 9 cut(s) 1714, 4734, 7458, 9156, 10012, 10222, 10854, 10909, 11644
Mph1103I ATGCAT 3 cut(s) 5806, 7046, 8926
MroI TCCGGA 1 cut(s) 4470
MroXI GAANNNNTTC 4 cut(s) 5766, 10651, 11088, 12056
MspA1I CMGCKG 7 cut(s) 2909, 6020, 6896, 9674, 11224, 11687, 11884
MspCI CTTAAG 4 cut(s) 3068, 3601, 4211, 10639
MssI GTTTAAAC 1 cut(s) 1600
MunI CAATTG 6 cut(s) 2856, 5090, 7011, 9597, 10883, 12273
MvnI CGCG 4 cut(s) 4711, 9946, 11812, 12169
NarI GGCGCC 1 cut(s) 11074
NciI CCSGG 3 cut(s) 2225, 3183, 8393
NcoI CCATGG 5 cut(s) 206, 2468, 5029, 9654, 11020
NdeI CATATG 7 cut(s) 3039, 5347, 5755, 6223, 7534, 11451, 11845
NheI GCTAGC 2 cut(s) 1712, 8296
NsiI ATGCAT 3 cut(s) 5806, 7046, 8926
NspI RCATGY 8 cut(s) 1250, 1477, 2107, 4402, 7206, 8636, 9736, 9937
NspV TTCGAA 1 cut(s) 6
PaeI GCATGC 1 cut(s) 7206
PaeR7I CTCGAG 2 cut(s) 6132, 9810
PagI TCATGA 8 cut(s) 646, 2385, 3226, 7963, 8326, 9871, 11056, 11080
PauI GCGCGC 1 cut(s) 9944
PceI AGGCCT 1 cut(s) 6130
PciI ACATGT 2 cut(s) 2103, 4398
PciSI GCTCTTC 1 cut(s) 2020
PcsI WCGNNNNNNNCGW 2 cut(s) 12, 11809
PdmI GAANNNNTTC 4 cut(s) 5766, 10651, 11088, 12056
PflFI GACNNNGTC 3 cut(s) 2915, 7744, 7868
PflMI CCANNNNNTGG 3 cut(s) 760, 2215, 6899
PfoI TCCNGGA 1 cut(s) 502
PinAI ACCGGT 3 cut(s) 1080, 11695, 12368
Ple19I CGATCG 1 cut(s) 6073
PluTI GGCGCC 1 cut(s) 11077
PmaCI CACGTG 2 cut(s) 7220, 9272
PmeI GTTTAAAC 1 cut(s) 1600
PmlI CACGTG 2 cut(s) 7220, 9272
Ppu21I YACGTR 5 cut(s) 737, 7220, 9272, 11933, 12188
PpuMI RGGWCCY 1 cut(s) 6102
PscI ACATGT 2 cut(s) 2103, 4398
PshBI ATTAAT 6 cut(s) 1416, 2922, 6309, 9522, 10527, 11675
PsiI TTATAA 3 cut(s) 2123, 5432, 5993
Psp124BI GAGCTC 2 cut(s) 5836, 10555
Psp5II RGGWCCY 1 cut(s) 6102
PspCI CACGTG 2 cut(s) 7220, 9272
PspEI GGTNACC 1 cut(s) 2218
PspFI CCCAGC 4 cut(s) 3712, 8185, 9342, 12064
PspOMI GGGCCC 3 cut(s) 8182, 8518, 9358
PspPPI RGGWCCY 1 cut(s) 6102
PspXI VCTCGAGB 1 cut(s) 6132
PsrI GAACNNNNNNTAC 4 cut(s) 2637, 2659, 2669, 2691
PstI CTGCAG 5 cut(s) 2482, 3634, 4357, 8143, 10233
PstNI CAGNNNCTG 3 cut(s) 164, 10029, 10608
PsyI GACNNNGTC 3 cut(s) 2915, 7744, 7868
PteI GCGCGC 1 cut(s) 9944
PvuI CGATCG 1 cut(s) 6073
PvuII CAGCTG 6 cut(s) 2909, 6020, 6896, 9674, 11687, 11884
SacI GAGCTC 2 cut(s) 5836, 10555
SalI GTCGAC 1 cut(s) 7413
SapI GCTCTTC 1 cut(s) 2020
ScaI AGTACT 3 cut(s) 3628, 7437, 9696
SexAI ACCWGGT 2 cut(s) 7021, 12111
SfcI CTRYAG 8 cut(s) 2478, 3630, 4353, 4404, 5068, 6369, 8139, 10229
SfoI GGCGCC 1 cut(s) 11075
Sfr274I CTCGAG 2 cut(s) 6132, 9810
SfuI TTCGAA 1 cut(s) 6
SgrAI CRCCGGYG 1 cut(s) 12368
SinI GGWCC 9 cut(s) 1093, 3844, 6102, 7735, 9471, 10383, 11024, 11840, 12299
SlaI CTCGAG 2 cut(s) 6132, 9810
SpeI ACTAGT 2 cut(s) 9059, 9716
SphI GCATGC 1 cut(s) 7206
SseBI AGGCCT 1 cut(s) 6130
SspDI GGCGCC 1 cut(s) 11073
SspI AATATT 7 cut(s) 926, 2578, 5638, 6379, 6909, 7123, 7518
SstI GAGCTC 2 cut(s) 5836, 10555
StuI AGGCCT 1 cut(s) 6130
TaqII GACCGA 2 cut(s) 481, 12433
TauI GCSGC 7 cut(s) 1283, 4208, 7495, 9762, 11227, 11812, 12172
Tth111I GACNNNGTC 3 cut(s) 2915, 7744, 7868
Van91I CCANNNNNTGG 3 cut(s) 760, 2215, 6899
Vha464I CTTAAG 4 cut(s) 3068, 3601, 4211, 10639
VneI GTGCAC 5 cut(s) 2354, 6699, 8250, 9980, 11439
VpaK11BI GGWCC 9 cut(s) 1093, 3844, 6102, 7735, 9471, 10383, 11024, 11840, 12299
VspI ATTAAT 6 cut(s) 1416, 2922, 6309, 9522, 10527, 11675
XagI CCTNNNNNAGG 1 cut(s) 6843
XbaI TCTAGA 3 cut(s) 5602, 9605, 10547
XceI RCATGY 8 cut(s) 1250, 1477, 2107, 4402, 7206, 8636, 9736, 9937
XcmI CCANNNNNNNNNTGG 4 cut(s) 1029, 6822, 7856, 10984
XhoI CTCGAG 2 cut(s) 6132, 9810
XmaJI CCTAGG 3 cut(s) 3877, 7094, 8762
XmiI GTMKAC 8 cut(s) 1722, 2638, 5305, 5501, 6761, 7414, 8975, 11800
XmnI GAANNNNTTC 4 cut(s) 5766, 10651, 11088, 12056
ZrmI AGTACT 3 cut(s) 3628, 7437, 9696
Zsp2I ATGCAT 3 cut(s) 5806, 7046, 8926
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.