Rw4G030740
TCP Family

Belongs to the chaperonin (HSP60) family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Reverse (-)
57434622 .. 57438901
4280 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G030740.1

Sequence Viewer

Length: 1428 bp
ATGAATCCCATTCAAATTGCTCGTGGGATCGAGAAGACTGCAGTGGCCCTAGTTTCTGAACTCAAATTGATGTCCAGAGAGATTGAGGATCATGAACTTGCAGATGTTGCTGCAGTTAGTGCAGGCAATGATTATACAGTGGGGAACATGATTTACAATGCTCTTTGTCAAGTAGGAAAGAAGGGTGTAATTACTATTGAAAAAGGGAAGTCTACGGAAAACACTCTTCAAATTGTTGAAGGAATGCAGTTTGATCGTGGATACTTATCTCCTTACTTTGTCACTGATCGACAAAAAATGATAGCGGAGTTTCAAGAGTGTAAGTTGCTTTTGGTTGACAAAAAAATTACACACCCGGAGGAGCTGTTTAAGATATTGGACAATGCAGTGAAAGAGAAGTATCCAATTGTGATAGTTGCCGAGGGGATTGAGCAGGAAGCTTTAACTCCAGTAATAAGAAACAAGCTCAGAGGTGCACTGAAAGCAGTCGCCATTAAGGCGCCTGCCTTCGGTGAACGCAAAAGCCACTACTTAGACGACATTGCCATTTTGACCGGAGCAACAGTTGTAAGAGAAGAGATGGGAATGATTTTACATAAGACTGGCCCGGAGGTATTGGGGACTGCTACTAAGGTTGTGATAACAAAGGACTCTACACTGATAGTTACTGATGGAAGCACTCGAGAAGCTGTTGACAAGAGGGTTTCTCAGATACAAAGGCTTGTTGAGAACACTAAAGAAGAATTTCAAAAGAAGATATTAAATGAAAGAATAGGAAGATTATCAGGGGGGATTGCTATTCTGCAGGTAGGAGCACAAACGCAAGTTGAGTTGAAGGATAAACAACTCAGAATTGAAGATGCTTTGAATGCAACCAAGGCAGCAATTGAGGAAGGTGTTGTAGTTGGTGGTGGCTGCTGCCTTTTGAGGCTCTCGAAAAAGATGGATGTCATCAAAGAACTTTTGGAAAATGAAGAACAGAAGATTGGAGCGGAAATATTCAAGAAAGCTCTAAGCTATCCTGCAAAACTGATAGCTAAAAATGCAGGTGTAAATGGCAGTGTTGTAGTAGAGAAGGTTCTATCAAATGCTGATATGGGGTACGGATATAATGCTGCAAGAGACTGCTATGAGGACCTAATGAAAGCTGGGATTATGGATCCATCAAAGGTTGTTAGATGTTGTTTGGAGCATGCTGCATCAGTCGCAAAAACTTTTCTGTTGTCTGATGCTGTTGTCGTCGAGATTAAGGAATTGAATCCCATCCCAAGAAGAATGCCAAGGCGAAGGCCAAAGCCACCCCTTCCCCCCATGCCCCAAATGCCACAGATGCCGCAATGTCACCCATGCCGCCAATGCCACCAATGTCCATGCCAACCTCAGGTGCTCGATCATTTGGTTCCAAGTATGGCAGATGAAACTCAATGA

Protein Analysis

475

Amino Acids

52.41

Weight (kDa)

7.88

Isoelectric Point (pI)

40.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cpn60_TCP1 PF00118 1 - 415 1.7e-53 TCP-1/cpn60 chaperonin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1037
Acc36I ACCTGC 2 cut(s) 796, 1037
AccB1I GGYRCC 1 cut(s) 499
AccBSI CCGCTC 1 cut(s) 992
AccI GTMKAC 1 cut(s) 212
AciI CCGC 4 cut(s) 305, 992, 1334, 1351
AclWI GGATC 4 cut(s) 35, 96, 1154, 1167
AcsI RAATTY 1 cut(s) 743
AcyI GRCGYC 1 cut(s) 500
AfaI GTAC 1 cut(s) 1103
AfiI CCNNNNNNNGG 2 cut(s) 509, 1381
AjuI GAANNNNNNNTTGG 2 cut(s) 969, 1001
AluBI AGCT 8 cut(s) 364, 440, 466, 689, 1010, 1017, 1037, 1148
AluI AGCT 8 cut(s) 364, 440, 466, 689, 1010, 1017, 1037, 1148
Alw21I GWGCWC 3 cut(s) 478, 817, 1389
Alw26I GTCTC 1 cut(s) 1116
Alw44I GTGCAC 1 cut(s) 474
AlwI GGATC 4 cut(s) 35, 96, 1154, 1167
Ama87I CYCGRG 1 cut(s) 681
AoxI GGCC 3 cut(s) 45, 604, 1289
ApaLI GTGCAC 1 cut(s) 474
ApeKI GCWGC 6 cut(s) 110, 881, 915, 918, 1115, 1196
ApoI RAATTY 1 cut(s) 743
Asp700I GAANNNNTTC 1 cut(s) 744
AspLEI GCGC 1 cut(s) 502
AspS9I GGNCC 3 cut(s) 46, 605, 1135
AsuC2I CCSGG 2 cut(s) 356, 608
AsuHPI GGTGA 2 cut(s) 524, 1334
AvaI CYCGRG 1 cut(s) 681
AvaII GGWCC 1 cut(s) 1135
AxyI CCTNAGG 1 cut(s) 1380
BaeGI GKGCMC 1 cut(s) 478
BamHI GGATCC 1 cut(s) 1159
BanI GGYRCC 1 cut(s) 499
BauI CACGAG 1 cut(s) 21
BbsI GAAGAC 1 cut(s) 41
Bbv12I GWGCWC 3 cut(s) 478, 817, 1389
BbvI GCAGC 6 cut(s) 97, 893, 902, 905, 1102, 1183
BccI CCATC 5 cut(s) 574, 665, 937, 1171, 1271
BcgI CGANNNNNNTGC 4 cut(s) 20, 54, 236, 270
BciVI GTATCC 2 cut(s) 254, 411
BcnI CCSGG 2 cut(s) 356, 608
BcoDI GTCTC 1 cut(s) 1116
BfaI CTAG 1 cut(s) 50
BfmI CTRYAG 3 cut(s) 39, 111, 803
BfoI RGCGCY 1 cut(s) 503
BfuAI ACCTGC 2 cut(s) 796, 1037
BfuI GTATCC 2 cut(s) 254, 411
BglI GCCNNNNNGGC 1 cut(s) 497
BisI GCNGC 8 cut(s) 111, 882, 916, 919, 1116, 1197, 1334, 1351
BlsI GCNGC 8 cut(s) 112, 883, 917, 920, 1117, 1198, 1335, 1352
Bme1390I CCNGG 2 cut(s) 356, 608
Bme18I GGWCC 1 cut(s) 1135
BmeT110I CYCGRG 1 cut(s) 681
BmgT120I GGNCC 3 cut(s) 46, 605, 1135
BmiI GGNNCC 3 cut(s) 501, 1161, 1401
BmrFI CCNGG 2 cut(s) 356, 608
BmsI GCATC 4 cut(s) 850, 1208, 1219, 1320
BpiI GAAGAC 1 cut(s) 41
BplI GAGNNNNNCTC 2 cut(s) 691, 723
BpmI CTGGAG 1 cut(s) 432
BpuMI CCSGG 2 cut(s) 356, 608
BsaBI GATNNNNATC 1 cut(s) 265
BsaHI GRCGYC 1 cut(s) 500
BsaJI CCNNGG 3 cut(s) 420, 876, 1280
BsaWI WCCGGW 1 cut(s) 554
BsaXI ACNNNNNCTCC 4 cut(s) 350, 380, 549, 579
Bsc4I CCNNNNNNNGG 2 cut(s) 509, 1381
Bse1I ACTGG 2 cut(s) 449, 607
Bse21I CCTNAGG 1 cut(s) 1380
Bse3DI GCAATG 3 cut(s) 133, 540, 1343
Bse8I GATNNNNATC 1 cut(s) 265
BseDI CCNNGG 3 cut(s) 420, 876, 1280
BseGI GGATG 2 cut(s) 952, 1263
BseJI GATNNNNATC 1 cut(s) 265
BseLI CCNNNNNNNGG 2 cut(s) 509, 1381
BseMI GCAATG 3 cut(s) 133, 540, 1343
BseMII CTCAG 4 cut(s) 481, 722, 862, 1394
BseNI ACTGG 2 cut(s) 449, 607
BseRI GAGGAG 1 cut(s) 374
BseSI GKGCMC 1 cut(s) 478
BseXI GCAGC 6 cut(s) 97, 893, 902, 905, 1102, 1183
BseYI CCCAGC 1 cut(s) 1148
BsgI GTGCAG 1 cut(s) 141
BshFI GGCC 3 cut(s) 47, 606, 1291
BshNI GGYRCC 1 cut(s) 499
BsiHKAI GWGCWC 3 cut(s) 478, 817, 1389
BsiHKCI CYCGRG 1 cut(s) 681
BsiSI CCGG 3 cut(s) 356, 555, 608
BslFI GGGAC 1 cut(s) 634
BslI CCNNNNNNNGG 2 cut(s) 509, 1381
BsmAI GTCTC 1 cut(s) 1116
BsmFI GGGAC 1 cut(s) 634
BsmI GAATGC 3 cut(s) 249, 874, 1281
BsnI GGCC 3 cut(s) 47, 606, 1291
BsoBI CYCGRG 1 cut(s) 681
Bsp1286I GDGCHC 3 cut(s) 478, 817, 1389
Bsp143I GATC 6 cut(s) 27, 88, 253, 286, 1159, 1390
BspACI CCGC 4 cut(s) 305, 992, 1334, 1351
BspANI GGCC 3 cut(s) 47, 606, 1291
BspCNI CTCAG 4 cut(s) 480, 721, 861, 1393
BspHI TCATGA 1 cut(s) 91
BspLI GGNNCC 3 cut(s) 501, 1161, 1401
BspMAI CTGCAG 3 cut(s) 43, 115, 807
BspMI ACCTGC 2 cut(s) 796, 1037
BspPI GGATC 4 cut(s) 35, 96, 1154, 1167
BspT107I GGYRCC 1 cut(s) 499
BsrBI CCGCTC 1 cut(s) 992
BsrDI GCAATG 3 cut(s) 133, 540, 1343
BsrI ACTGG 2 cut(s) 449, 607
BssECI CCNNGG 3 cut(s) 420, 876, 1280
BssMI GATC 6 cut(s) 27, 88, 253, 286, 1159, 1390
BssNI GRCGYC 1 cut(s) 500
BssSI CACGAG 1 cut(s) 21
BssT1I CCWWGG 2 cut(s) 876, 1280
Bst2BI CACGAG 1 cut(s) 21
Bst4CI ACNGT 2 cut(s) 139, 565
Bst6I CTCTTC 2 cut(s) 231, 570
BstACI GRCGYC 1 cut(s) 500
BstAPI GCANNNNNTGC 2 cut(s) 107, 119
BstC8I GCNNGC 3 cut(s) 124, 504, 1194
BstDEI CTNAG 7 cut(s) 467, 532, 630, 708, 848, 1013, 1380
BstF5I GGATG 2 cut(s) 952, 1263
BstH2I RGCGCY 1 cut(s) 503
BstHHI GCGC 1 cut(s) 502
BstKTI GATC 6 cut(s) 30, 91, 256, 289, 1162, 1393
BstMAI GTCTC 1 cut(s) 1116
BstMBI GATC 6 cut(s) 27, 88, 253, 286, 1159, 1390
BstNSI RCATGY 1 cut(s) 1196
BstSCI CCNGG 2 cut(s) 354, 606
BstSFI CTRYAG 3 cut(s) 39, 111, 803
BstSLI GKGCMC 1 cut(s) 478
BstV1I GCAGC 6 cut(s) 97, 893, 902, 905, 1102, 1183
BstV2I GAAGAC 1 cut(s) 41
BstX2I RGATCY 1 cut(s) 1159
BstYI RGATCY 1 cut(s) 1159
Bsu36I CCTNAGG 1 cut(s) 1380
BsuI GTATCC 2 cut(s) 254, 411
BsuRI GGCC 3 cut(s) 47, 606, 1291
BtsCI GGATG 2 cut(s) 952, 1263
BtsI GCAGTG 3 cut(s) 48, 393, 1066
BtsIMutI CAGTG 7 cut(s) 48, 144, 282, 393, 476, 656, 1066
BveI ACCTGC 2 cut(s) 796, 1037
Cac8I GCNNGC 3 cut(s) 124, 504, 1194
CciI TCATGA 1 cut(s) 91
CfoI GCGC 1 cut(s) 502
Cfr13I GGNCC 3 cut(s) 46, 605, 1135
Csp6I GTAC 1 cut(s) 1102
CviAII CATG 6 cut(s) 92, 148, 1193, 1312, 1347, 1371
CviQI GTAC 1 cut(s) 1102
DdeI CTNAG 7 cut(s) 467, 532, 630, 708, 848, 1013, 1380
DinI GGCGCC 1 cut(s) 501
DpnI GATC 6 cut(s) 29, 90, 255, 288, 1161, 1392
DpnII GATC 6 cut(s) 27, 88, 253, 286, 1159, 1390
Eam1104I CTCTTC 2 cut(s) 231, 570
EarI CTCTTC 2 cut(s) 231, 570
Eco130I CCWWGG 2 cut(s) 876, 1280
Eco47I GGWCC 1 cut(s) 1135
Eco81I CCTNAGG 1 cut(s) 1380
Eco88I CYCGRG 1 cut(s) 681
EcoO109I RGGNCCY 1 cut(s) 1135
EcoT14I CCWWGG 2 cut(s) 876, 1280
EgeI GGCGCC 1 cut(s) 501
EheI GGCGCC 1 cut(s) 501
ErhI CCWWGG 2 cut(s) 876, 1280
FaeI CATG 6 cut(s) 95, 151, 1196, 1315, 1350, 1374
FaqI GGGAC 1 cut(s) 634
FatI CATG 6 cut(s) 91, 147, 1192, 1311, 1346, 1370
FblI GTMKAC 1 cut(s) 212
Fnu4HI GCNGC 8 cut(s) 111, 882, 916, 919, 1116, 1197, 1334, 1351
FokI GGATG 2 cut(s) 959, 1250
Fsp4HI GCNGC 8 cut(s) 111, 882, 916, 919, 1116, 1197, 1334, 1351
FspBI CTAG 1 cut(s) 50
GlaI GCGC 1 cut(s) 501
GluI GCNGC 8 cut(s) 111, 882, 916, 919, 1116, 1197, 1334, 1351
GsaI CCCAGC 1 cut(s) 1152
GsuI CTGGAG 1 cut(s) 432
HaeII RGCGCY 1 cut(s) 503
HaeIII GGCC 3 cut(s) 47, 606, 1291
HapII CCGG 3 cut(s) 356, 555, 608
HhaI GCGC 1 cut(s) 502
Hin1I GRCGYC 1 cut(s) 500
Hin1II CATG 6 cut(s) 95, 151, 1196, 1315, 1350, 1374
Hin6I GCGC 1 cut(s) 500
HinP1I GCGC 1 cut(s) 500
HincII GTYRAC 2 cut(s) 337, 694
HindII GTYRAC 2 cut(s) 337, 694
HindIII AAGCTT 1 cut(s) 438
HinfI GANTC 3 cut(s) 4, 650, 1258
HpaII CCGG 3 cut(s) 356, 555, 608
HphI GGTGA 2 cut(s) 524, 1334
Hpy166II GTNNAC 5 cut(s) 213, 337, 476, 515, 694
Hpy188I TCNGA 5 cut(s) 58, 470, 711, 851, 1228
Hpy188III TCNNGA 8 cut(s) 31, 75, 92, 314, 683, 934, 1003, 1243
Hpy8I GTNNAC 5 cut(s) 213, 337, 476, 515, 694
Hpy99I CGWCG 1 cut(s) 1244
HpyAV CCTTC 8 cut(s) 175, 233, 517, 829, 887, 1069, 1281, 1313
HpyCH4III ACNGT 2 cut(s) 139, 565
HpyF3I CTNAG 7 cut(s) 467, 532, 630, 708, 848, 1013, 1380
Hsp92I GRCGYC 1 cut(s) 500
Hsp92II CATG 6 cut(s) 95, 151, 1196, 1315, 1350, 1374
HspAI GCGC 1 cut(s) 500
KasI GGCGCC 1 cut(s) 499
Kzo9I GATC 6 cut(s) 27, 88, 253, 286, 1159, 1390
LmnI GCTCC 5 cut(s) 361, 557, 812, 989, 1189
Lsp1109I GCAGC 6 cut(s) 97, 893, 902, 905, 1102, 1183
LweI GCATC 4 cut(s) 850, 1208, 1219, 1320
MaeI CTAG 1 cut(s) 50
MaeIII GTNAC 3 cut(s) 280, 664, 1340
MalI GATC 6 cut(s) 29, 90, 255, 288, 1161, 1392
MbiI CCGCTC 1 cut(s) 992
MboI GATC 6 cut(s) 27, 88, 253, 286, 1159, 1390
MfeI CAATTG 2 cut(s) 405, 885
MflI RGATCY 1 cut(s) 1159
MhlI GDGCHC 3 cut(s) 478, 817, 1389
Mly113I GGCGCC 1 cut(s) 500
MlyI GAGTC 1 cut(s) 644
MroXI GAANNNNTTC 1 cut(s) 744
MseI TTAA 5 cut(s) 369, 443, 495, 761, 1248
MspI CCGG 3 cut(s) 356, 555, 608
MspR9I CCNGG 2 cut(s) 356, 608
MunI CAATTG 2 cut(s) 405, 885
Mva1269I GAATGC 3 cut(s) 249, 874, 1281
NarI GGCGCC 1 cut(s) 500
NciI CCSGG 2 cut(s) 356, 608
NdeII GATC 6 cut(s) 27, 88, 253, 286, 1159, 1390
NlaIII CATG 6 cut(s) 95, 151, 1196, 1315, 1350, 1374
NlaIV GGNNCC 3 cut(s) 501, 1161, 1401
NmeAIII GCCGAG 1 cut(s) 445
NmuCI GTSAC 2 cut(s) 280, 1340
NspI RCATGY 1 cut(s) 1196
PaeI GCATGC 1 cut(s) 1196
PaeR7I CTCGAG 1 cut(s) 681
PagI TCATGA 1 cut(s) 91
PaqCI CACCTGC 1 cut(s) 1037
PctI GAATGC 3 cut(s) 249, 874, 1281
PdmI GAANNNNTTC 1 cut(s) 744
PfeI GAWTC 2 cut(s) 4, 1258
PkrI GCNGC 8 cut(s) 112, 883, 917, 920, 1117, 1198, 1335, 1352
PleI GAGTC 1 cut(s) 644
PluTI GGCGCC 1 cut(s) 503
PpsI GAGTC 1 cut(s) 644
PpuMI RGGWCCY 1 cut(s) 1135
Psp5II RGGWCCY 1 cut(s) 1135
PspFI CCCAGC 1 cut(s) 1148
PspN4I GGNNCC 3 cut(s) 501, 1161, 1401
PspPI GGNCC 3 cut(s) 46, 605, 1135
PspPPI RGGWCCY 1 cut(s) 1135
PsrI GAACNNNNNNTAC 4 cut(s) 137, 169, 1062, 1094
PstI CTGCAG 3 cut(s) 43, 115, 807
PsuI RGATCY 1 cut(s) 1159
RsaI GTAC 1 cut(s) 1103
RsaNI GTAC 1 cut(s) 1102
SaqAI TTAA 5 cut(s) 369, 443, 495, 761, 1248
SatI GCNGC 8 cut(s) 111, 882, 916, 919, 1116, 1197, 1334, 1351
Sau3AI GATC 6 cut(s) 27, 88, 253, 286, 1159, 1390
Sau96I GGNCC 3 cut(s) 46, 605, 1135
SchI GAGTC 1 cut(s) 644
ScrFI CCNGG 2 cut(s) 356, 608
SduI GDGCHC 3 cut(s) 478, 817, 1389
SfaNI GCATC 4 cut(s) 850, 1208, 1219, 1320
SfcI CTRYAG 3 cut(s) 39, 111, 803
SfoI GGCGCC 1 cut(s) 501
Sfr274I CTCGAG 1 cut(s) 681
SinI GGWCC 1 cut(s) 1135
SlaI CTCGAG 1 cut(s) 681
SmlI CTYRAG 1 cut(s) 681
SmoI CTYRAG 1 cut(s) 681
SphI GCATGC 1 cut(s) 1196
SsiI CCGC 4 cut(s) 305, 992, 1334, 1351
SspDI GGCGCC 1 cut(s) 499
SspI AATATT 1 cut(s) 999
SspMI CTAG 1 cut(s) 50
StyD4I CCNGG 2 cut(s) 354, 606
StyI CCWWGG 2 cut(s) 876, 1280
TaaI ACNGT 2 cut(s) 139, 565
TaqI TCGA 6 cut(s) 30, 289, 682, 935, 1242, 1389
TauI GCSGC 2 cut(s) 1336, 1353
TfiI GAWTC 2 cut(s) 4, 1258
Tru1I TTAA 5 cut(s) 369, 443, 495, 761, 1248
Tru9I TTAA 5 cut(s) 369, 443, 495, 761, 1248
TscAI CASTG 7 cut(s) 48, 144, 289, 393, 483, 663, 1066
TseFI GTSAC 2 cut(s) 280, 1340
TseI GCWGC 6 cut(s) 110, 881, 915, 918, 1115, 1196
Tsp45I GTSAC 2 cut(s) 280, 1340
TspDTI ATGAA 5 cut(s) 17, 108, 780, 987, 1157
TspGWI ACGGA 2 cut(s) 230, 1119
TspRI CASTG 7 cut(s) 48, 144, 289, 393, 483, 663, 1066
VneI GTGCAC 1 cut(s) 474
VpaK11BI GGWCC 1 cut(s) 1135
XapI RAATTY 1 cut(s) 743
XceI RCATGY 1 cut(s) 1196
XhoI CTCGAG 1 cut(s) 681
XmiI GTMKAC 1 cut(s) 212
XmnI GAANNNNTTC 1 cut(s) 744
XspI CTAG 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.