Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0011473

Physical Location & Seq

Genomic Coordinates Reverse (-)

6242190 .. 6246299

Gene Structure 4110 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00004550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGCAGCAGAAGCTTGACAGTCTATGCGCACAGATAAGTAACATAAAGGACCACTCTGGAACTGTGACTCCAATGAAGAACATAGAATTGCAATCCAATGAAGAGTTTGGTTGTGCTAAAATCAAATTTGTTGATTGCGGTTGTTGGCTTTGTGATCAACATCGTGATCTTTCTGATGGTCTGGTGGGTAATAATGATATGAAAGGATCCAATGGGTATGAGATGCTACAATATAAAATGTCTCTCGAGCATGTTGTAGCAGAGCAAGAGGAGCGCCGCATGTCTGATTTATCAGACATGGCATCAAGTGTCACATCTGCTGCTGACTTCCAGCTGAACAGCTTAGCTATTGAACAAGACATGCACAATCTCAGAAGGGATTGTCAAGAGAAAGATGGGACCATAAGGGAGCTAACCTCTTTGCTCCACTCATCTGAAACTGCTGGTTCAAAGAGGATTGCAGAGTTGGAGGATGTAATACGTAGGAAAAACTCTATAATTACAAGACTAAAGAGGGACATGGCGGTTTTAGAGCAGAAGGTAGTACACCATGCAAGGCTTCGGAGATCCTCGTACTCTTCTTCTTCCTCAGATGATGCAGACTTCGCAGACCATCTTCCAAAAGTTCCACACATGGCAGACAATCTTCTTTATGATATGGATAGTACTACTAGCCCTTCTTCTTCCGATTCAGATAGTTCCTCTCCTGTGAACCGAGCTTGTGCTCCTGTTTCTAGAACTCCAGAGATTGCTAAAACTCTAGAGACTTCTTCTCAGACTTTTGAGTCTGCTTCAATAGGCCAGAAATCAGTGCCAGAAAAGGTCTCAATTTCTATGGTGGAACAACCATCTAGCTGGCGCACATCAGTGTCTCCTTTGAAAGAGATAACTATGAATTCAAGGCATTTACGATCAGTGAGCACAAAATCTCGACCAGTGAGTCCAAGATGGCAGCCATTGAGTCCAAGGTCCCAACCAGCAAGTCCCTTATCCCCCTTTTCAAAAAGACCTCAACCTGCAAGTCCAAGTTCCCGACCAGCAAGTCCCTTCTCCCCCTTACCAAAAAAATCTCAGCCAGCCAGTTCTATAAAAAAATCCAGTACATCACAAACTTCAAGGCCAAGGCAGTTATCAGCTAGTGGGGATTCAAAAATGAGTAAAAGGCGTTCTCTGCCTCAACGAAAGGAATCAAAGGATGCTACTCCACATAAGAGATGGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

407

Amino Acids

45.14

Weight (kDa)

9.22

Isoelectric Point (pI)

89.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12930
fragaria_vesca	FvH4_3g43290 FvH4_3g43290 FvH4_3g43290 FvH4_3g43290
malus_domestica	MD11G1028000.v1.1
prunus_persica	Prupe.6G022100_v2.0.a1 Prupe.6G022100_v2.0.a1
pyrus_communis	pycom03g01970 pycom11g02160
rosa_chinensis	RchiOBHm_Chr5g0077351
rosa_laevigata	RLG00000036690
rosa_multiflora	Rmu_sc0005942.1_g000002
rosa_roxburghii	Rroxscaffold_1G00004550
rosa_rugosa	Rorug05G0454400
rosa_samantha	Rh5AG509300 Rh5BG530800 Rh5CG555100 Rh5DG543000
rosa_wichuraiana	Rw5G046820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	784, 939, 1041
Acc16I	TGCGCA	1 cut(s)	28
Acc36I	ACCTGC	1 cut(s)	1024
AciI	CCGC	3 cut(s)	138, 277, 524
AclWI	GGATC	3 cut(s)	201, 214, 561
AcsI	RAATTY	2 cut(s)	125, 895
AfaI	GTAC	4 cut(s)	546, 575, 667, 1102
AgsI	TTSAA	8 cut(s)	353, 450, 795, 880, 900, 1002, 1116, 1149
AleI	CACNNNNGTG	1 cut(s)	866
AloI	GAACNNNNNNTCC	2 cut(s)	52, 84
AluBI	AGCT	8 cut(s)	13, 334, 342, 347, 412, 719, 855, 1136
AluI	AGCT	8 cut(s)	13, 334, 342, 347, 412, 719, 855, 1136
Alw21I	GWGCWC	2 cut(s)	727, 923
Alw26I	GTCTC	4 cut(s)	246, 758, 829, 876
AlwI	GGATC	3 cut(s)	201, 214, 561
Ama87I	CYCGRG	1 cut(s)	245
AoxI	GGCC	2 cut(s)	799, 1118
ApeKI	GCWGC	3 cut(s)	4, 320, 952
ApoI	RAATTY	2 cut(s)	125, 895
AspLEI	GCGC	3 cut(s)	29, 276, 861
AspS9I	GGNCC	3 cut(s)	49, 399, 969
AvaI	CYCGRG	1 cut(s)	245
AvaII	GGWCC	3 cut(s)	49, 399, 969
BamHI	GGATCC	1 cut(s)	206
Bbv12I	GWGCWC	2 cut(s)	727, 923
BbvI	GCAGC	3 cut(s)	16, 307, 964
BccI	CCATC	6 cut(s)	170, 389, 621, 856, 942, 1209
BclI	TGATCA	1 cut(s)	154
BcoDI	GTCTC	4 cut(s)	246, 758, 829, 876
BfaI	CTAG	5 cut(s)	672, 735, 761, 852, 1137
BfoI	RGCGCY	1 cut(s)	277
BfuAI	ACCTGC	1 cut(s)	1024
BisI	GCNGC	4 cut(s)	5, 277, 321, 953
BlpI	GCTNAGC	1 cut(s)	343
BlsI	GCNGC	4 cut(s)	6, 278, 322, 954
BmcAI	AGTACT	1 cut(s)	667
Bme18I	GGWCC	3 cut(s)	49, 399, 969
BmeT110I	CYCGRG	1 cut(s)	245
BmgT120I	GGNCC	3 cut(s)	49, 399, 969
BmiI	GGNNCC	3 cut(s)	208, 400, 971
BmsI	GCATC	4 cut(s)	213, 311, 586, 1186
BplI	GAGNNNNNCTC	2 cut(s)	401, 433
BpmI	CTGGAG	1 cut(s)	726
Bpu1102I	GCTNAGC	1 cut(s)	343
BsaAI	YACGTR	1 cut(s)	482
BsaBI	GATNNNNATC	1 cut(s)	159
BsaI	GGTCTC	1 cut(s)	829
BsaJI	CCNNGG	2 cut(s)	965, 1121
BsaXI	ACNNNNNCTCC	2 cut(s)	52, 82
Bse1I	ACTGG	3 cut(s)	935, 1080, 1098
Bse8I	GATNNNNATC	1 cut(s)	159
BseDI	CCNNGG	2 cut(s)	965, 1121
BseGI	GGATG	2 cut(s)	478, 1201
BseJI	GATNNNNATC	1 cut(s)	159
BseMII	CTCAG	4 cut(s)	385, 603, 788, 1085
BseNI	ACTGG	3 cut(s)	935, 1080, 1098
BseRI	GAGGAG	1 cut(s)	284
BseXI	GCAGC	3 cut(s)	16, 307, 964
BshFI	GGCC	2 cut(s)	801, 1120
BsiHKAI	GWGCWC	2 cut(s)	727, 923
BsiHKCI	CYCGRG	1 cut(s)	245
BslFI	GGGAC	5 cut(s)	412, 530, 955, 969, 1029
BsmAI	GTCTC	4 cut(s)	246, 758, 829, 876
BsmFI	GGGAC	5 cut(s)	412, 530, 955, 969, 1029
BsnI	GGCC	2 cut(s)	801, 1120
Bso31I	GGTCTC	1 cut(s)	829
BsoBI	CYCGRG	1 cut(s)	245
Bsp1286I	GDGCHC	2 cut(s)	727, 923
Bsp143I	GATC	5 cut(s)	154, 166, 206, 566, 911
Bsp1720I	GCTNAGC	1 cut(s)	343
BspACI	CCGC	3 cut(s)	138, 277, 524
BspANI	GGCC	2 cut(s)	801, 1120
BspCNI	CTCAG	4 cut(s)	384, 602, 787, 1084
BspLI	GGNNCC	3 cut(s)	208, 400, 971
BspMI	ACCTGC	1 cut(s)	1024
BspPI	GGATC	3 cut(s)	201, 214, 561
BspTNI	GGTCTC	1 cut(s)	829
BsrI	ACTGG	3 cut(s)	935, 1080, 1098
BssECI	CCNNGG	2 cut(s)	965, 1121
BssMI	GATC	5 cut(s)	154, 166, 206, 566, 911
BssT1I	CCWWGG	2 cut(s)	965, 1121
Bst4CI	ACNGT	2 cut(s)	20, 64
Bst6I	CTCTTC	2 cut(s)	96, 583
BstBAI	YACGTR	1 cut(s)	482
BstC8I	GCNNGC	2 cut(s)	857, 1077
BstDEI	CTNAG	6 cut(s)	343, 371, 589, 774, 1071, 1221
BstF5I	GGATG	2 cut(s)	478, 1201
BstH2I	RGCGCY	1 cut(s)	277
BstHHI	GCGC	3 cut(s)	29, 276, 861
BstKTI	GATC	5 cut(s)	157, 169, 209, 569, 914
BstMAI	GTCTC	4 cut(s)	246, 758, 829, 876
BstMBI	GATC	5 cut(s)	154, 166, 206, 566, 911
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 271, 605, 1171
BstNSI	RCATGY	3 cut(s)	254, 283, 364
BstSNI	TACGTA	1 cut(s)	482
BstV1I	GCAGC	3 cut(s)	16, 307, 964
BstX2I	RGATCY	2 cut(s)	206, 566
BstXI	CCANNNNNNTGG	1 cut(s)	855
BstYI	RGATCY	2 cut(s)	206, 566
BsuRI	GGCC	2 cut(s)	801, 1120
BtsCI	GGATG	2 cut(s)	478, 1201
BtsIMutI	CAGTG	4 cut(s)	816, 873, 921, 942
BveI	ACCTGC	1 cut(s)	1024
Cac8I	GCNNGC	2 cut(s)	857, 1077
CfoI	GCGC	3 cut(s)	29, 276, 861
Cfr13I	GGNCC	3 cut(s)	49, 399, 969
Csp6I	GTAC	4 cut(s)	545, 574, 666, 1101
CviAII	CATG	7 cut(s)	251, 280, 298, 361, 520, 551, 634
CviQI	GTAC	4 cut(s)	545, 574, 666, 1101
DdeI	CTNAG	6 cut(s)	343, 371, 589, 774, 1071, 1221
DpnI	GATC	5 cut(s)	156, 168, 208, 568, 913
DpnII	GATC	5 cut(s)	154, 166, 206, 566, 911
DrdI	GACNNNNNNGTC	3 cut(s)	784, 939, 1041
DseDI	GACNNNNNNGTC	3 cut(s)	784, 939, 1041
Eam1104I	CTCTTC	2 cut(s)	96, 583
EarI	CTCTTC	2 cut(s)	96, 583
Eco105I	TACGTA	1 cut(s)	482
Eco130I	CCWWGG	2 cut(s)	965, 1121
Eco31I	GGTCTC	1 cut(s)	829
Eco47I	GGWCC	3 cut(s)	49, 399, 969
Eco88I	CYCGRG	1 cut(s)	245
EcoO109I	RGGNCCY	1 cut(s)	969
EcoRI	GAATTC	1 cut(s)	895
EcoT14I	CCWWGG	2 cut(s)	965, 1121
ErhI	CCWWGG	2 cut(s)	965, 1121
FaeI	CATG	7 cut(s)	254, 283, 301, 364, 523, 554, 637
FaqI	GGGAC	5 cut(s)	412, 530, 955, 969, 1029
FatI	CATG	7 cut(s)	250, 279, 297, 360, 519, 550, 633
FbaI	TGATCA	1 cut(s)	154
Fnu4HI	GCNGC	4 cut(s)	5, 277, 321, 953
FokI	GGATG	2 cut(s)	485, 1208
Fsp4HI	GCNGC	4 cut(s)	5, 277, 321, 953
FspAI	RTGCGCAY	1 cut(s)	28
FspBI	CTAG	5 cut(s)	672, 735, 761, 852, 1137
FspI	TGCGCA	1 cut(s)	28
GlaI	GCGC	3 cut(s)	28, 275, 860
GluI	GCNGC	4 cut(s)	5, 277, 321, 953
GsuI	CTGGAG	1 cut(s)	726
HaeII	RGCGCY	1 cut(s)	277
HaeIII	GGCC	2 cut(s)	801, 1120
HhaI	GCGC	3 cut(s)	29, 276, 861
Hin1II	CATG	7 cut(s)	254, 283, 301, 364, 523, 554, 637
Hin6I	GCGC	3 cut(s)	27, 274, 859
HinP1I	GCGC	3 cut(s)	27, 274, 859
HindIII	AAGCTT	1 cut(s)	11
HinfI	GANTC	7 cut(s)	67, 689, 785, 940, 961, 1145, 1187
Hpy166II	GTNNAC	2 cut(s)	547, 712
Hpy188III	TCNNGA	9 cut(s)	57, 164, 245, 386, 735, 743, 761, 930, 1032
Hpy8I	GTNNAC	2 cut(s)	547, 712
HpyAV	CCTTC	4 cut(s)	369, 532, 687, 1057
HpyCH4III	ACNGT	2 cut(s)	20, 64
HpyCH4IV	ACGT	1 cut(s)	481
HpyCH4V	TGCA	7 cut(s)	4, 91, 364, 461, 554, 599, 1019
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 271, 605, 1171
HpyF3I	CTNAG	6 cut(s)	343, 371, 589, 774, 1071, 1221
HpySE526I	ACGT	1 cut(s)	481
Hsp92II	CATG	7 cut(s)	254, 283, 301, 364, 523, 554, 637
HspAI	GCGC	3 cut(s)	27, 274, 859
Ksp22I	TGATCA	1 cut(s)	154
Kzo9I	GATC	5 cut(s)	154, 166, 206, 566, 911
LmnI	GCTCC	4 cut(s)	271, 409, 429, 730
Lsp1109I	GCAGC	3 cut(s)	16, 307, 964
LweI	GCATC	4 cut(s)	213, 311, 586, 1186
MaeI	CTAG	5 cut(s)	672, 735, 761, 852, 1137
MaeII	ACGT	1 cut(s)	481
MaeIII	GTNAC	3 cut(s)	38, 64, 310
MalI	GATC	5 cut(s)	156, 168, 208, 568, 913
MboI	GATC	5 cut(s)	154, 166, 206, 566, 911
MflI	RGATCY	2 cut(s)	206, 566
MhlI	GDGCHC	2 cut(s)	727, 923
MluCI	AATT	5 cut(s)	86, 125, 498, 828, 895
MlyI	GAGTC	4 cut(s)	61, 794, 949, 970
MmeI	TCCRAC	1 cut(s)	447
MslI	CAYNNNNRTG	1 cut(s)	866
MspA1I	CMGCKG	1 cut(s)	334
MwoI	GCNNNNNNNGC	4 cut(s)	10, 271, 605, 1171
NdeII	GATC	5 cut(s)	154, 166, 206, 566, 911
NlaIII	CATG	7 cut(s)	254, 283, 301, 364, 523, 554, 637
NlaIV	GGNNCC	3 cut(s)	208, 400, 971
NmuCI	GTSAC	2 cut(s)	64, 310
NsbI	TGCGCA	1 cut(s)	28
NspI	RCATGY	3 cut(s)	254, 283, 364
OliI	CACNNNNGTG	1 cut(s)	866
PaeR7I	CTCGAG	1 cut(s)	245
PfeI	GAWTC	3 cut(s)	689, 1145, 1187
PkrI	GCNGC	4 cut(s)	6, 278, 322, 954
PleI	GAGTC	4 cut(s)	61, 793, 948, 969
PpsI	GAGTC	4 cut(s)	61, 793, 948, 969
Ppu21I	YACGTR	1 cut(s)	482
PpuMI	RGGWCCY	1 cut(s)	969
Psp5II	RGGWCCY	1 cut(s)	969
PspN4I	GGNNCC	3 cut(s)	208, 400, 971
PspPI	GGNCC	3 cut(s)	49, 399, 969
PspPPI	RGGWCCY	1 cut(s)	969
PsrI	GAACNNNNNNTAC	2 cut(s)	1150, 1182
PsuI	RGATCY	2 cut(s)	206, 566
PvuII	CAGCTG	1 cut(s)	334
RsaI	GTAC	4 cut(s)	546, 575, 667, 1102
RsaNI	GTAC	4 cut(s)	545, 574, 666, 1101
RseI	CAYNNNNRTG	1 cut(s)	866
SatI	GCNGC	4 cut(s)	5, 277, 321, 953
Sau3AI	GATC	5 cut(s)	154, 166, 206, 566, 911
Sau96I	GGNCC	3 cut(s)	49, 399, 969
ScaI	AGTACT	1 cut(s)	667
SchI	GAGTC	4 cut(s)	61, 794, 949, 970
SduI	GDGCHC	2 cut(s)	727, 923
SfaNI	GCATC	4 cut(s)	213, 311, 586, 1186
Sfr274I	CTCGAG	1 cut(s)	245
SinI	GGWCC	3 cut(s)	49, 399, 969
SlaI	CTCGAG	1 cut(s)	245
SmiMI	CAYNNNNRTG	1 cut(s)	866
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
SnaBI	TACGTA	1 cut(s)	482
Sse9I	AATT	5 cut(s)	86, 125, 498, 828, 895
SsiI	CCGC	3 cut(s)	138, 277, 524
SspMI	CTAG	5 cut(s)	672, 735, 761, 852, 1137
StyI	CCWWGG	2 cut(s)	965, 1121
TaaI	ACNGT	2 cut(s)	20, 64
TaiI	ACGT	1 cut(s)	484
TaqI	TCGA	2 cut(s)	246, 931
TasI	AATT	5 cut(s)	86, 125, 498, 828, 895
TatI	WGTACW	3 cut(s)	544, 665, 1100
TauI	GCSGC	1 cut(s)	279
TfiI	GAWTC	3 cut(s)	689, 1145, 1187
TscAI	CASTG	4 cut(s)	816, 873, 921, 942
TseFI	GTSAC	2 cut(s)	64, 310
TseI	GCWGC	3 cut(s)	4, 320, 952
Tsp45I	GTSAC	2 cut(s)	64, 310
TspDTI	ATGAA	4 cut(s)	89, 114, 215, 908
TspRI	CASTG	4 cut(s)	816, 873, 921, 942
VpaK11BI	GGWCC	3 cut(s)	49, 399, 969
XapI	RAATTY	2 cut(s)	125, 895
XbaI	TCTAGA	2 cut(s)	734, 760
XceI	RCATGY	3 cut(s)	254, 283, 364
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1212
XhoI	CTCGAG	1 cut(s)	245
XspI	CTAG	5 cut(s)	672, 735, 761, 852, 1137
ZrmI	AGTACT	1 cut(s)	667

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.