Rorug05G0454400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0011473
Physical Location & Seq
Forward (+)
62799004 .. 62801858
2855 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0454400.1

Sequence Viewer

Length: 1389 bp
ATGGTGGTTTCTTACGGTGGTTATGGTGGTGGTGGATCTTGTTCGCCATTTTCATCGACGGCCCAGATTACACAACCCAAAGAGGCTTCAGAAGAACCTGCGAAAGTCAAGGAAGAAGAAGAGGCAGTGAATTGTAAAGGTGGTAGTTTTGATGGGTCATCTGCTTCTTCATCTTCCTCCACCGCTTCACCAAAGCTCACAGAGGAAGTGGAGGAACCAAACAAGGCCGTGGAATTAGCGAAACCAGAGGTGGTCCAAATCAAAGCAGAGAGCATAGAGTTTGTGGTGGATGATTATGATGGTAGAGATTGCTTCAATTGTGGTAGTGGTAGTAATATTAATGGATCATATTCTTCTTCTTCTTCAAAGGTGTTGCCCAAGCCCATGGAGTGTTTGCTCGAAACAGGGCCGCCACCTTTTCTCAACAAGACATTTCAGATGGTGGACGACCCGGAAACCGACCTGATTGTGTCGTGGAGCGAAGCTCGCCAAAGCTTCATTGTTTGGGACTGCCATGAGTTCTCCAAGACCCTATTGCCTAAGTACTTCAAGCACAGCAATTTCTCAAGCTTCATTCGCCAGCTCAACACTTATGGATTCAAGAAGGTTGATCCGGATAGGTGGGAGTTTGCAAATGAAGGGTTTCAAGGAGGGAACAAGCACTTGCTGAAAAGCATAAAGAGAAGAAGCAGATACAACAAGCAGCCACAAGGAAGCAATGTCTCAGCTAATTCAACCAAAAAAGCCGGGTTAGAAGTCCAACTCGAAACGCTGAAGAAGGATCAAGACGTACTGAAACTCGAAATCTTGAATCTCAAACAGCAACAGAAGTACTCGCAGCATCAGCTGACTGCTGTCGAAGAGAGGATTCGAAGTTCTGAGTGTAAGCAGTTCCTCACCAAGACAACAAGGAAACCCAATTTTGTGGAGCAGCTAATGCAGAAAAGAGCGTTGAAGAGAGAGCTCGAGGGGGGCAATTTAGGAAAGAGAAGGAGGTTACTTTCAGCCCAAGGTTTTGAAGATTTTGGTGATTGTGGAGACCAAGTTCAAGTCTTGGCTGGGCAATTGCCGGAAGTAGTGGTTCCTCAACAGCAAGAAACCCCATTGCCAGCTTCCGTGGTTGATAAATCATGTAGTTCGCTTCAAAATAATAAGCCACAGGCAGAAGTGCACTTTGTTTACCATGATATGTCCGAGAAATTGCTCCAAGAGAATTCAGTTTTTGATGATGAATATGCAGTCAATGACTCAAACTTTTACCAGGAATTGGAGGATTTAATTACCGGGCCACACGACTTTCATGATTTGGTTGTCAAGCCACGTGATTGGAGTGGATATGTTAGTAACTGCTTGGTTGAACAAGCTGGTAGTGTTGGATCAATGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

462

Amino Acids

51.52

Weight (kDa)

5.3

Isoelectric Point (pI)

58.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSF_DNA-bind PF00447 140 - 229 2.8e-29 HSF-type DNA-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011473)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G12930
fragaria_vesca FvH4_3g43290 FvH4_3g43290 FvH4_3g43290 FvH4_3g43290
malus_domestica MD11G1028000.v1.1
prunus_persica Prupe.6G022100_v2.0.a1 Prupe.6G022100_v2.0.a1
pyrus_communis pycom03g01970 pycom11g02160
rosa_chinensis RchiOBHm_Chr5g0077351
rosa_laevigata RLG00000036690
rosa_multiflora Rmu_sc0005942.1_g000002
rosa_roxburghii Rroxscaffold_1G00004550
rosa_rugosa Rorug05G0454400
rosa_samantha Rh5AG509300 Rh5BG530800 Rh5CG555100 Rh5DG543000
rosa_wichuraiana Rw5G046820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 106
AccB7I CCANNNNNTGG 1 cut(s) 1267
AccIII TCCGGA 1 cut(s) 613
AciI CCGC 2 cut(s) 183, 410
AclWI GGATC 5 cut(s) 43, 352, 605, 789, 1384
AcsI RAATTY 1 cut(s) 1213
AcuI CTGAAG 2 cut(s) 72, 794
AcvI CACGTG 1 cut(s) 1322
AfaI GTAC 3 cut(s) 545, 792, 833
AfiI CCNNNNNNNGG 1 cut(s) 1267
AjnI CCWGG 1 cut(s) 1260
AloI GAACNNNNNNTCC 4 cut(s) 859, 891, 1029, 1061
Alw21I GWGCWC 2 cut(s) 966, 1173
Alw26I GTCTC 2 cut(s) 727, 1032
Alw44I GTGCAC 1 cut(s) 1169
AlwI GGATC 5 cut(s) 43, 352, 605, 789, 1384
Ama87I CYCGRG 1 cut(s) 965
Aor13HI TCCGGA 1 cut(s) 613
AoxI GGCC 4 cut(s) 60, 225, 407, 1286
ApaLI GTGCAC 1 cut(s) 1169
ApeKI GCWGC 3 cut(s) 703, 838, 931
ApoI RAATTY 1 cut(s) 1213
AseI ATTAAT 1 cut(s) 339
Asp700I GAANNNNTTC 1 cut(s) 642
AspS9I GGNCC 4 cut(s) 61, 253, 407, 1286
AsuC2I CCSGG 3 cut(s) 452, 748, 1285
AsuHPI GGTGA 3 cut(s) 180, 889, 1040
AsuII TTCGAA 1 cut(s) 871
AvaI CYCGRG 1 cut(s) 965
AvaII GGWCC 1 cut(s) 253
BaeGI GKGCMC 1 cut(s) 1173
BanII GRGCYC 1 cut(s) 966
BbrPI CACGTG 1 cut(s) 1322
Bbv12I GWGCWC 2 cut(s) 966, 1173
BbvI GCAGC 3 cut(s) 715, 850, 943
BccI CCATC 3 cut(s) 146, 293, 433
BceAI ACGGC 2 cut(s) 75, 212
BciT130I CCWGG 1 cut(s) 1262
BcnI CCSGG 3 cut(s) 452, 748, 1285
BcoDI GTCTC 2 cut(s) 727, 1032
BfuAI ACCTGC 1 cut(s) 106
BisI GCNGC 4 cut(s) 410, 704, 839, 932
BlsI GCNGC 4 cut(s) 411, 705, 840, 933
BmcAI AGTACT 2 cut(s) 545, 833
Bme1390I CCNGG 4 cut(s) 452, 748, 1262, 1285
Bme18I GGWCC 1 cut(s) 253
BmeT110I CYCGRG 1 cut(s) 965
BmgT120I GGNCC 4 cut(s) 61, 253, 407, 1286
BmiI GGNNCC 2 cut(s) 216, 1083
BmrFI CCNGG 4 cut(s) 452, 748, 1262, 1285
BmsI GCATC 1 cut(s) 850
BoxI GACNNNNGTC 1 cut(s) 854
BplI GAGNNNNNCTC 2 cut(s) 469, 501
Bpu14I TTCGAA 1 cut(s) 871
BpuEI CTTGAG 1 cut(s) 550
BpuMI CCSGG 3 cut(s) 452, 748, 1285
BsaAI YACGTR 1 cut(s) 1322
BsaI GGTCTC 1 cut(s) 1032
BsaJI CCNNGG 4 cut(s) 228, 384, 1009, 1116
BsaWI WCCGGW 1 cut(s) 613
BsaXI ACNNNNNCTCC 2 cut(s) 1029, 1059
Bsc4I CCNNNNNNNGG 1 cut(s) 1267
Bse3DI GCAATG 2 cut(s) 724, 1103
BseAI TCCGGA 1 cut(s) 613
BseBI CCWGG 1 cut(s) 1262
BseDI CCNNGG 4 cut(s) 228, 384, 1009, 1116
BseGI GGATG 1 cut(s) 295
BseLI CCNNNNNNNGG 1 cut(s) 1267
BseMI GCAATG 2 cut(s) 724, 1103
BseMII CTCAG 2 cut(s) 738, 870
BseSI GKGCMC 1 cut(s) 1173
BseXI GCAGC 3 cut(s) 715, 850, 943
BseYI CCCAGC 1 cut(s) 1058
BshFI GGCC 4 cut(s) 62, 227, 409, 1288
BsiHKAI GWGCWC 2 cut(s) 966, 1173
BsiHKCI CYCGRG 1 cut(s) 965
BsiSI CCGG 5 cut(s) 452, 614, 747, 1070, 1284
BslFI GGGAC 1 cut(s) 521
BslI CCNNNNNNNGG 1 cut(s) 1267
BsmAI GTCTC 2 cut(s) 727, 1032
BsmFI GGGAC 1 cut(s) 521
BsnI GGCC 4 cut(s) 62, 227, 409, 1288
Bso31I GGTCTC 1 cut(s) 1032
BsoBI CYCGRG 1 cut(s) 965
Bsp119I TTCGAA 1 cut(s) 871
Bsp1286I GDGCHC 2 cut(s) 966, 1173
Bsp13I TCCGGA 1 cut(s) 613
Bsp143I GATC 5 cut(s) 35, 344, 610, 781, 1376
Bsp19I CCATGG 1 cut(s) 384
BspACI CCGC 2 cut(s) 183, 410
BspANI GGCC 4 cut(s) 62, 227, 409, 1288
BspCNI CTCAG 2 cut(s) 737, 871
BspEI TCCGGA 1 cut(s) 613
BspHI TCATGA 1 cut(s) 1300
BspLI GGNNCC 2 cut(s) 216, 1083
BspMI ACCTGC 1 cut(s) 106
BspPI GGATC 5 cut(s) 43, 352, 605, 789, 1384
BspT104I TTCGAA 1 cut(s) 871
BspTNI GGTCTC 1 cut(s) 1032
BsrDI GCAATG 2 cut(s) 724, 1103
BssECI CCNNGG 4 cut(s) 228, 384, 1009, 1116
BssMI GATC 5 cut(s) 35, 344, 610, 781, 1376
BssT1I CCWWGG 2 cut(s) 384, 1009
Bst2UI CCWGG 1 cut(s) 1262
Bst4CI ACNGT 1 cut(s) 17
Bst6I CTCTTC 3 cut(s) 114, 855, 950
BstAPI GCANNNNNTGC 1 cut(s) 937
BstBAI YACGTR 1 cut(s) 1322
BstBI TTCGAA 1 cut(s) 871
BstC8I GCNNGC 3 cut(s) 487, 581, 1110
BstDEI CTNAG 3 cut(s) 540, 724, 879
BstDSI CCRYGG 3 cut(s) 228, 384, 1116
BstF5I GGATG 1 cut(s) 295
BstKTI GATC 5 cut(s) 38, 347, 613, 784, 1379
BstMAI GTCTC 2 cut(s) 727, 1032
BstMBI GATC 5 cut(s) 35, 344, 610, 781, 1376
BstMWI GCNNNNNNNGC 4 cut(s) 486, 576, 844, 937
BstNI CCWGG 1 cut(s) 1262
BstPAI GACNNNNGTC 1 cut(s) 854
BstSCI CCNGG 4 cut(s) 450, 746, 1260, 1283
BstSLI GKGCMC 1 cut(s) 1173
BstV1I GCAGC 3 cut(s) 715, 850, 943
BstX2I RGATCY 1 cut(s) 35
BstXI CCANNNNNNTGG 3 cut(s) 385, 925, 1326
BstYI RGATCY 1 cut(s) 35
BsuRI GGCC 4 cut(s) 62, 227, 409, 1288
BtgI CCRYGG 3 cut(s) 228, 384, 1116
BtsCI GGATG 1 cut(s) 295
BtsI GCAGTG 1 cut(s) 132
BtsIMutI CAGTG 1 cut(s) 132
BveI ACCTGC 1 cut(s) 106
Cac8I GCNNGC 3 cut(s) 487, 581, 1110
CciI TCATGA 1 cut(s) 1300
Cfr13I GGNCC 4 cut(s) 61, 253, 407, 1286
Csp6I GTAC 3 cut(s) 544, 791, 832
CviAII CATG 5 cut(s) 385, 515, 1131, 1184, 1301
CviQI GTAC 3 cut(s) 544, 791, 832
DdeI CTNAG 3 cut(s) 540, 724, 879
DpnI GATC 5 cut(s) 37, 346, 612, 783, 1378
DpnII GATC 5 cut(s) 35, 344, 610, 781, 1376
Eam1104I CTCTTC 3 cut(s) 114, 855, 950
EarI CTCTTC 3 cut(s) 114, 855, 950
Ecl136II GAGCTC 1 cut(s) 964
Eco130I CCWWGG 2 cut(s) 384, 1009
Eco24I GRGCYC 1 cut(s) 966
Eco31I GGTCTC 1 cut(s) 1032
Eco47I GGWCC 1 cut(s) 253
Eco53kI GAGCTC 1 cut(s) 964
Eco57I CTGAAG 2 cut(s) 72, 794
Eco72I CACGTG 1 cut(s) 1322
Eco88I CYCGRG 1 cut(s) 965
EcoICRI GAGCTC 1 cut(s) 964
EcoRI GAATTC 1 cut(s) 1213
EcoRII CCWGG 1 cut(s) 1260
EcoT14I CCWWGG 2 cut(s) 384, 1009
EcoT38I GRGCYC 1 cut(s) 966
ErhI CCWWGG 2 cut(s) 384, 1009
FaeI CATG 5 cut(s) 388, 518, 1134, 1187, 1304
FaqI GGGAC 1 cut(s) 521
FatI CATG 5 cut(s) 384, 514, 1130, 1183, 1300
Fnu4HI GCNGC 4 cut(s) 410, 704, 839, 932
FokI GGATG 1 cut(s) 302
FriOI GRGCYC 1 cut(s) 966
Fsp4HI GCNGC 4 cut(s) 410, 704, 839, 932
GluI GCNGC 4 cut(s) 410, 704, 839, 932
GsaI CCCAGC 1 cut(s) 1062
HaeIII GGCC 4 cut(s) 62, 227, 409, 1288
HapII CCGG 5 cut(s) 452, 614, 747, 1070, 1284
Hin1II CATG 5 cut(s) 388, 518, 1134, 1187, 1304
HindIII AAGCTT 2 cut(s) 493, 568
HinfI GANTC 4 cut(s) 597, 811, 868, 1247
HpaII CCGG 5 cut(s) 452, 614, 747, 1070, 1284
HphI GGTGA 3 cut(s) 180, 889, 1040
Hpy166II GTNNAC 3 cut(s) 445, 1171, 1180
Hpy188I TCNGA 4 cut(s) 91, 438, 880, 1195
Hpy188III TCNNGA 5 cut(s) 601, 614, 785, 808, 1301
Hpy8I GTNNAC 3 cut(s) 445, 1171, 1180
Hpy99I CGWCG 1 cut(s) 61
HpyAV CCTTC 4 cut(s) 598, 632, 772, 984
HpyCH4III ACNGT 1 cut(s) 17
HpyCH4IV ACGT 2 cut(s) 789, 1321
HpyCH4V TGCA 4 cut(s) 632, 940, 1171, 1238
HpyF10VI GCNNNNNNNGC 4 cut(s) 486, 576, 844, 937
HpyF3I CTNAG 3 cut(s) 540, 724, 879
HpySE526I ACGT 2 cut(s) 789, 1321
Hsp92II CATG 5 cut(s) 388, 518, 1134, 1187, 1304
Kpn2I TCCGGA 1 cut(s) 613
Kzo9I GATC 5 cut(s) 35, 344, 610, 781, 1376
LmnI GCTCC 3 cut(s) 477, 928, 1209
Lsp1109I GCAGC 3 cut(s) 715, 850, 943
LweI GCATC 1 cut(s) 850
MaeII ACGT 2 cut(s) 789, 1321
MaeIII GTNAC 2 cut(s) 996, 1343
MalI GATC 5 cut(s) 37, 346, 612, 783, 1378
MboI GATC 5 cut(s) 35, 344, 610, 781, 1376
MfeI CAATTG 2 cut(s) 316, 1064
MflI RGATCY 1 cut(s) 35
MhlI GDGCHC 2 cut(s) 966, 1173
MlyI GAGTC 1 cut(s) 1241
MmeI TCCRAC 2 cut(s) 784, 1354
MroI TCCGGA 1 cut(s) 613
MroXI GAANNNNTTC 1 cut(s) 642
MseI TTAA 2 cut(s) 339, 1277
MspA1I CMGCKG 1 cut(s) 847
MspI CCGG 5 cut(s) 452, 614, 747, 1070, 1284
MspR9I CCNGG 4 cut(s) 452, 748, 1262, 1285
MunI CAATTG 2 cut(s) 316, 1064
MvaI CCWGG 1 cut(s) 1262
MwoI GCNNNNNNNGC 4 cut(s) 486, 576, 844, 937
NciI CCSGG 3 cut(s) 452, 748, 1285
NcoI CCATGG 1 cut(s) 384
NdeII GATC 5 cut(s) 35, 344, 610, 781, 1376
NlaIII CATG 5 cut(s) 388, 518, 1134, 1187, 1304
NlaIV GGNNCC 2 cut(s) 216, 1083
NspV TTCGAA 1 cut(s) 871
PaeR7I CTCGAG 1 cut(s) 965
PagI TCATGA 1 cut(s) 1300
PdmI GAANNNNTTC 1 cut(s) 642
PfeI GAWTC 3 cut(s) 597, 811, 868
PflMI CCANNNNNTGG 1 cut(s) 1267
PkrI GCNGC 4 cut(s) 411, 705, 840, 933
PleI GAGTC 1 cut(s) 1241
PmaCI CACGTG 1 cut(s) 1322
PmlI CACGTG 1 cut(s) 1322
PpsI GAGTC 1 cut(s) 1241
Ppu21I YACGTR 1 cut(s) 1322
PshAI GACNNNNGTC 1 cut(s) 854
PshBI ATTAAT 1 cut(s) 339
Psp124BI GAGCTC 1 cut(s) 966
Psp6I CCWGG 1 cut(s) 1260
PspCI CACGTG 1 cut(s) 1322
PspFI CCCAGC 1 cut(s) 1058
PspGI CCWGG 1 cut(s) 1260
PspN4I GGNNCC 2 cut(s) 216, 1083
PspPI GGNCC 4 cut(s) 61, 253, 407, 1286
PspXI VCTCGAGB 1 cut(s) 965
PsuI RGATCY 1 cut(s) 35
PvuII CAGCTG 1 cut(s) 847
RsaI GTAC 3 cut(s) 545, 792, 833
RsaNI GTAC 3 cut(s) 544, 791, 832
SacI GAGCTC 1 cut(s) 966
SaqAI TTAA 2 cut(s) 339, 1277
SatI GCNGC 4 cut(s) 410, 704, 839, 932
Sau3AI GATC 5 cut(s) 35, 344, 610, 781, 1376
Sau96I GGNCC 4 cut(s) 61, 253, 407, 1286
ScaI AGTACT 2 cut(s) 545, 833
SchI GAGTC 1 cut(s) 1241
ScrFI CCNGG 4 cut(s) 452, 748, 1262, 1285
SduI GDGCHC 2 cut(s) 966, 1173
SfaNI GCATC 1 cut(s) 850
Sfr274I CTCGAG 1 cut(s) 965
SfuI TTCGAA 1 cut(s) 871
SinI GGWCC 1 cut(s) 253
SlaI CTCGAG 1 cut(s) 965
SmlI CTYRAG 2 cut(s) 565, 965
SmoI CTYRAG 2 cut(s) 565, 965
SsiI CCGC 2 cut(s) 183, 410
SspI AATATT 1 cut(s) 337
SstI GAGCTC 1 cut(s) 966
StyD4I CCNGG 4 cut(s) 450, 746, 1260, 1283
StyI CCWWGG 2 cut(s) 384, 1009
TaaI ACNGT 1 cut(s) 17
TaiI ACGT 2 cut(s) 792, 1324
TaqI TCGA 7 cut(s) 56, 399, 765, 801, 858, 871, 966
TatI WGTACW 2 cut(s) 543, 831
TauI GCSGC 1 cut(s) 412
TfiI GAWTC 3 cut(s) 597, 811, 868
Tru1I TTAA 2 cut(s) 339, 1277
Tru9I TTAA 2 cut(s) 339, 1277
TscAI CASTG 1 cut(s) 132
TseI GCWGC 3 cut(s) 703, 838, 931
TspDTI ATGAA 7 cut(s) 42, 159, 487, 562, 651, 1245, 1289
TspGWI ACGGA 1 cut(s) 1105
TspRI CASTG 1 cut(s) 132
Van91I CCANNNNNTGG 1 cut(s) 1267
VneI GTGCAC 1 cut(s) 1169
VpaK11BI GGWCC 1 cut(s) 253
VspI ATTAAT 1 cut(s) 339
XapI RAATTY 1 cut(s) 1213
XhoI CTCGAG 1 cut(s) 965
XmnI GAANNNNTTC 1 cut(s) 642
ZrmI AGTACT 2 cut(s) 545, 833
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.