Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0019071

Physical Location & Seq

Genomic Coordinates Reverse (-)

17317342 .. 17317776

Gene Structure 435 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00096100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGAGCATGAGGATAGACGGAGCACCATGGGGAAACATCCCACTTGATGTCATCACATCGATTGAAATCTCTTATCACGGCAAACTCAACATCCTTGCCCATCCAAATCGTGATTGCCCCGCAAAGAGTATCCACGAGTCGTCACAACCCCGCGATTCTGAAACCGATGTTAACAACAATATTGCTAAAGAGGGCTCCTCTGGAGGACATAAGGAGCTGCTGGGTGTAGCAAGCACTGATTCCAAACTTCCCATTGATGATAACAAGGCTAAAGACCACTCTGAAAGCCATAAGACGTTGGGTAATGTAGCAAGCAGTTCCAAAATCCCCAGTCATGATGGTAATGCTGAAGATTATTGCCATGAATGGCGTCATAAGAAGTTTGGTGCAGCAAGTACCTTCAAATACAATCCTGAAATTTGGGGGACGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001775 GO:0003674 GO:0003824 GO:0004143 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005886 GO:0006629 GO:0006793 GO:0006796 GO:0006950 GO:0007596 GO:0007599 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009611 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0030168 GO:0030258 GO:0030425 GO:0031974 GO:0031981 GO:0032501 GO:0032991 GO:0036477 GO:0042060 GO:0042995 GO:0043005 GO:0043197 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044255 GO:0044309 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044456 GO:0044463 GO:0044464 GO:0045202 GO:0046834 GO:0050817 GO:0050878 GO:0050896 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071944 GO:0097447 GO:0097458 GO:0098794 GO:0120025 GO:0120038

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 ko04070 ko04072 ko05231 map00561 map00564 map01100 map01110 map04070 map04072 map05231

Pfam Domains

Protein Families

DAGK_acc DAGK_cat

Protein Analysis

144

Amino Acids

15.73

Weight (kDa)

6.11

Isoelectric Point (pI)

55.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019071)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000020594
rosa_roxburghii	Rroxscaffold_2G00096100 Rroxscaffold_2G00101130
rosa_rugosa	Rorug02G0429800 Rorug02G0429900 Rorug02G0430000
rosa_samantha	Rh2AG490500 Rh2CG476900
rosa_wichuraiana	Rw0G020230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	431
AccII	CGCG	1 cut(s)	153
AciI	CCGC	2 cut(s)	120, 151
AcsI	RAATTY	1 cut(s)	417
AcuI	CTGAAG	1 cut(s)	369
AcyI	GRCGYC	2 cut(s)	370, 428
AfaI	GTAC	1 cut(s)	397
AgsI	TTSAA	2 cut(s)	65, 403
AluBI	AGCT	1 cut(s)	217
AluI	AGCT	1 cut(s)	217
Alw21I	GWGCWC	1 cut(s)	25
ApeKI	GCWGC	2 cut(s)	217, 389
ApoI	RAATTY	1 cut(s)	417
BanII	GRGCYC	1 cut(s)	197
BauI	CACGAG	1 cut(s)	134
Bbv12I	GWGCWC	1 cut(s)	25
BbvI	GCAGC	2 cut(s)	204, 401
BccI	CCATC	2 cut(s)	108, 332
BceAI	ACGGC	1 cut(s)	94
BciVI	GTATCC	1 cut(s)	140
BfuI	GTATCC	1 cut(s)	140
BisI	GCNGC	2 cut(s)	218, 390
BlsI	GCNGC	2 cut(s)	219, 391
BmiI	GGNNCC	1 cut(s)	196
BmrI	ACTGGG	1 cut(s)	324
BmuI	ACTGGG	1 cut(s)	324
BplI	GAGNNNNNCTC	2 cut(s)	182, 214
BpmI	CTGGAG	1 cut(s)	222
Bsa29I	ATCGAT	1 cut(s)	59
BsaBI	GATNNNNATC	1 cut(s)	65
BsaHI	GRCGYC	2 cut(s)	370, 428
BsaJI	CCNNGG	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	330
Bse8I	GATNNNNATC	1 cut(s)	65
BseCI	ATCGAT	1 cut(s)	59
BseDI	CCNNGG	1 cut(s)	26
BseGI	GGATG	3 cut(s)	36, 90, 100
BseJI	GATNNNNATC	1 cut(s)	65
BseNI	ACTGG	1 cut(s)	330
BseRI	GAGGAG	1 cut(s)	187
BseXI	GCAGC	2 cut(s)	204, 401
BseYI	CCCAGC	1 cut(s)	220
BsgI	GTGCAG	1 cut(s)	408
Bsh1236I	CGCG	1 cut(s)	153
BshVI	ATCGAT	1 cut(s)	59
BsiHKAI	GWGCWC	1 cut(s)	25
Bsp1286I	GDGCHC	2 cut(s)	25, 197
Bsp19I	CCATGG	1 cut(s)	26
BspACI	CCGC	2 cut(s)	120, 151
BspDI	ATCGAT	1 cut(s)	59
BspFNI	CGCG	1 cut(s)	153
BspHI	TCATGA	2 cut(s)	334, 431
BspLI	GGNNCC	1 cut(s)	196
BsrI	ACTGG	1 cut(s)	330
BssECI	CCNNGG	1 cut(s)	26
BssNI	GRCGYC	2 cut(s)	370, 428
BssSI	CACGAG	1 cut(s)	134
BssT1I	CCWWGG	1 cut(s)	26
Bst2BI	CACGAG	1 cut(s)	134
BstACI	GRCGYC	2 cut(s)	370, 428
BstC8I	GCNNGC	2 cut(s)	232, 313
BstDSI	CCRYGG	1 cut(s)	26
BstF5I	GGATG	3 cut(s)	36, 90, 100
BstFNI	CGCG	1 cut(s)	153
BstUI	CGCG	1 cut(s)	153
BstV1I	GCAGC	2 cut(s)	204, 401
Bsu15I	ATCGAT	1 cut(s)	59
BsuI	GTATCC	1 cut(s)	140
BsuTUI	ATCGAT	1 cut(s)	59
BtgI	CCRYGG	1 cut(s)	26
BtsCI	GGATG	3 cut(s)	36, 90, 100
BtsIMutI	CAGTG	1 cut(s)	234
Cac8I	GCNNGC	2 cut(s)	232, 313
CciI	TCATGA	2 cut(s)	334, 431
ClaI	ATCGAT	1 cut(s)	59
CseI	GACGC	1 cut(s)	359
Csp6I	GTAC	1 cut(s)	396
CviAII	CATG	5 cut(s)	7, 27, 335, 362, 432
CviJI	RGCY	4 cut(s)	195, 217, 269, 288
CviKI_1	RGCY	4 cut(s)	195, 217, 269, 288
CviQI	GTAC	1 cut(s)	396
Eco130I	CCWWGG	1 cut(s)	26
Eco24I	GRGCYC	1 cut(s)	197
Eco57I	CTGAAG	1 cut(s)	369
EcoT14I	CCWWGG	1 cut(s)	26
EcoT38I	GRGCYC	1 cut(s)	197
ErhI	CCWWGG	1 cut(s)	26
FaeI	CATG	5 cut(s)	10, 30, 338, 365, 435
FaiI	YATR	8 cut(s)	8, 28, 210, 291, 336, 363, 375, 433
FatI	CATG	5 cut(s)	6, 26, 334, 361, 431
FauI	CCCGC	2 cut(s)	127, 158
Fnu4HI	GCNGC	2 cut(s)	218, 390
FokI	GGATG	3 cut(s)	23, 77, 87
FriOI	GRGCYC	1 cut(s)	197
Fsp4HI	GCNGC	2 cut(s)	218, 390
GluI	GCNGC	2 cut(s)	218, 390
GsaI	CCCAGC	1 cut(s)	224
GsuI	CTGGAG	1 cut(s)	222
HgaI	GACGC	1 cut(s)	359
Hin1I	GRCGYC	2 cut(s)	370, 428
Hin1II	CATG	5 cut(s)	10, 30, 338, 365, 435
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HinfI	GANTC	3 cut(s)	137, 155, 239
HpaI	GTTAAC	1 cut(s)	172
Hpy166II	GTNNAC	1 cut(s)	172
Hpy188I	TCNGA	2 cut(s)	160, 283
Hpy188III	TCNNGA	5 cut(s)	110, 201, 335, 413, 432
Hpy8I	GTNNAC	1 cut(s)	172
HpyAV	CCTTC	1 cut(s)	409
HpyCH4IV	ACGT	2 cut(s)	296, 428
HpyCH4V	TGCA	1 cut(s)	389
HpySE526I	ACGT	2 cut(s)	296, 428
Hsp92I	GRCGYC	2 cut(s)	370, 428
Hsp92II	CATG	5 cut(s)	10, 30, 338, 365, 435
KspAI	GTTAAC	1 cut(s)	172
LmnI	GCTCC	3 cut(s)	20, 200, 214
LpnPI	CCDG	4 cut(s)	186, 206, 343, 426
Lsp1109I	GCAGC	2 cut(s)	204, 401
MaeII	ACGT	2 cut(s)	296, 428
MaeIII	GTNAC	1 cut(s)	141
MboII	GAAGA	1 cut(s)	362
MhlI	GDGCHC	2 cut(s)	25, 197
MluCI	AATT	1 cut(s)	417
MlyI	GAGTC	1 cut(s)	146
MnlI	CCTC	4 cut(s)	3, 184, 197, 208
MseI	TTAA	1 cut(s)	171
MvnI	CGCG	1 cut(s)	153
NcoI	CCATGG	1 cut(s)	26
NlaIII	CATG	5 cut(s)	10, 30, 338, 365, 435
NlaIV	GGNNCC	1 cut(s)	196
NmuCI	GTSAC	1 cut(s)	141
PagI	TCATGA	2 cut(s)	334, 431
PfeI	GAWTC	2 cut(s)	155, 239
PkrI	GCNGC	2 cut(s)	219, 391
PleI	GAGTC	1 cut(s)	145
PpsI	GAGTC	1 cut(s)	145
PspFI	CCCAGC	1 cut(s)	220
PspN4I	GGNNCC	1 cut(s)	196
RsaI	GTAC	1 cut(s)	397
RsaNI	GTAC	1 cut(s)	396
SaqAI	TTAA	1 cut(s)	171
SatI	GCNGC	2 cut(s)	218, 390
SchI	GAGTC	1 cut(s)	146
SduI	GDGCHC	2 cut(s)	25, 197
SetI	ASST	4 cut(s)	219, 299, 401, 431
Sse9I	AATT	1 cut(s)	417
SsiI	CCGC	2 cut(s)	120, 151
SspI	AATATT	1 cut(s)	181
StyI	CCWWGG	1 cut(s)	26
TaiI	ACGT	2 cut(s)	299, 431
TaqI	TCGA	1 cut(s)	59
TasI	AATT	1 cut(s)	417
TfiI	GAWTC	2 cut(s)	155, 239
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
TscAI	CASTG	1 cut(s)	241
TseFI	GTSAC	1 cut(s)	141
TseI	GCWGC	2 cut(s)	217, 389
Tsp45I	GTSAC	1 cut(s)	141
TspDTI	ATGAA	1 cut(s)	378
TspGWI	ACGGA	1 cut(s)	33
TspRI	CASTG	1 cut(s)	241
XapI	RAATTY	1 cut(s)	417
ZraI	GACGTC	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.