Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0019071

Physical Location & Seq

Genomic Coordinates Forward (+)

71276347 .. 71284323

Gene Structure 7977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG490500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGCCAGCAGAGCGCCAAACATTTGCAGCAAAGGGGCAGGAGAAGAAAAGTATCAGGTCAATTCTTTGTCTCAACTTGCCTTGCTTTTATCCCTGGCAAATAGGACGTTCAAAGAAAGATCGAAAGAGGGGCCTGACCCCATCTTTTATAGATGATGCACGCCATGAAATTATTGGTTCCAAAGATAACTTCCTTTCTCAGACGAAAAGGAAAATGTGGATTCGCCTTGATCAGGTACGGGGAATTCGATTTGAGTTTACTGAGGGCGCAGCAGAGGCTATGAGCATGAGGATAGACGGAGCACCATATGGGGAAACATCCCACTTGATGTCATCACATCGATTGAAATCTCTTATCACGGTAAACTCAACATCCTTGCCCATCCAAATCGTGATTGCCCAGCAAAGAGTATCCACGAGTCTAAAGACCACTCTGAAAGCCATAAGACGTTGGGTAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001775 GO:0003674 GO:0003824 GO:0004143 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005886 GO:0006629 GO:0006793 GO:0006796 GO:0006950 GO:0007596 GO:0007599 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009611 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0030168 GO:0030258 GO:0030425 GO:0031974 GO:0031981 GO:0032501 GO:0032991 GO:0036477 GO:0042060 GO:0042995 GO:0043005 GO:0043197 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044255 GO:0044309 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044456 GO:0044463 GO:0044464 GO:0045202 GO:0046834 GO:0050817 GO:0050878 GO:0050896 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071944 GO:0097447 GO:0097458 GO:0098794 GO:0120025 GO:0120038

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 ko04070 ko04072 ko05231 map00561 map00564 map01100 map01110 map04070 map04072 map05231

Pfam Domains

Protein Families

DAGK_acc DAGK_cat

Protein Analysis

153

Amino Acids

17.54

Weight (kDa)

10.5

Isoelectric Point (pI)

50.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019071)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000020594
rosa_roxburghii	Rroxscaffold_2G00096100 Rroxscaffold_2G00101130
rosa_rugosa	Rorug02G0429800 Rorug02G0429900 Rorug02G0430000
rosa_samantha	Rh2AG490500 Rh2CG476900
rosa_wichuraiana	Rw0G020230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	243
AfaI	GTAC	1 cut(s)	237
AfiI	CCNNNNNNNGG	1 cut(s)	232
AgsI	TTSAA	2 cut(s)	111, 346
AjnI	CCWGG	1 cut(s)	92
AjuI	GAANNNNNNNTTGG	2 cut(s)	173, 205
Alw21I	GWGCWC	1 cut(s)	304
Alw26I	GTCTC	1 cut(s)	74
AoxI	GGCC	1 cut(s)	130
ApeKI	GCWGC	2 cut(s)	26, 269
ApoI	RAATTY	1 cut(s)	243
AspLEI	GCGC	2 cut(s)	15, 269
AspS9I	GGNCC	1 cut(s)	130
BauI	CACGAG	1 cut(s)	415
Bbv12I	GWGCWC	1 cut(s)	304
BbvI	GCAGC	2 cut(s)	38, 281
BccI	CCATC	2 cut(s)	148, 389
BciT130I	CCWGG	1 cut(s)	94
BciVI	GTATCC	1 cut(s)	421
BclI	TGATCA	1 cut(s)	229
BcoDI	GTCTC	1 cut(s)	74
BfoI	RGCGCY	1 cut(s)	16
BfuI	GTATCC	1 cut(s)	421
BisI	GCNGC	2 cut(s)	27, 270
BlsI	GCNGC	2 cut(s)	28, 271
Bme1390I	CCNGG	1 cut(s)	94
BmgT120I	GGNCC	1 cut(s)	130
BmiI	GGNNCC	2 cut(s)	131, 178
BmrFI	CCNGG	1 cut(s)	94
BmsI	GCATC	1 cut(s)	145
Bsa29I	ATCGAT	1 cut(s)	340
BsaBI	GATNNNNATC	1 cut(s)	346
BsaJI	CCNNGG	1 cut(s)	92
Bsc4I	CCNNNNNNNGG	1 cut(s)	232
Bse8I	GATNNNNATC	1 cut(s)	346
BseBI	CCWGG	1 cut(s)	94
BseCI	ATCGAT	1 cut(s)	340
BseDI	CCNNGG	1 cut(s)	92
BseGI	GGATG	3 cut(s)	317, 371, 381
BseJI	GATNNNNATC	1 cut(s)	346
BseLI	CCNNNNNNNGG	1 cut(s)	232
BseMII	CTCAG	2 cut(s)	212, 252
BseXI	GCAGC	2 cut(s)	38, 281
BseYI	CCCAGC	1 cut(s)	399
BshFI	GGCC	1 cut(s)	132
BshVI	ATCGAT	1 cut(s)	340
BsiHKAI	GWGCWC	1 cut(s)	304
BslI	CCNNNNNNNGG	1 cut(s)	232
BsmAI	GTCTC	1 cut(s)	74
BsnI	GGCC	1 cut(s)	132
Bsp1286I	GDGCHC	1 cut(s)	304
Bsp143I	GATC	2 cut(s)	118, 229
BspANI	GGCC	1 cut(s)	132
BspCNI	CTCAG	2 cut(s)	211, 253
BspDI	ATCGAT	1 cut(s)	340
BspLI	GGNNCC	2 cut(s)	131, 178
BssECI	CCNNGG	1 cut(s)	92
BssMI	GATC	2 cut(s)	118, 229
BssSI	CACGAG	1 cut(s)	415
Bst2BI	CACGAG	1 cut(s)	415
Bst2UI	CCWGG	1 cut(s)	94
Bst4CI	ACNGT	1 cut(s)	361
BstC8I	GCNNGC	2 cut(s)	6, 160
BstDEI	CTNAG	2 cut(s)	198, 261
BstENI	CCTNNNNNAGG	1 cut(s)	230
BstF5I	GGATG	3 cut(s)	317, 371, 381
BstH2I	RGCGCY	1 cut(s)	16
BstHHI	GCGC	2 cut(s)	15, 269
BstKTI	GATC	2 cut(s)	121, 232
BstMAI	GTCTC	1 cut(s)	74
BstMBI	GATC	2 cut(s)	118, 229
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 275
BstNI	CCWGG	1 cut(s)	94
BstSCI	CCNGG	1 cut(s)	92
BstV1I	GCAGC	2 cut(s)	38, 281
Bsu15I	ATCGAT	1 cut(s)	340
BsuI	GTATCC	1 cut(s)	421
BsuRI	GGCC	1 cut(s)	132
BsuTUI	ATCGAT	1 cut(s)	340
BtsCI	GGATG	3 cut(s)	317, 371, 381
Cac8I	GCNNGC	2 cut(s)	6, 160
CfoI	GCGC	2 cut(s)	15, 269
Cfr13I	GGNCC	1 cut(s)	130
ClaI	ATCGAT	1 cut(s)	340
Csp6I	GTAC	1 cut(s)	236
CviAII	CATG	2 cut(s)	164, 286
CviJI	RGCY	3 cut(s)	132, 278, 440
CviKI_1	RGCY	3 cut(s)	132, 278, 440
CviQI	GTAC	1 cut(s)	236
DdeI	CTNAG	2 cut(s)	198, 261
DpnI	GATC	2 cut(s)	120, 231
DpnII	GATC	2 cut(s)	118, 229
EcoNI	CCTNNNNNAGG	1 cut(s)	230
EcoO109I	RGGNCCY	1 cut(s)	130
EcoRI	GAATTC	1 cut(s)	243
EcoRII	CCWGG	1 cut(s)	92
FaeI	CATG	2 cut(s)	167, 289
FaiI	YATR	7 cut(s)	149, 165, 281, 287, 307, 309, 443
FatI	CATG	2 cut(s)	163, 285
FauNDI	CATATG	1 cut(s)	307
FbaI	TGATCA	1 cut(s)	229
Fnu4HI	GCNGC	2 cut(s)	27, 270
FokI	GGATG	3 cut(s)	304, 358, 368
Fsp4HI	GCNGC	2 cut(s)	27, 270
GlaI	GCGC	2 cut(s)	14, 268
GluI	GCNGC	2 cut(s)	27, 270
GsaI	CCCAGC	1 cut(s)	403
HaeII	RGCGCY	1 cut(s)	16
HaeIII	GGCC	1 cut(s)	132
HhaI	GCGC	2 cut(s)	15, 269
Hin1II	CATG	2 cut(s)	167, 289
Hin6I	GCGC	2 cut(s)	13, 267
HinP1I	GCGC	2 cut(s)	13, 267
HinfI	GANTC	2 cut(s)	220, 418
Hpy166II	GTNNAC	2 cut(s)	258, 364
Hpy188I	TCNGA	2 cut(s)	201, 435
Hpy188III	TCNNGA	1 cut(s)	391
Hpy8I	GTNNAC	2 cut(s)	258, 364
HpyCH4III	ACNGT	1 cut(s)	361
HpyCH4IV	ACGT	2 cut(s)	106, 448
HpyCH4V	TGCA	2 cut(s)	26, 158
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 275
HpyF3I	CTNAG	2 cut(s)	198, 261
HpySE526I	ACGT	2 cut(s)	106, 448
Hsp92II	CATG	2 cut(s)	167, 289
HspAI	GCGC	2 cut(s)	13, 267
Ksp22I	TGATCA	1 cut(s)	229
Kzo9I	GATC	2 cut(s)	118, 229
LmnI	GCTCC	1 cut(s)	299
LpnPI	CCDG	8 cut(s)	18, 23, 40, 79, 106, 146, 218, 413
Lsp1109I	GCAGC	2 cut(s)	38, 281
LweI	GCATC	1 cut(s)	145
MaeII	ACGT	2 cut(s)	106, 448
MalI	GATC	2 cut(s)	120, 231
MboI	GATC	2 cut(s)	118, 229
MboII	GAAGA	1 cut(s)	55
MhlI	GDGCHC	1 cut(s)	304
MluCI	AATT	3 cut(s)	60, 168, 243
MlyI	GAGTC	1 cut(s)	427
MnlI	CCTC	4 cut(s)	120, 256, 268, 282
MspR9I	CCNGG	1 cut(s)	94
MvaI	CCWGG	1 cut(s)	94
MwoI	GCNNNNNNNGC	2 cut(s)	10, 275
NdeI	CATATG	1 cut(s)	307
NdeII	GATC	2 cut(s)	118, 229
NlaIII	CATG	2 cut(s)	167, 289
NlaIV	GGNNCC	2 cut(s)	131, 178
PcsI	WCGNNNNNNNCGW	1 cut(s)	244
PfeI	GAWTC	1 cut(s)	220
PkrI	GCNGC	2 cut(s)	28, 271
PleI	GAGTC	1 cut(s)	426
PpsI	GAGTC	1 cut(s)	426
Psp6I	CCWGG	1 cut(s)	92
PspFI	CCCAGC	1 cut(s)	399
PspGI	CCWGG	1 cut(s)	92
PspN4I	GGNNCC	2 cut(s)	131, 178
PspPI	GGNCC	1 cut(s)	130
RsaI	GTAC	1 cut(s)	237
RsaNI	GTAC	1 cut(s)	236
SatI	GCNGC	2 cut(s)	27, 270
Sau3AI	GATC	2 cut(s)	118, 229
Sau96I	GGNCC	1 cut(s)	130
SchI	GAGTC	1 cut(s)	427
ScrFI	CCNGG	1 cut(s)	94
SduI	GDGCHC	1 cut(s)	304
SetI	ASST	4 cut(s)	59, 109, 237, 451
SfaNI	GCATC	1 cut(s)	145
Sse9I	AATT	3 cut(s)	60, 168, 243
StyD4I	CCNGG	1 cut(s)	92
TaaI	ACNGT	1 cut(s)	361
TaiI	ACGT	2 cut(s)	109, 451
TaqI	TCGA	3 cut(s)	121, 247, 340
TasI	AATT	3 cut(s)	60, 168, 243
TfiI	GAWTC	1 cut(s)	220
TseI	GCWGC	2 cut(s)	26, 269
TspDTI	ATGAA	1 cut(s)	180
TspGWI	ACGGA	1 cut(s)	312
XagI	CCTNNNNNAGG	1 cut(s)	230
XapI	RAATTY	1 cut(s)	243
XcmI	CCANNNNNNNNNTGG	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.