Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0005767

Physical Location & Seq

Genomic Coordinates Forward (+)

24894553 .. 24895360

Gene Structure 808 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00102630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGTGTCTATTCCAGTTGCAGGTGACCAAGTTCCAAATTCAAGTGGTTCATCTCTTCAATTATCTGATGCCAAGGTTCCTGAATTAGAACCAAATGTGTCAAAAAGGAATGCTCCTGAACAAGCTGCGGCTTCTTCCTCTATGAATCAGATGAAAGAGAATGAAATTCTTGGCAAATCTGAGTTATTGGAGAATGGTTCGTCTAAAAGATTCTATGATTTGCGGCTTGTTGGAGAAGAAAACGCTCTTCAGGTAATTTGGACATTTACACGTAATTCTGCTGTACTTGCTCCTTGTTCATCTGGAAGGCCTGAAATTGGTGCAATGGCAAGGCAATCTAGTCGAAGTAGTCAAGTTGAAGCTGCATCTTTGAGAAATGAGAGACTGAATGAATCCGGTCCTACAAGTTCTGTACCCATGCATGATATTGGCCAAAGTATAGAAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PWWP

Protein Analysis

149

Amino Acids

16.01

Weight (kDa)

5.25

Isoelectric Point (pI)

76.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005767)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21295 AT3G21295 AT3G21295
fragaria_vesca	FvH4_6g32930 FvH4_6g32930 FvH4_6g32930 FvH4_6g32930 FvH4_6g32930
malus_domestica	MD09G1196400.v1.1 MD17G1177200.v1.1
prunus_persica	Prupe.3G052800_v2.0.a1 Prupe.3G052800_v2.0.a1 Prupe.3G052800_v2.0.a1
pyrus_communis	pycom09g11350 pycom17g18610
rosa_chinensis	RchiOBHm_Chr2g0142441
rosa_laevigata	RLG00000019959
rosa_multiflora	Rmu_sc0001211.1_g000021
rosa_roxburghii	Rroxscaffold_2G00102610 Rroxscaffold_2G00102630 Rroxscaffold_2G00102640
rosa_rugosa	Rorug02G0372700 Rorug02G0372800
rosa_samantha	Rh2AG424400 Rh2BG434000 Rh2CG411000 Rh2DG444000
rosa_wichuraiana	Rw2G034760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	11
Acc36I	ACCTGC	1 cut(s)	11
AciI	CCGC	2 cut(s)	128, 223
AcoI	YGGCCR	1 cut(s)	430
AcsI	RAATTY	2 cut(s)	37, 165
AcuI	CTGAAG	1 cut(s)	233
AfaI	GTAC	2 cut(s)	285, 414
AfiI	CCNNNNNNNGG	2 cut(s)	20, 317
AflIII	ACRYGT	1 cut(s)	269
AgsI	TTSAA	3 cut(s)	42, 59, 359
AluBI	AGCT	2 cut(s)	125, 362
AluI	AGCT	2 cut(s)	125, 362
Alw26I	GTCTC	1 cut(s)	376
AoxI	GGCC	2 cut(s)	308, 430
ApeKI	GCWGC	2 cut(s)	125, 362
ApoI	RAATTY	2 cut(s)	37, 165
AspS9I	GGNCC	1 cut(s)	398
AsuHPI	GGTGA	1 cut(s)	35
AvaII	GGWCC	1 cut(s)	398
BalI	TGGCCA	1 cut(s)	432
BbvI	GCAGC	2 cut(s)	112, 349
BcgI	CGANNNNNNTGC	2 cut(s)	323, 357
BcoDI	GTCTC	1 cut(s)	376
BfaI	CTAG	1 cut(s)	339
BfuAI	ACCTGC	1 cut(s)	11
BisI	GCNGC	4 cut(s)	126, 129, 224, 363
BlsI	GCNGC	4 cut(s)	127, 130, 225, 364
Bme18I	GGWCC	1 cut(s)	398
BmgT120I	GGNCC	1 cut(s)	398
BmiI	GGNNCC	1 cut(s)	78
BmsI	GCATC	2 cut(s)	58, 374
BsaAI	YACGTR	1 cut(s)	272
BsaJI	CCNNGG	1 cut(s)	72
BsaWI	WCCGGW	1 cut(s)	395
Bsc4I	CCNNNNNNNGG	2 cut(s)	20, 317
Bse1I	ACTGG	1 cut(s)	14
Bse3DI	GCAATG	1 cut(s)	330
BseDI	CCNNGG	1 cut(s)	72
BseLI	CCNNNNNNNGG	2 cut(s)	20, 317
BseMI	GCAATG	1 cut(s)	330
BseMII	CTCAG	1 cut(s)	171
BseNI	ACTGG	1 cut(s)	14
BseXI	GCAGC	2 cut(s)	112, 349
BshFI	GGCC	2 cut(s)	310, 432
BsiSI	CCGG	1 cut(s)	396
BslI	CCNNNNNNNGG	2 cut(s)	20, 317
BsmAI	GTCTC	1 cut(s)	376
BsmI	GAATGC	1 cut(s)	115
BsnI	GGCC	2 cut(s)	310, 432
BspACI	CCGC	2 cut(s)	128, 223
BspANI	GGCC	2 cut(s)	310, 432
BspCNI	CTCAG	1 cut(s)	172
BspLI	GGNNCC	1 cut(s)	78
BspMI	ACCTGC	1 cut(s)	11
BspQI	GCTCTTC	1 cut(s)	252
BsrDI	GCAATG	1 cut(s)	330
BsrI	ACTGG	1 cut(s)	14
BssECI	CCNNGG	1 cut(s)	72
BssT1I	CCWWGG	1 cut(s)	72
Bst6I	CTCTTC	2 cut(s)	60, 252
BstBAI	YACGTR	1 cut(s)	272
BstDEI	CTNAG	1 cut(s)	180
BstEII	GGTNACC	1 cut(s)	23
BstMAI	GTCTC	1 cut(s)	376
BstMWI	GCNNNNNNNGC	1 cut(s)	287
BstPI	GGTNACC	1 cut(s)	23
BstV1I	GCAGC	2 cut(s)	112, 349
BsuRI	GGCC	2 cut(s)	310, 432
BveI	ACCTGC	1 cut(s)	11
Cfr13I	GGNCC	1 cut(s)	398
Csp6I	GTAC	2 cut(s)	284, 413
CviAII	CATG	2 cut(s)	418, 422
CviJI	RGCY	6 cut(s)	125, 131, 226, 310, 362, 432
CviKI_1	RGCY	6 cut(s)	125, 131, 226, 310, 362, 432
CviQI	GTAC	2 cut(s)	284, 413
DdeI	CTNAG	1 cut(s)	180
EaeI	YGGCCR	1 cut(s)	430
Eam1104I	CTCTTC	2 cut(s)	60, 252
EarI	CTCTTC	2 cut(s)	60, 252
Eco130I	CCWWGG	1 cut(s)	72
Eco147I	AGGCCT	1 cut(s)	310
Eco47I	GGWCC	1 cut(s)	398
Eco57I	CTGAAG	1 cut(s)	233
Eco91I	GGTNACC	1 cut(s)	23
EcoO65I	GGTNACC	1 cut(s)	23
EcoT14I	CCWWGG	1 cut(s)	72
EcoT22I	ATGCAT	1 cut(s)	423
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	2 cut(s)	421, 425
FaiI	YATR	5 cut(s)	143, 216, 419, 423, 440
FatI	CATG	2 cut(s)	417, 421
Fnu4HI	GCNGC	4 cut(s)	126, 129, 224, 363
Fsp4HI	GCNGC	4 cut(s)	126, 129, 224, 363
FspBI	CTAG	1 cut(s)	339
GluI	GCNGC	4 cut(s)	126, 129, 224, 363
HaeIII	GGCC	2 cut(s)	310, 432
HapII	CCGG	1 cut(s)	396
Hin1II	CATG	2 cut(s)	421, 425
HinfI	GANTC	3 cut(s)	145, 210, 392
HpaII	CCGG	1 cut(s)	396
HphI	GGTGA	1 cut(s)	35
Hpy188I	TCNGA	3 cut(s)	67, 150, 181
Hpy188III	TCNNGA	3 cut(s)	80, 116, 303
HpyAV	CCTTC	1 cut(s)	300
HpyCH4IV	ACGT	1 cut(s)	271
HpyCH4V	TGCA	4 cut(s)	20, 323, 365, 421
HpyF10VI	GCNNNNNNNGC	1 cut(s)	287
HpyF3I	CTNAG	1 cut(s)	180
HpySE526I	ACGT	1 cut(s)	271
Hsp92II	CATG	2 cut(s)	421, 425
LguI	GCTCTTC	1 cut(s)	252
LmnI	GCTCC	2 cut(s)	118, 295
LpnPI	CCDG	8 cut(s)	6, 27, 93, 129, 236, 288, 324, 409
Lsp1109I	GCAGC	2 cut(s)	112, 349
LweI	GCATC	2 cut(s)	58, 374
MaeI	CTAG	1 cut(s)	339
MaeII	ACGT	1 cut(s)	271
MaeIII	GTNAC	1 cut(s)	23
MboII	GAAGA	4 cut(s)	47, 126, 239, 248
MlsI	TGGCCA	1 cut(s)	432
MluCI	AATT	7 cut(s)	37, 59, 83, 165, 255, 274, 315
MluNI	TGGCCA	1 cut(s)	432
MmeI	TCCRAC	1 cut(s)	211
MnlI	CCTC	1 cut(s)	148
Mox20I	TGGCCA	1 cut(s)	432
Mph1103I	ATGCAT	1 cut(s)	423
MscI	TGGCCA	1 cut(s)	432
Msp20I	TGGCCA	1 cut(s)	432
MspI	CCGG	1 cut(s)	396
Mva1269I	GAATGC	1 cut(s)	115
MwoI	GCNNNNNNNGC	1 cut(s)	287
NlaIII	CATG	2 cut(s)	421, 425
NlaIV	GGNNCC	1 cut(s)	78
NmuCI	GTSAC	1 cut(s)	23
NsiI	ATGCAT	1 cut(s)	423
PaqCI	CACCTGC	1 cut(s)	11
PceI	AGGCCT	1 cut(s)	310
PciSI	GCTCTTC	1 cut(s)	252
PctI	GAATGC	1 cut(s)	115
PfeI	GAWTC	3 cut(s)	145, 210, 392
PkrI	GCNGC	4 cut(s)	127, 130, 225, 364
Ppu21I	YACGTR	1 cut(s)	272
PspEI	GGTNACC	1 cut(s)	23
PspN4I	GGNNCC	1 cut(s)	78
PspPI	GGNCC	1 cut(s)	398
RsaI	GTAC	2 cut(s)	285, 414
RsaNI	GTAC	2 cut(s)	284, 413
SapI	GCTCTTC	1 cut(s)	252
SatI	GCNGC	4 cut(s)	126, 129, 224, 363
Sau96I	GGNCC	1 cut(s)	398
SetI	ASST	7 cut(s)	25, 78, 127, 255, 274, 364, 449
SfaNI	GCATC	2 cut(s)	58, 374
SinI	GGWCC	1 cut(s)	398
Sse9I	AATT	7 cut(s)	37, 59, 83, 165, 255, 274, 315
SseBI	AGGCCT	1 cut(s)	310
SsiI	CCGC	2 cut(s)	128, 223
SspMI	CTAG	1 cut(s)	339
StuI	AGGCCT	1 cut(s)	310
StyI	CCWWGG	1 cut(s)	72
TaiI	ACGT	1 cut(s)	274
TaqI	TCGA	1 cut(s)	343
TasI	AATT	7 cut(s)	37, 59, 83, 165, 255, 274, 315
TatI	WGTACW	1 cut(s)	283
TauI	GCSGC	2 cut(s)	131, 226
TfiI	GAWTC	3 cut(s)	145, 210, 392
TseFI	GTSAC	1 cut(s)	23
TseI	GCWGC	2 cut(s)	125, 362
Tsp45I	GTSAC	1 cut(s)	23
TspDTI	ATGAA	6 cut(s)	39, 158, 167, 177, 288, 405
VpaK11BI	GGWCC	1 cut(s)	398
XapI	RAATTY	2 cut(s)	37, 165
XspI	CTAG	1 cut(s)	339
Zsp2I	ATGCAT	1 cut(s)	423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.