Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005767

Physical Location & Seq

Genomic Coordinates Reverse (-)

47503699 .. 47505565

Gene Structure 1867 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0372700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1722 bp

ATGGCTGAAGCACTCATTTCGGTTCTCCTAGAACAATTGGCTTCAATCACTCGTCAACAGGTACAACAACAAGTGAAATTGGTAGTTGATGTTAAGAAAGAAGTTGCAAATCTCACCGAAAATTTCCAAGCTATAGAAGCTGTGCTCAAAGATGCAGAGGAGAGGCAAGTGAAGGAGGCTTCCGTTAAACTATGGCTGGATAAATTAAAGGACGTGTCCAACGAGATGGAGGACGTGTTGGATGATTGGAACACTGAAATTCTGAGGCTACAAATTGAGAAACAAGAGAAAGAAGCTGAAAATGCTCTTGGTACGGCTAAGAAGAAGAACACAAAAAGTGATACTGAACATATTGAGCGACAAAAGACTACTTCTTTTGTCGCTCAAACATTTGGTCGGGTAGATGAAAAAGAATTATTGGTGGGCAAGTTGTTGAGTGAGAGTAATCCTGAAGGGCAGGGCCCCCTTACCATCCCTATTGTCGGGATGGGTGGAATCGGTAAAACAACCCTTTCCCAACTAGCATATAATGACGAAAAAGTGAAGGCCAATTTCAGAAAAAGAATATGGGTTTGTGTCTCAGACCCATTTGATGAGCTCAACATAGCCAAAGCCATCATTGTTGCCCTTGATGGAAATGTCAATTCCATTTCGAATGATCTAGAAGGTTTCTTCCAATCTGTGCAGAAGTCTATCGAAGGGGAAAAGTTTCTCCTCGTGTTAGATGATGTGTGGAATAAAGACTATACAAAGTGGGAAAACTTGATGCTACCTTTACAGTATGGTGCTATAGGTAGTAAAATAATAGTCACTACACGAATAGAAGAAGTAGCTAGGATGATGGGAGCACCCAATAACACGATCAATTTGAAGGTGTTGAGTGACGAAGATTGTTGGTCATTGTTCGCTAGAATTGCGTTTACCAATGGAAACCAAGATGACTGTCAAATTTTGGAACCTATTGGTAAGGAAATTGTAAAGAAGTGCAAAGGGTTGCCTCTTGTTGCCAAGACTTTAAGTGGTCTCATGCACTATAAGAAAACAAAGAAAGAATGGCAAGATGTTTTGAGTAGTAAGATATGGGAGTTAGACACAGTGGAGCAACAAGTTTTCAAACCGTTATTACTAATTTATTATGATTTAACTCCAATGATCAAGCGTTGTCTCTTATATTGTGTTACTTTCCCAAAGGACCATATAATTGACAAAGAAGTTTTGATTGAGTTGTGGATATCGCAAGGTTTTACTGGTTCAGTTGGGAACAAAGAAAAGACAATGATAGACACTGGAGAATCATATTTCGATAACTTGGTAATGCGATCTTTCTTCCAAAATTTCAAGGAAGATGAATTTGGAGATATTAAACGGTGCCAAATGCATGATATTGTGCACGACTTTCTCCAATATTTAACCAAGAATGAATGTTTAATCATTGAGTTCAAAGGTGGGGAGGAGAGAATAGAATTGCCCAATAAGCTTGGTCATTTGACCATAATGTTTGCACCCGAAGGACCTTTTCCCCTTTCTTTTGACCACTGCCAACGTCTGCGGACCATTACAACATTTAATTGTAAAATTACGAGTCTCAGCCGAGGGTTGATTTTACAATTAAAATGCGTGAGGATGTTGAATTTGAGTGACAACGATATCGAAGAAGTTCCGGACGAGGTTGGCGTGTTGGTGCACTTGAGGTATTTGGATTTATCCTATAATGAGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PWWP

Protein Analysis

573

Amino Acids

65.42

Weight (kDa)

5.16

Isoelectric Point (pI)

38.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rx_N	PF18052	6 - 97	4.7e-20	Rx N-terminal domain
NB-ARC	PF00931	137 - 309	7.1e-36	NB-ARC domain
WHD_DRP	PF23559	395 - 466	2.1e-24	Disease resistance protein Winged helix domain
LRR_8	PF13855	516 - 571	3.7e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005767)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21295 AT3G21295 AT3G21295
fragaria_vesca	FvH4_6g32930 FvH4_6g32930 FvH4_6g32930 FvH4_6g32930 FvH4_6g32930
malus_domestica	MD09G1196400.v1.1 MD17G1177200.v1.1
prunus_persica	Prupe.3G052800_v2.0.a1 Prupe.3G052800_v2.0.a1 Prupe.3G052800_v2.0.a1
pyrus_communis	pycom09g11350 pycom17g18610
rosa_chinensis	RchiOBHm_Chr2g0142441
rosa_laevigata	RLG00000019959
rosa_multiflora	Rmu_sc0001211.1_g000021
rosa_roxburghii	Rroxscaffold_2G00102610 Rroxscaffold_2G00102630 Rroxscaffold_2G00102640
rosa_rugosa	Rorug02G0372700 Rorug02G0372800
rosa_samantha	Rh2AG424400 Rh2BG434000 Rh2CG411000 Rh2DG444000
rosa_wichuraiana	Rw2G034760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1368
AccIII	TCCGGA	1 cut(s)	1660
AciI	CCGC	1 cut(s)	1549
AcsI	RAATTY	6 cut(s)	121, 258, 948, 1333, 1349, 1630
AcuI	CTGAAG	2 cut(s)	27, 471
AfaI	GTAC	2 cut(s)	63, 313
AfiI	CCNNNNNNNGG	1 cut(s)	482
AflIII	ACRYGT	2 cut(s)	213, 234
AgsI	TTSAA	6 cut(s)	45, 871, 1114, 1339, 1441, 1630
AjiI	CACGTC	2 cut(s)	214, 235
AjuI	GAANNNNNNNTTGG	4 cut(s)	291, 323, 1335, 1367
AluBI	AGCT	7 cut(s)	131, 140, 296, 598, 833, 1477, 1719
AluI	AGCT	7 cut(s)	131, 140, 296, 598, 833, 1477, 1719
Alw21I	GWGCWC	5 cut(s)	147, 600, 850, 1392, 1686
Alw26I	GTCTC	4 cut(s)	583, 1028, 1169, 1589
Alw44I	GTGCAC	2 cut(s)	1388, 1682
Aor13HI	TCCGGA	1 cut(s)	1660
AoxI	GGCC	2 cut(s)	460, 546
ApaI	GGGCCC	1 cut(s)	464
ApaLI	GTGCAC	2 cut(s)	1388, 1682
ApoI	RAATTY	6 cut(s)	121, 258, 948, 1333, 1349, 1630
ArsI	GACNNNNNNTTYG	2 cut(s)	379, 411
Asp700I	GAANNNNTTC	2 cut(s)	708, 1656
AspS9I	GGNCC	5 cut(s)	460, 461, 1192, 1511, 1551
AsuHPI	GGTGA	1 cut(s)	106
AsuII	TTCGAA	1 cut(s)	653
AvaII	GGWCC	3 cut(s)	1192, 1511, 1551
BaeGI	GKGCMC	3 cut(s)	464, 1392, 1686
BanI	GGYRCC	1 cut(s)	1368
BanII	GRGCYC	2 cut(s)	464, 600
BauI	CACGAG	1 cut(s)	716
Bbv12I	GWGCWC	5 cut(s)	147, 600, 850, 1392, 1686
BccI	CCATC	6 cut(s)	220, 479, 481, 623, 626, 835
BceAI	ACGGC	1 cut(s)	330
BcgI	CGANNNNNNTGC	1 cut(s)	34
BclI	TGATCA	1 cut(s)	1152
BcoDI	GTCTC	4 cut(s)	583, 1028, 1169, 1589
BfaI	CTAG	6 cut(s)	29, 521, 662, 834, 909, 1720
BfmI	CTRYAG	2 cut(s)	132, 789
Bme18I	GGWCC	3 cut(s)	1192, 1511, 1551
BmgBI	CACGTC	2 cut(s)	214, 235
BmgT120I	GGNCC	5 cut(s)	460, 461, 1192, 1511, 1551
BmiI	GGNNCC	4 cut(s)	462, 463, 957, 1370
BmsI	GCATC	2 cut(s)	142, 756
BpmI	CTGGAG	1 cut(s)	1308
Bpu14I	TTCGAA	1 cut(s)	653
BpuEI	CTTGAG	1 cut(s)	1708
BsaI	GGTCTC	1 cut(s)	1028
BsaJI	CCNNGG	1 cut(s)	1591
BsaWI	WCCGGW	1 cut(s)	1660
BsaXI	ACNNNNNCTCC	2 cut(s)	221, 251
Bsc4I	CCNNNNNNNGG	1 cut(s)	482
Bse1I	ACTGG	2 cut(s)	1252, 1291
BseAI	TCCGGA	1 cut(s)	1660
BseDI	CCNNGG	1 cut(s)	1591
BseGI	GGATG	5 cut(s)	247, 471, 492, 843, 1629
BseLI	CCNNNNNNNGG	1 cut(s)	482
BseMII	CTCAG	3 cut(s)	254, 594, 1600
BseNI	ACTGG	2 cut(s)	1252, 1291
BseRI	GAGGAG	3 cut(s)	173, 704, 1466
BseSI	GKGCMC	3 cut(s)	464, 1392, 1686
BsgI	GTGCAG	1 cut(s)	704
BshFI	GGCC	2 cut(s)	462, 548
BshNI	GGYRCC	1 cut(s)	1368
BsiHKAI	GWGCWC	5 cut(s)	147, 600, 850, 1392, 1686
BsiSI	CCGG	1 cut(s)	1661
BslI	CCNNNNNNNGG	1 cut(s)	482
BsmAI	GTCTC	4 cut(s)	583, 1028, 1169, 1589
BsnI	GGCC	2 cut(s)	462, 548
Bso31I	GGTCTC	1 cut(s)	1028
Bsp119I	TTCGAA	1 cut(s)	653
Bsp120I	GGGCCC	1 cut(s)	460
Bsp1286I	GDGCHC	6 cut(s)	147, 464, 600, 850, 1392, 1686
Bsp13I	TCCGGA	1 cut(s)	1660
Bsp143I	GATC	4 cut(s)	658, 861, 1152, 1319
BspACI	CCGC	1 cut(s)	1549
BspANI	GGCC	2 cut(s)	462, 548
BspCNI	CTCAG	3 cut(s)	255, 593, 1599
BspEI	TCCGGA	1 cut(s)	1660
BspLI	GGNNCC	4 cut(s)	462, 463, 957, 1370
BspT104I	TTCGAA	1 cut(s)	653
BspT107I	GGYRCC	1 cut(s)	1368
BspTNI	GGTCTC	1 cut(s)	1028
BsrI	ACTGG	2 cut(s)	1252, 1291
BssECI	CCNNGG	1 cut(s)	1591
BssMI	GATC	4 cut(s)	658, 861, 1152, 1319
BssSI	CACGAG	1 cut(s)	716
Bst2BI	CACGAG	1 cut(s)	716
Bst4CI	ACNGT	5 cut(s)	780, 944, 1096, 1119, 1368
BstBI	TTCGAA	1 cut(s)	653
BstDEI	CTNAG	4 cut(s)	263, 318, 580, 1586
BstF5I	GGATG	5 cut(s)	247, 471, 492, 843, 1629
BstKTI	GATC	4 cut(s)	661, 864, 1155, 1322
BstMAI	GTCTC	4 cut(s)	583, 1028, 1169, 1589
BstMBI	GATC	4 cut(s)	658, 861, 1152, 1319
BstMWI	GCNNNNNNNGC	4 cut(s)	137, 302, 914, 1474
BstSFI	CTRYAG	2 cut(s)	132, 789
BstSLI	GKGCMC	3 cut(s)	464, 1392, 1686
BstXI	CCANNNNNNTGG	1 cut(s)	226
BsuRI	GGCC	2 cut(s)	462, 548
BtrI	CACGTC	2 cut(s)	214, 235
BtsCI	GGATG	5 cut(s)	247, 471, 492, 843, 1629
BtsI	GCAGTG	1 cut(s)	1534
BtsIMutI	CAGTG	4 cut(s)	252, 1101, 1284, 1534
Cfr13I	GGNCC	5 cut(s)	460, 461, 1192, 1511, 1551
Csp6I	GTAC	2 cut(s)	62, 312
CviAII	CATG	2 cut(s)	1027, 1379
CviQI	GTAC	2 cut(s)	62, 312
DdeI	CTNAG	4 cut(s)	263, 318, 580, 1586
DpnI	GATC	4 cut(s)	660, 863, 1154, 1321
DpnII	GATC	4 cut(s)	658, 861, 1152, 1319
Ecl136II	GAGCTC	1 cut(s)	598
Eco24I	GRGCYC	2 cut(s)	464, 600
Eco31I	GGTCTC	1 cut(s)	1028
Eco32I	GATATC	2 cut(s)	1233, 1648
Eco47I	GGWCC	3 cut(s)	1192, 1511, 1551
Eco53kI	GAGCTC	1 cut(s)	598
Eco57I	CTGAAG	2 cut(s)	27, 471
EcoICRI	GAGCTC	1 cut(s)	598
EcoO109I	RGGNCCY	3 cut(s)	460, 461, 1511
EcoRV	GATATC	2 cut(s)	1233, 1648
EcoT22I	ATGCAT	1 cut(s)	1380
EcoT38I	GRGCYC	2 cut(s)	464, 600
FaeI	CATG	2 cut(s)	1030, 1382
FatI	CATG	2 cut(s)	1026, 1378
FbaI	TGATCA	1 cut(s)	1152
FokI	GGATG	5 cut(s)	254, 458, 499, 850, 1636
FriOI	GRGCYC	2 cut(s)	464, 600
FspBI	CTAG	6 cut(s)	29, 521, 662, 834, 909, 1720
GsuI	CTGGAG	1 cut(s)	1308
HaeIII	GGCC	2 cut(s)	462, 548
HapII	CCGG	1 cut(s)	1661
Hin1II	CATG	2 cut(s)	1030, 1382
HincII	GTYRAC	1 cut(s)	56
HindII	GTYRAC	1 cut(s)	56
HindIII	AAGCTT	1 cut(s)	1475
HinfI	GANTC	3 cut(s)	495, 1292, 1582
HpaII	CCGG	1 cut(s)	1661
HphI	GGTGA	1 cut(s)	106
Hpy166II	GTNNAC	4 cut(s)	56, 921, 1390, 1684
Hpy188I	TCNGA	3 cut(s)	264, 557, 583
Hpy188III	TCNNGA	4 cut(s)	449, 484, 662, 1661
Hpy8I	GTNNAC	4 cut(s)	56, 921, 1390, 1684
HpyAV	CCTTC	7 cut(s)	166, 446, 538, 659, 692, 865, 1502
HpyCH4III	ACNGT	5 cut(s)	780, 944, 1096, 1119, 1368
HpyCH4IV	ACGT	3 cut(s)	213, 234, 1543
HpyCH4V	TGCA	9 cut(s)	107, 155, 685, 987, 1030, 1378, 1390, 1502, 1684
HpyF10VI	GCNNNNNNNGC	4 cut(s)	137, 302, 914, 1474
HpyF3I	CTNAG	4 cut(s)	263, 318, 580, 1586
HpySE526I	ACGT	3 cut(s)	213, 234, 1543
Hsp92II	CATG	2 cut(s)	1030, 1382
Kpn2I	TCCGGA	1 cut(s)	1660
Ksp22I	TGATCA	1 cut(s)	1152
Kzo9I	GATC	4 cut(s)	658, 861, 1152, 1319
LmnI	GCTCC	2 cut(s)	845, 1099
LpnPI	CCDG	7 cut(s)	44, 182, 443, 462, 1233, 1272, 1674
LweI	GCATC	2 cut(s)	142, 756
MaeI	CTAG	6 cut(s)	29, 521, 662, 834, 909, 1720
MaeII	ACGT	3 cut(s)	213, 234, 1543
MaeIII	GTNAC	4 cut(s)	808, 881, 1177, 1637
MalI	GATC	4 cut(s)	660, 863, 1154, 1321
MboI	GATC	4 cut(s)	658, 861, 1152, 1319
MboII	GAAGA	8 cut(s)	334, 337, 664, 836, 899, 1318, 1355, 1664
MfeI	CAATTG	1 cut(s)	35
MhlI	GDGCHC	6 cut(s)	147, 464, 600, 850, 1392, 1686
MlyI	GAGTC	1 cut(s)	1591
MmeI	TCCRAC	2 cut(s)	219, 243
Mph1103I	ATGCAT	1 cut(s)	1380
MroI	TCCGGA	1 cut(s)	1660
MroXI	GAANNNNTTC	2 cut(s)	708, 1656
MspI	CCGG	1 cut(s)	1661
MunI	CAATTG	1 cut(s)	35
MwoI	GCNNNNNNNGC	4 cut(s)	137, 302, 914, 1474
NdeII	GATC	4 cut(s)	658, 861, 1152, 1319
NlaIII	CATG	2 cut(s)	1030, 1382
NlaIV	GGNNCC	4 cut(s)	462, 463, 957, 1370
NmeAIII	GCCGAG	1 cut(s)	1616
NmuCI	GTSAC	3 cut(s)	808, 881, 1637
NsiI	ATGCAT	1 cut(s)	1380
NspV	TTCGAA	1 cut(s)	653
PcsI	WCGNNNNNNNCGW	2 cut(s)	219, 1671
PdmI	GAANNNNTTC	2 cut(s)	708, 1656
PfeI	GAWTC	2 cut(s)	495, 1292
PleI	GAGTC	1 cut(s)	1590
PpsI	GAGTC	1 cut(s)	1590
PpuMI	RGGWCCY	1 cut(s)	1511
Psp124BI	GAGCTC	1 cut(s)	600
Psp5II	RGGWCCY	1 cut(s)	1511
PspN4I	GGNNCC	4 cut(s)	462, 463, 957, 1370
PspOMI	GGGCCC	1 cut(s)	460
PspPI	GGNCC	5 cut(s)	460, 461, 1192, 1511, 1551
PspPPI	RGGWCCY	1 cut(s)	1511
RsaI	GTAC	2 cut(s)	63, 313
RsaNI	GTAC	2 cut(s)	62, 312
SacI	GAGCTC	1 cut(s)	600
Sau3AI	GATC	4 cut(s)	658, 861, 1152, 1319
Sau96I	GGNCC	5 cut(s)	460, 461, 1192, 1511, 1551
SchI	GAGTC	1 cut(s)	1591
SduI	GDGCHC	6 cut(s)	147, 464, 600, 850, 1392, 1686
SfaNI	GCATC	2 cut(s)	142, 756
SfcI	CTRYAG	2 cut(s)	132, 789
SfuI	TTCGAA	1 cut(s)	653
SinI	GGWCC	3 cut(s)	1192, 1511, 1551
SmlI	CTYRAG	1 cut(s)	1687
SmoI	CTYRAG	1 cut(s)	1687
SsiI	CCGC	1 cut(s)	1549
SspI	AATATT	1 cut(s)	1406
SspMI	CTAG	6 cut(s)	29, 521, 662, 834, 909, 1720
SstI	GAGCTC	1 cut(s)	600
TaaI	ACNGT	5 cut(s)	780, 944, 1096, 1119, 1368
TaiI	ACGT	3 cut(s)	216, 237, 1546
TaqI	TCGA	4 cut(s)	653, 696, 1302, 1650
TfiI	GAWTC	2 cut(s)	495, 1292
TscAI	CASTG	4 cut(s)	259, 1101, 1291, 1541
TseFI	GTSAC	3 cut(s)	808, 881, 1637
Tsp45I	GTSAC	3 cut(s)	808, 881, 1637
TspDTI	ATGAA	3 cut(s)	420, 1362, 1434
TspGWI	ACGGA	1 cut(s)	172
TspRI	CASTG	4 cut(s)	259, 1101, 1291, 1541
VneI	GTGCAC	2 cut(s)	1388, 1682
VpaK11BI	GGWCC	3 cut(s)	1192, 1511, 1551
XapI	RAATTY	6 cut(s)	121, 258, 948, 1333, 1349, 1630
XbaI	TCTAGA	1 cut(s)	661
XmnI	GAANNNNTTC	2 cut(s)	708, 1656
XspI	CTAG	6 cut(s)	29, 521, 662, 834, 909, 1720
Zsp2I	ATGCAT	1 cut(s)	1380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.