Rroxscaffold_2G00102640

At1g51745-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0005767
Physical Location & Seq
Forward (+)
24895528 .. 24895892
365 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00102640.1

Sequence Viewer

Length: 342 bp
ATGGTATTAGCGGTTCTGCTGCATAGCACTACACAGTACAAGGAAAGTCCAAACAGGCTGCGGATTTGTCTGATGGGCCGACTCAGAGGTCACTTCCCTATCGGCAGTCTCGCTTCATGGTACCTGCGATATCAGACATCAGATTCTATTGCCCGCAATACTTGCTCTGATACTTCATTATATGATGTCAAACTTGAGCATGTACCACTGGTTTCTCTAATGAGTAAATTGAATGGTAAAGCCATTGTTGGTCACCCAATCACAGTTAAGGCTTTGGATGATGGCTATAGTGACAGACTGTTTGGCAGTACGGAATGTGATCTTAGAGGTGGCAAACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PWWP

Protein Analysis

113

Amino Acids

12.55

Weight (kDa)

9.12

Isoelectric Point (pI)

28.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 87
Acc36I ACCTGC 1 cut(s) 132
Acc65I GGTACC 1 cut(s) 120
AccB1I GGYRCC 1 cut(s) 120
AciI CCGC 3 cut(s) 11, 61, 154
AfaI GTAC 4 cut(s) 38, 122, 204, 310
AgsI TTSAA 1 cut(s) 232
Alw26I GTCTC 1 cut(s) 113
AoxI GGCC 1 cut(s) 76
ApeKI GCWGC 2 cut(s) 19, 58
ArsI GACNNNNNNTTYG 2 cut(s) 284, 316
Asp718I GGTACC 1 cut(s) 120
AspS9I GGNCC 1 cut(s) 76
AsuHPI GGTGA 1 cut(s) 245
BanI GGYRCC 1 cut(s) 120
BbvI GCAGC 2 cut(s) 6, 45
BccI CCATC 2 cut(s) 67, 275
BcoDI GTCTC 1 cut(s) 113
BfmI CTRYAG 1 cut(s) 286
BfuAI ACCTGC 1 cut(s) 132
BisI GCNGC 2 cut(s) 20, 59
BlsI GCNGC 2 cut(s) 21, 60
BmgT120I GGNCC 1 cut(s) 76
BmiI GGNNCC 1 cut(s) 122
BpuEI CTTGAG 1 cut(s) 215
Bse1I ACTGG 1 cut(s) 213
BseGI GGATG 1 cut(s) 283
BseMII CTCAG 1 cut(s) 97
BseNI ACTGG 1 cut(s) 213
BseXI GCAGC 2 cut(s) 6, 45
BshFI GGCC 1 cut(s) 78
BshNI GGYRCC 1 cut(s) 120
BsmAI GTCTC 1 cut(s) 113
BsnI GGCC 1 cut(s) 78
Bsp143I GATC 1 cut(s) 319
BspACI CCGC 3 cut(s) 11, 61, 154
BspANI GGCC 1 cut(s) 78
BspCNI CTCAG 1 cut(s) 96
BspLI GGNNCC 1 cut(s) 122
BspMI ACCTGC 1 cut(s) 132
BspT107I GGYRCC 1 cut(s) 120
BsrI ACTGG 1 cut(s) 213
BssMI GATC 1 cut(s) 319
Bst4CI ACNGT 3 cut(s) 36, 265, 300
BstAPI GCANNNNNTGC 1 cut(s) 162
BstC8I GCNNGC 1 cut(s) 154
BstDEI CTNAG 2 cut(s) 83, 323
BstEII GGTNACC 1 cut(s) 251
BstF5I GGATG 1 cut(s) 283
BstKTI GATC 1 cut(s) 322
BstMAI GTCTC 1 cut(s) 113
BstMBI GATC 1 cut(s) 319
BstMWI GCNNNNNNNGC 1 cut(s) 162
BstNSI RCATGY 1 cut(s) 203
BstPI GGTNACC 1 cut(s) 251
BstSFI CTRYAG 1 cut(s) 286
BstV1I GCAGC 2 cut(s) 6, 45
BsuRI GGCC 1 cut(s) 78
BtsCI GGATG 1 cut(s) 283
BtsIMutI CAGTG 1 cut(s) 206
BveI ACCTGC 1 cut(s) 132
Cac8I GCNNGC 1 cut(s) 154
Cfr13I GGNCC 1 cut(s) 76
Csp6I GTAC 4 cut(s) 37, 121, 203, 309
CviAII CATG 2 cut(s) 117, 200
CviJI RGCY 5 cut(s) 58, 78, 242, 272, 285
CviKI_1 RGCY 5 cut(s) 58, 78, 242, 272, 285
CviQI GTAC 4 cut(s) 37, 121, 203, 309
DdeI CTNAG 2 cut(s) 83, 323
DpnI GATC 1 cut(s) 321
DpnII GATC 1 cut(s) 319
DrdI GACNNNNNNGTC 1 cut(s) 87
DseDI GACNNNNNNGTC 1 cut(s) 87
Eco32I GATATC 1 cut(s) 131
Eco91I GGTNACC 1 cut(s) 251
EcoO65I GGTNACC 1 cut(s) 251
EcoRV GATATC 1 cut(s) 131
FaeI CATG 2 cut(s) 120, 203
FaiI YATR 6 cut(s) 24, 118, 181, 183, 201, 288
FatI CATG 2 cut(s) 116, 199
FauI CCCGC 1 cut(s) 161
Fnu4HI GCNGC 2 cut(s) 20, 59
FokI GGATG 1 cut(s) 290
Fsp4HI GCNGC 2 cut(s) 20, 59
GluI GCNGC 2 cut(s) 20, 59
HaeIII GGCC 1 cut(s) 78
Hin1II CATG 2 cut(s) 120, 203
HinfI GANTC 2 cut(s) 81, 143
HphI GGTGA 1 cut(s) 245
Hpy188I TCNGA 5 cut(s) 72, 86, 135, 142, 169
HpyCH4III ACNGT 3 cut(s) 36, 265, 300
HpyCH4V TGCA 1 cut(s) 22
HpyF10VI GCNNNNNNNGC 1 cut(s) 162
HpyF3I CTNAG 2 cut(s) 83, 323
Hsp92II CATG 2 cut(s) 120, 203
KpnI GGTACC 1 cut(s) 124
Kzo9I GATC 1 cut(s) 319
LpnPI CCDG 3 cut(s) 40, 137, 194
Lsp1109I GCAGC 2 cut(s) 6, 45
MaeIII GTNAC 3 cut(s) 89, 251, 290
MalI GATC 1 cut(s) 321
MboI GATC 1 cut(s) 319
MluCI AATT 1 cut(s) 227
MlyI GAGTC 1 cut(s) 75
MnlI CCTC 2 cut(s) 80, 320
MseI TTAA 1 cut(s) 267
MwoI GCNNNNNNNGC 1 cut(s) 162
NdeII GATC 1 cut(s) 319
NlaIII CATG 2 cut(s) 120, 203
NlaIV GGNNCC 1 cut(s) 122
NmuCI GTSAC 3 cut(s) 89, 251, 290
NspI RCATGY 1 cut(s) 203
PfeI GAWTC 1 cut(s) 143
PkrI GCNGC 2 cut(s) 21, 60
PleI GAGTC 1 cut(s) 75
PpsI GAGTC 1 cut(s) 75
PspEI GGTNACC 1 cut(s) 251
PspN4I GGNNCC 1 cut(s) 122
PspPI GGNCC 1 cut(s) 76
PsrI GAACNNNNNNTAC 1 cut(s) 29
RsaI GTAC 4 cut(s) 38, 122, 204, 310
RsaNI GTAC 4 cut(s) 37, 121, 203, 309
SaqAI TTAA 1 cut(s) 267
SatI GCNGC 2 cut(s) 20, 59
Sau3AI GATC 1 cut(s) 319
Sau96I GGNCC 1 cut(s) 76
SchI GAGTC 1 cut(s) 75
SetI ASST 4 cut(s) 91, 126, 331, 340
SfcI CTRYAG 1 cut(s) 286
SmlI CTYRAG 1 cut(s) 194
SmoI CTYRAG 1 cut(s) 194
Sse9I AATT 1 cut(s) 227
SsiI CCGC 3 cut(s) 11, 61, 154
TaaI ACNGT 3 cut(s) 36, 265, 300
TasI AATT 1 cut(s) 227
TatI WGTACW 1 cut(s) 36
TfiI GAWTC 1 cut(s) 143
Tru1I TTAA 1 cut(s) 267
Tru9I TTAA 1 cut(s) 267
TscAI CASTG 1 cut(s) 213
TseFI GTSAC 3 cut(s) 89, 251, 290
TseI GCWGC 2 cut(s) 19, 58
Tsp45I GTSAC 3 cut(s) 89, 251, 290
TspDTI ATGAA 2 cut(s) 105, 165
TspGWI ACGGA 1 cut(s) 326
TspRI CASTG 1 cut(s) 213
XceI RCATGY 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.