Rroxscaffold_2G00146460

Belongs to the Ca(2 ) cation antiporter (CaCA) (TC 2.A.19) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0013551
Physical Location & Seq
Forward (+)
84346262 .. 84348229
1968 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00146460.1

Sequence Viewer

Length: 1968 bp
ATGGGAGGACCCAATTGTAAAAATGCCCGATTTCGTGGGGCGTTCAATGCAATTTGTGCTCTGGTGTTGTTCTTCTTGTTCTACACCCAGGATAGTTTCATCAAAAACCCGTTTCTGGGTGCTTCGAATTCGGTTCTTCCTCCTATCTGGAGCTCCAAAGTTGATGCCTTTATGGGCAATCGGGTCGAAATTATCCGCCGGAGAATGGCCCAGGTTAATGTGAATGCTAATGTTACTTATTCTAATTCTAGTCGTATTAGTGTTAATGGGTCAGATGCCAACTATGTAACAGAGGCTGATCCCAAAGTGTGCACTGGGTTGTTCGAACACCATGGTTTTGCTACTAAATGTGAGTACTTGATTGCCCACCCGGAATGTAATCCCGGCGGGCACTTTAATTACATTAAGTTTCTGTACTGTGACTGTGGGAGCTTTAGCTTTCTGGGCTATGTTGCATTGACAATTTGGTTGGCTGCACTGTTCTATCTGTTGGGCAATACTGCCGCCGATTACTTCTGTTGTTCGCTGGAGAAGCTTTCGAGTCTGTTGAATTTGCCGGCCACTGTGGCCGGTGTGTCTCTGCTTCCGCTTGGGAATGGTGCTCCGGATGTGTTTGCAAGCATTGCTGCTTTCGTAGGGAAGGATGCGGGCGACGTGGGGCTGAATAGTGTGTTGGGGGGAGCTGTTTTTGTTACTTGTATTGTTGTTGGTATTATATCTCTTTGTGTGGCTGATAAGGCGGTTCAGATTGATAGGAAGTGCTTTATCAGAGATATATGTTTTTTTCTCTTTACAATCTTCTCGCTTGCGATGATGTTGGTGGTTGGGAAGGTTACTGTTGGGGGTGCTATAGCATTTGTGTTGATTTATGTGGTTTATGGGTTTGTGGTGGCTGCGAATGAGCTTTTGAGGAAACATGTTCGAAAGTTAAGGTTTGATGTTGTAACACCATTGCTTCCAGTTAAGGGAAGTATATTTTCACAGGGAAATGAGGAGGATGAATCCATATATGCTGGGCTACTTGAATCTGAAGAGGGCAATGACGTGCCTTACCTCCAAAGTAAGCTGCCGCAGTGGATGTGGGCTTCGAATGTAGCAATTTATTCAAATCAGAGTGCAAAGAGTAGTATGGACAGCTCAAGGTCATTGTGGGGTTGGAAGGAGGAGGAACATATCAATGAAAGCTCTTCCTCTTCTAAAGTTCTATCAATGCTAGAGATTCCATTGACGCTGCCGAGACGGTTAACAATCCCCATAATTGAGGAGGATAGGTGGTCCAAAGGTTATGCTGTTGCAAGTGCTGTTTTAGCTCCTATTCTTCTGGTATTCTTATGGGGCACTCAAGATGATGTGGGATCTACGAGTGTGAAGATTGCGTATTTTATAGGTATTGTATCTGGTGTTGTTTTGGGTATCCTTGCATATCTATACACCAGAGCTGACCAACCTCCCCGCAAATTTTTATTTCCATGGGTTTTGGGAGGATTTTTCATGAGTATTATCTGGTTCTACATTGTTGCAAATGAGCTGCTTTCATTACTGGTGGCACTGGGTGTAATTTTTGGAATAAATCCATCAATTCTCGGATTGACTGTGTTAGCATGGGGCAACTCAATGGGTGATTTAATGTCGAATGTTGCACTGGCAATTAATGGTGGTGATGGTGTACAAATTGCAATGTCTGGATGTTATGCTGGGCCTATGTTCAACACACTTGCTGGCTTGGGGATGTCGATGCTGCTTGCCGCCTGGTCTAATAGACCGGCATCTTATATAATACCCAGAGATAGTAGCTTGTATTTTACAATGGGATTCCTAGTGGCAGGGCTTATTTGGTCACTAATTGTGCTGCCCAGGAATGACATGCGACCTGACAAGATCTTAGGAGTCGGCCTTATAACACTCTATATGATATTTCTCTCCCTCAGAATAGCCGCATCAATGGGGGCACTGTCACTGGTAGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Na_Ca_ex

Protein Analysis

655

Amino Acids

71.19

Weight (kDa)

6.61

Isoelectric Point (pI)

34.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_Ca_ex PF01699 155 - 296 8.7e-24 Sodium/calcium exchanger protein
Na_Ca_ex PF01699 492 - 644 1e-27 Sodium/calcium exchanger protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013551)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54115 AT3G14070
fragaria_vesca FvH4_1g08880
malus_domestica MD02G1094200.v1.1 MD15G1219100.v1.1
prunus_persica Prupe.7G196800_v2.0.a1
pyrus_communis pycom02g07420 pycom15g19420
rosa_chinensis RchiOBHm_Chr2g0095341
rosa_laevigata RLG00000016556
rosa_multiflora Rmu_ssc0000183.1_g000034
rosa_roxburghii Rroxscaffold_2G00146460
rosa_rugosa Rorug02G0049800
rosa_samantha Rh2AG097900 Rh2BG099100 Rh2CG101200 Rh2DG098800
rosa_wichuraiana Rw2G007390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1898
AccIII TCCGGA 1 cut(s) 604
AclWI GGATC 2 cut(s) 293, 1363
AcoI YGGCCR 2 cut(s) 558, 567
AcsI RAATTY 3 cut(s) 127, 550, 1457
AcuI CTGAAG 1 cut(s) 1050
AdeI CACNNNGTG 1 cut(s) 1553
AfaI GTAC 3 cut(s) 356, 416, 1668
AfiI CCNNNNNNNGG 4 cut(s) 115, 116, 205, 965
AflIII ACRYGT 1 cut(s) 916
AgsI TTSAA 5 cut(s) 46, 550, 1025, 1107, 1708
AjiI CACGTC 2 cut(s) 655, 1045
AjnI CCWGG 4 cut(s) 87, 210, 1748, 1853
AjuI GAANNNNNNNTTGG 2 cut(s) 656, 688
Alw21I GWGCWC 4 cut(s) 61, 155, 314, 604
Alw26I GTCTC 2 cut(s) 582, 1231
Alw44I GTGCAC 1 cut(s) 310
AlwI GGATC 2 cut(s) 293, 1363
AlwNI CAGNNNCTG 1 cut(s) 296
Aor13HI TCCGGA 1 cut(s) 604
AoxI GGCC 5 cut(s) 207, 558, 567, 1697, 1891
ApaLI GTGCAC 1 cut(s) 310
ApeKI GCWGC 8 cut(s) 473, 626, 893, 1066, 1231, 1528, 1738, 1849
ApoI RAATTY 3 cut(s) 127, 550, 1457
AseI ATTAAT 1 cut(s) 1650
AspS9I GGNCC 4 cut(s) 8, 208, 1275, 1697
AsuC2I CCSGG 2 cut(s) 371, 384
AsuHPI GGTGA 2 cut(s) 1631, 1670
AsuII TTCGAA 4 cut(s) 125, 324, 922, 1088
AvaII GGWCC 2 cut(s) 8, 1275
BaeGI GKGCMC 4 cut(s) 314, 393, 1340, 1951
BanII GRGCYC 1 cut(s) 155
Bbv12I GWGCWC 4 cut(s) 61, 155, 314, 604
BbvI GCAGC 8 cut(s) 460, 613, 880, 1053, 1218, 1515, 1725, 1836
BccI CCATC 2 cut(s) 1582, 1655
BcgI CGANNNNNNTGC 2 cut(s) 166, 200
BciT130I CCWGG 4 cut(s) 89, 212, 1750, 1855
BciVI GTATCC 1 cut(s) 1424
BcnI CCSGG 2 cut(s) 371, 384
BcoDI GTCTC 2 cut(s) 582, 1231
BfaI CTAG 3 cut(s) 249, 1214, 1817
BfmI CTRYAG 1 cut(s) 849
BfuI GTATCC 1 cut(s) 1424
BglI GCCNNNNNGGC 1 cut(s) 566
BglII AGATCT 1 cut(s) 1878
BmcAI AGTACT 1 cut(s) 356
Bme1390I CCNGG 6 cut(s) 89, 212, 371, 384, 1750, 1855
Bme18I GGWCC 2 cut(s) 8, 1275
BmgBI CACGTC 2 cut(s) 655, 1045
BmgT120I GGNCC 4 cut(s) 8, 208, 1275, 1697
BmiI GGNNCC 1 cut(s) 10
BmrFI CCNGG 6 cut(s) 89, 212, 371, 384, 1750, 1855
BmrI ACTGGG 2 cut(s) 324, 1559
BmsI GCATC 6 cut(s) 154, 265, 634, 1725, 1775, 1946
BmuI ACTGGG 2 cut(s) 324, 1559
BpmI CTGGAG 2 cut(s) 169, 548
Bpu14I TTCGAA 4 cut(s) 125, 324, 922, 1088
BpuEI CTTGAG 2 cut(s) 1123, 1326
BpuMI CCSGG 2 cut(s) 371, 384
BsaJI CCNNGG 5 cut(s) 87, 210, 331, 1469, 1853
BsaWI WCCGGW 1 cut(s) 604
BsaXI ACNNNNNCTCC 2 cut(s) 1256, 1286
Bsc4I CCNNNNNNNGG 4 cut(s) 115, 116, 205, 965
Bse118I RCCGGY 3 cut(s) 556, 569, 1762
Bse1I ACTGG 6 cut(s) 319, 959, 1545, 1554, 1647, 1962
Bse3DI GCAATG 4 cut(s) 621, 950, 1045, 1683
BseAI TCCGGA 1 cut(s) 604
BseBI CCWGG 4 cut(s) 89, 212, 1750, 1855
BseDI CCNNGG 5 cut(s) 87, 210, 331, 1469, 1853
BseGI GGATG 6 cut(s) 613, 649, 1003, 1083, 1691, 1734
BseLI CCNNNNNNNGG 4 cut(s) 115, 116, 205, 965
BseMI GCAATG 4 cut(s) 621, 950, 1045, 1683
BseMII CTCAG 1 cut(s) 1939
BseNI ACTGG 6 cut(s) 319, 959, 1545, 1554, 1647, 1962
BseRI GAGGAG 3 cut(s) 1007, 1178, 1277
BseSI GKGCMC 4 cut(s) 314, 393, 1340, 1951
BseXI GCAGC 8 cut(s) 460, 613, 880, 1053, 1218, 1515, 1725, 1836
BseYI CCCAGC 2 cut(s) 1013, 1694
BsgI GTGCAG 1 cut(s) 459
BshFI GGCC 5 cut(s) 209, 560, 569, 1699, 1893
BsiHKAI GWGCWC 4 cut(s) 61, 155, 314, 604
BsiSI CCGG 7 cut(s) 199, 371, 384, 557, 570, 605, 1763
BslI CCNNNNNNNGG 4 cut(s) 115, 116, 205, 965
BsmAI GTCTC 2 cut(s) 582, 1231
BsmBI CGTCTC 1 cut(s) 1231
BsmI GAATGC 1 cut(s) 229
BsnI GGCC 5 cut(s) 209, 560, 569, 1699, 1893
Bsp119I TTCGAA 4 cut(s) 125, 324, 922, 1088
Bsp1286I GDGCHC 7 cut(s) 61, 155, 314, 393, 604, 1340, 1951
Bsp13I TCCGGA 1 cut(s) 604
Bsp1407I TGTACA 1 cut(s) 1666
Bsp143I GATC 3 cut(s) 298, 1355, 1878
Bsp19I CCATGG 2 cut(s) 331, 1469
BspANI GGCC 5 cut(s) 209, 560, 569, 1699, 1893
BspCNI CTCAG 1 cut(s) 1938
BspEI TCCGGA 1 cut(s) 604
BspHI TCATGA 1 cut(s) 1491
BspLI GGNNCC 1 cut(s) 10
BspPI GGATC 2 cut(s) 293, 1363
BspQI GCTCTTC 1 cut(s) 1192
BspT104I TTCGAA 4 cut(s) 125, 324, 922, 1088
BsrDI GCAATG 4 cut(s) 621, 950, 1045, 1683
BsrFI RCCGGY 3 cut(s) 556, 569, 1762
BsrGI TGTACA 1 cut(s) 1666
BsrI ACTGG 6 cut(s) 319, 959, 1545, 1554, 1647, 1962
BssAI RCCGGY 3 cut(s) 556, 569, 1762
BssECI CCNNGG 5 cut(s) 87, 210, 331, 1469, 1853
BssMI GATC 3 cut(s) 298, 1355, 1878
BssT1I CCWWGG 2 cut(s) 331, 1469
Bst2UI CCWGG 4 cut(s) 89, 212, 1750, 1855
Bst4CI ACNGT 8 cut(s) 419, 425, 480, 565, 838, 1242, 1594, 1953
Bst6I CTCTTC 3 cut(s) 1026, 1192, 1198
BstAPI GCANNNNNTGC 2 cut(s) 56, 623
BstAUI TGTACA 1 cut(s) 1666
BstBI TTCGAA 4 cut(s) 125, 324, 922, 1088
BstC8I GCNNGC 7 cut(s) 389, 558, 619, 649, 807, 1720, 1743
BstDEI CTNAG 2 cut(s) 1882, 1925
BstDSI CCRYGG 2 cut(s) 331, 1469
BstF5I GGATG 6 cut(s) 613, 649, 1003, 1083, 1691, 1734
BstKTI GATC 3 cut(s) 301, 1358, 1881
BstMAI GTCTC 2 cut(s) 582, 1231
BstMBI GATC 3 cut(s) 298, 1355, 1878
BstMWI GCNNNNNNNGC 8 cut(s) 47, 56, 444, 532, 566, 623, 737, 1307
BstNI CCWGG 4 cut(s) 89, 212, 1750, 1855
BstNSI RCATGY 2 cut(s) 920, 1867
BstSCI CCNGG 6 cut(s) 87, 210, 369, 382, 1748, 1853
BstSFI CTRYAG 1 cut(s) 849
BstSLI GKGCMC 4 cut(s) 314, 393, 1340, 1951
BstV1I GCAGC 8 cut(s) 460, 613, 880, 1053, 1218, 1515, 1725, 1836
BstX2I RGATCY 2 cut(s) 1355, 1878
BstYI RGATCY 2 cut(s) 1355, 1878
BsuI GTATCC 1 cut(s) 1424
BsuRI GGCC 5 cut(s) 209, 560, 569, 1699, 1893
BtgI CCRYGG 2 cut(s) 331, 1469
BtgZI GCGATG 1 cut(s) 824
BtrI CACGTC 2 cut(s) 655, 1045
BtsCI GGATG 6 cut(s) 613, 649, 1003, 1083, 1691, 1734
BtsI GCAGTG 1 cut(s) 1079
BtsIMutI CAGTG 8 cut(s) 312, 476, 561, 1079, 1547, 1640, 1949, 1955
Cac8I GCNNGC 7 cut(s) 389, 558, 619, 649, 807, 1720, 1743
CaiI CAGNNNCTG 1 cut(s) 296
CciI TCATGA 1 cut(s) 1491
Cfr10I RCCGGY 3 cut(s) 556, 569, 1762
Cfr13I GGNCC 4 cut(s) 8, 208, 1275, 1697
CseI GACGC 1 cut(s) 1237
Csp6I GTAC 3 cut(s) 355, 415, 1667
CviAII CATG 6 cut(s) 332, 917, 1470, 1492, 1602, 1864
CviQI GTAC 3 cut(s) 355, 415, 1667
DdeI CTNAG 2 cut(s) 1882, 1925
DpnI GATC 3 cut(s) 300, 1357, 1880
DpnII GATC 3 cut(s) 298, 1355, 1878
DraIII CACNNNGTG 1 cut(s) 1553
EaeI YGGCCR 2 cut(s) 558, 567
Eam1104I CTCTTC 3 cut(s) 1026, 1192, 1198
EarI CTCTTC 3 cut(s) 1026, 1192, 1198
EciI GGCGGA 1 cut(s) 185
Ecl136II GAGCTC 1 cut(s) 153
Eco130I CCWWGG 2 cut(s) 331, 1469
Eco24I GRGCYC 1 cut(s) 155
Eco47I GGWCC 2 cut(s) 8, 1275
Eco53kI GAGCTC 1 cut(s) 153
Eco57I CTGAAG 1 cut(s) 1050
EcoICRI GAGCTC 1 cut(s) 153
EcoO109I RGGNCCY 1 cut(s) 8
EcoRI GAATTC 1 cut(s) 127
EcoRII CCWGG 4 cut(s) 87, 210, 1748, 1853
EcoT14I CCWWGG 2 cut(s) 331, 1469
EcoT38I GRGCYC 1 cut(s) 155
ErhI CCWWGG 2 cut(s) 331, 1469
Esp3I CGTCTC 1 cut(s) 1231
FaeI CATG 6 cut(s) 335, 920, 1473, 1495, 1605, 1867
FatI CATG 6 cut(s) 331, 916, 1469, 1491, 1601, 1863
FauI CCCGC 3 cut(s) 380, 640, 1460
FokI GGATG 6 cut(s) 620, 656, 1010, 1090, 1698, 1741
FriOI GRGCYC 1 cut(s) 155
FspBI CTAG 3 cut(s) 249, 1214, 1817
GsaI CCCAGC 2 cut(s) 1017, 1698
GsuI CTGGAG 2 cut(s) 169, 548
HaeIII GGCC 5 cut(s) 209, 560, 569, 1699, 1893
HapII CCGG 7 cut(s) 199, 371, 384, 557, 570, 605, 1763
HgaI GACGC 1 cut(s) 1237
Hin1II CATG 6 cut(s) 335, 920, 1473, 1495, 1605, 1867
HincII GTYRAC 1 cut(s) 1245
HindII GTYRAC 1 cut(s) 1245
HindIII AAGCTT 1 cut(s) 533
HinfI GANTC 6 cut(s) 541, 1001, 1025, 1219, 1812, 1887
HpaI GTTAAC 1 cut(s) 1245
HpaII CCGG 7 cut(s) 199, 371, 384, 557, 570, 605, 1763
HphI GGTGA 2 cut(s) 1631, 1670
Hpy166II GTNNAC 3 cut(s) 312, 1245, 1667
Hpy188I TCNGA 7 cut(s) 274, 747, 770, 1030, 1113, 1586, 1928
Hpy188III TCNNGA 5 cut(s) 148, 605, 1343, 1492, 1683
Hpy8I GTNNAC 3 cut(s) 312, 1245, 1667
Hpy99I CGWCG 1 cut(s) 656
HpyAV CCTTC 3 cut(s) 634, 823, 1153
HpyCH4III ACNGT 8 cut(s) 419, 425, 480, 565, 838, 1242, 1594, 1953
HpyCH4IV ACGT 2 cut(s) 654, 1044
HpyF10VI GCNNNNNNNGC 8 cut(s) 47, 56, 444, 532, 566, 623, 737, 1307
HpyF3I CTNAG 2 cut(s) 1882, 1925
HpySE526I ACGT 2 cut(s) 654, 1044
Hsp92II CATG 6 cut(s) 335, 920, 1473, 1495, 1605, 1867
Kpn2I TCCGGA 1 cut(s) 604
KroI GCCGGC 1 cut(s) 556
KroNI GCCGGC 1 cut(s) 558
KspAI GTTAAC 1 cut(s) 1245
Kzo9I GATC 3 cut(s) 298, 1355, 1878
LguI GCTCTTC 1 cut(s) 1192
LmnI GCTCC 6 cut(s) 150, 158, 429, 607, 680, 1315
Lsp1109I GCAGC 8 cut(s) 460, 613, 880, 1053, 1218, 1515, 1725, 1836
LweI GCATC 6 cut(s) 154, 265, 634, 1725, 1775, 1946
MaeI CTAG 3 cut(s) 249, 1214, 1817
MaeII ACGT 2 cut(s) 654, 1044
MaeIII GTNAC 8 cut(s) 232, 286, 419, 691, 832, 943, 1836, 1953
MalI GATC 3 cut(s) 300, 1357, 1880
MboI GATC 3 cut(s) 298, 1355, 1878
MboII GAAGA 8 cut(s) 64, 128, 790, 1043, 1179, 1185, 1310, 1381
MfeI CAATTG 1 cut(s) 13
MflI RGATCY 2 cut(s) 1355, 1878
MhlI GDGCHC 7 cut(s) 61, 155, 314, 393, 604, 1340, 1951
MlyI GAGTC 2 cut(s) 550, 1896
MmeI TCCRAC 1 cut(s) 1136
MroI TCCGGA 1 cut(s) 604
MroNI GCCGGC 1 cut(s) 556
MseI TTAA 9 cut(s) 216, 264, 396, 405, 929, 963, 1244, 1625, 1650
MslI CAYNNNNRTG 1 cut(s) 1176
MspI CCGG 7 cut(s) 199, 371, 384, 557, 570, 605, 1763
MspR9I CCNGG 6 cut(s) 89, 212, 371, 384, 1750, 1855
MunI CAATTG 1 cut(s) 13
Mva1269I GAATGC 1 cut(s) 229
MvaI CCWGG 4 cut(s) 89, 212, 1750, 1855
MwoI GCNNNNNNNGC 8 cut(s) 47, 56, 444, 532, 566, 623, 737, 1307
NaeI GCCGGC 1 cut(s) 558
NciI CCSGG 2 cut(s) 371, 384
NcoI CCATGG 2 cut(s) 331, 1469
NdeII GATC 3 cut(s) 298, 1355, 1878
NgoMIV GCCGGC 1 cut(s) 556
NlaIII CATG 6 cut(s) 335, 920, 1473, 1495, 1605, 1867
NlaIV GGNNCC 1 cut(s) 10
NmeAIII GCCGAG 1 cut(s) 1260
NmuCI GTSAC 3 cut(s) 419, 1836, 1953
NspI RCATGY 2 cut(s) 920, 1867
NspV TTCGAA 4 cut(s) 125, 324, 922, 1088
PagI TCATGA 1 cut(s) 1491
PciI ACATGT 1 cut(s) 916
PciSI GCTCTTC 1 cut(s) 1192
PctI GAATGC 1 cut(s) 229
PdiI GCCGGC 1 cut(s) 558
PfeI GAWTC 4 cut(s) 1001, 1025, 1219, 1812
PleI GAGTC 2 cut(s) 549, 1895
PpsI GAGTC 2 cut(s) 549, 1895
PpuMI RGGWCCY 1 cut(s) 8
PscI ACATGT 1 cut(s) 916
PshBI ATTAAT 1 cut(s) 1650
PsiI TTATAA 1 cut(s) 1898
Psp124BI GAGCTC 1 cut(s) 155
Psp5II RGGWCCY 1 cut(s) 8
Psp6I CCWGG 4 cut(s) 87, 210, 1748, 1853
PspFI CCCAGC 2 cut(s) 1013, 1694
PspGI CCWGG 4 cut(s) 87, 210, 1748, 1853
PspN4I GGNNCC 1 cut(s) 10
PspPI GGNCC 4 cut(s) 8, 208, 1275, 1697
PspPPI RGGWCCY 1 cut(s) 8
PstNI CAGNNNCTG 1 cut(s) 296
PsuI RGATCY 2 cut(s) 1355, 1878
RsaI GTAC 3 cut(s) 356, 416, 1668
RsaNI GTAC 3 cut(s) 355, 415, 1667
RseI CAYNNNNRTG 1 cut(s) 1176
SacI GAGCTC 1 cut(s) 155
SapI GCTCTTC 1 cut(s) 1192
SaqAI TTAA 9 cut(s) 216, 264, 396, 405, 929, 963, 1244, 1625, 1650
Sau3AI GATC 3 cut(s) 298, 1355, 1878
Sau96I GGNCC 4 cut(s) 8, 208, 1275, 1697
ScaI AGTACT 1 cut(s) 356
SchI GAGTC 2 cut(s) 550, 1896
ScrFI CCNGG 6 cut(s) 89, 212, 371, 384, 1750, 1855
SduI GDGCHC 7 cut(s) 61, 155, 314, 393, 604, 1340, 1951
SfaNI GCATC 6 cut(s) 154, 265, 634, 1725, 1775, 1946
SfcI CTRYAG 1 cut(s) 849
SfiI GGCCNNNNNGGCC 1 cut(s) 566
SfuI TTCGAA 4 cut(s) 125, 324, 922, 1088
SinI GGWCC 2 cut(s) 8, 1275
SmiMI CAYNNNNRTG 1 cut(s) 1176
SmlI CTYRAG 2 cut(s) 1138, 1341
SmoI CTYRAG 2 cut(s) 1138, 1341
SspMI CTAG 3 cut(s) 249, 1214, 1817
SstI GAGCTC 1 cut(s) 155
StyD4I CCNGG 6 cut(s) 87, 210, 369, 382, 1748, 1853
StyI CCWWGG 2 cut(s) 331, 1469
TaaI ACNGT 8 cut(s) 419, 425, 480, 565, 838, 1242, 1594, 1953
TaiI ACGT 2 cut(s) 657, 1047
TaqI TCGA 8 cut(s) 125, 186, 324, 539, 922, 1088, 1631, 1733
TatI WGTACW 3 cut(s) 354, 414, 1666
TauI GCSGC 4 cut(s) 506, 1072, 1748, 1937
TfiI GAWTC 4 cut(s) 1001, 1025, 1219, 1812
Tru1I TTAA 9 cut(s) 216, 264, 396, 405, 929, 963, 1244, 1625, 1650
Tru9I TTAA 9 cut(s) 216, 264, 396, 405, 929, 963, 1244, 1625, 1650
TscAI CASTG 8 cut(s) 319, 483, 568, 1079, 1554, 1647, 1956, 1962
TseFI GTSAC 3 cut(s) 419, 1836, 1953
TseI GCWGC 8 cut(s) 473, 626, 893, 1066, 1231, 1528, 1738, 1849
Tsp45I GTSAC 3 cut(s) 419, 1836, 1953
TspDTI ATGAA 5 cut(s) 88, 1014, 1194, 1480, 1524
TspRI CASTG 8 cut(s) 319, 483, 568, 1079, 1554, 1647, 1956, 1962
VneI GTGCAC 1 cut(s) 310
VpaK11BI GGWCC 2 cut(s) 8, 1275
VspI ATTAAT 1 cut(s) 1650
XapI RAATTY 3 cut(s) 127, 550, 1457
XceI RCATGY 2 cut(s) 920, 1867
XspI CTAG 3 cut(s) 249, 1214, 1817
ZrmI AGTACT 1 cut(s) 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.