Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0013684

Physical Location & Seq

Genomic Coordinates Forward (+)

13103069 .. 13108264

Gene Structure 5196 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00228680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1512 bp

ATGGCCTCCCACGCCACCGCCGACGACCAAACCCTCAGGGCCGATAATTTCGTCAAGGCCATCACCGTTAGGGTTCCGTCGACGCCGCGGAAACTCCGCGACGACGACGGCGACGACGGCGACTCCACTTGTTGCTCGGCGCGGAGTAGTCGGGCTGAGCTGGCAGCCAATTTCAAGCGCAGCGTGGCGCCGGCGCGGGTCATGTTCTACGAGAGCGGGTCGTGGACCAACTTCCCGGGCCGGGTCGTCGAATTGCTCCGGTCCTCGGGTTTCTTTGAGCGCAAGGCGGTGCTCGACTTGGAAATCGAGGGGTCAACGTACCTGTTTGACTTCGCGCGCATGCTGCAGATTGATTCCGGCACCGGGAGTCAGCGATCGATTGCGTGGATTGACGACAACGGGAAATGCTTTTTTCCGAGGCGGTTCATCAGCGACGAGCTGGGCTGTGGCGGGTCGGATAGTCCGAAGATTGAAATCGAGATCCGGGTCGACGTTTCGGGTCGGAGTTCGGGTAAGAGAAAAAGAGGGGATGAGGTAGGAGAAGAAGAGAACGAAGTGACGTCGTTTAAGCGGCAGTCTCAGCCTCAGACAAACCCAAAGCCTCAAAGCTCTTCGGAAACTTGGCCGAATGTGAAATTGTTGACAGAGGGAGAGAGAGCTTACACGGCGGTGAGCAATTTCTTTCTCAAAGGGATCAGAAGAATCGATCCTGCGGCTACGATCAGTGCCATTCGTCAGTGTGTTCGCTCTGGGCCGTTGGATAAGGCTCGCTTGGAGGTCTTTCAGAAGCAAACTGAAATCACCAAGGCAGCTCGGGGCTCGGCCAATGTGGTCCACGCTTGGTACAGCGCGTCGTCTAGAGATATACAGGAGATTTTGACTCATGGGTTTGGCTTGCCCAGCAAGGTTTCTGGGTCTCATGGTGTTGGTCTCTACCTATCTCATTTATCTTTACCTTTTAGTAGTGGGCTCTTACAGCCCGATGATAATGGCGAAAAACATGTTCTTTTGTGCCGAGTTATATTAGGCAATGTTGAGAAAGTTGAGGCAGGGTCTCAGCAATGCTACCCTTCTAGTATGGAATTCGATACTGGTGTAGATGATCCTAGGACTCCTACGCGGTATGTGGTATGGCCCACTAATATGAATAGGCACGTTCTGCCGGAGTGTGTTGTGAGCTATAAACCTTCTGATCATGGGCCGGGTTCTCTGCCTAGAAAGTACCATGTTGCGGAATTGATTTCGAGGGTCAGGAATTCCCTACCCCCTTCAAAGGTTCAGCAATTGTCGAATCTGATACATGGTTTAAAGGCTGGGAAGTTAGCAAGAAATGATTTCTGCAGACAGTTTCGATTAGTTGTTGGGGAGCAGTTGCTGCGTTCTGCTATTCCTGAGATGCGTGGCTCGGAACAAGGTCATTTCTGTTCTATGACCCTAGTGTGTGTAAAAATTACACACATGGTGTTGGAGTCAAATATCAGCGTGACTTTGATTAAGAGGTTCAGGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0006950 GO:0006970 GO:0006979 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009651 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0010015 GO:0010101 GO:0010102 GO:0010154 GO:0010228 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0048316 GO:0048364 GO:0048527 GO:0048528 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PARP RST WWE

Protein Analysis

503

Amino Acids

55.81

Weight (kDa)

8.87

Isoelectric Point (pI)

45.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WWE_5	PF23467	58 - 138	2e-25	WWE domain
RST	PF12174	411 - 466	2.3e-10	RCD1-SRO-TAF4 (RST) plant domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013684)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g33460 FvH4_5g33460
malus_domestica	MD08G1211300.v1.1
prunus_persica	Prupe.1G543300_v2.0.a1
pyrus_communis	pycom08g18210 pycom15g35530
rosa_chinensis	RchiOBHm_Chr7g0232191
rosa_laevigata	RLG00000001378
rosa_multiflora	Rmu_co8293403.1_g000001 Rmu_sc0029785.1_g000001
rosa_roxburghii	Rroxscaffold_3G00228680
rosa_rugosa	Rorug07G0270100
rosa_samantha	Rh7AG424700 Rh7BG398800 Rh7CG445200 Rh7DG416700
rosa_wichuraiana	Rw7G035130 Rw7G035230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	563
AccB1I	GGYRCC	2 cut(s)	187, 359
AccBSI	CCGCTC	1 cut(s)	216
AccI	GTMKAC	2 cut(s)	80, 489
AccII	CGCG	8 cut(s)	88, 99, 142, 196, 335, 337, 851, 1120
AclWI	GGATC	4 cut(s)	475, 701, 701, 1097
AcoI	YGGCCR	2 cut(s)	623, 822
AcsI	RAATTY	2 cut(s)	1082, 1255
AcyI	GRCGYC	3 cut(s)	83, 188, 560
AdeI	CACNNNGTG	1 cut(s)	1462
AfaI	GTAC	3 cut(s)	320, 845, 1223
AfiI	CCNNNNNNNGG	5 cut(s)	241, 265, 363, 1231, 1273
AflIII	ACRYGT	1 cut(s)	1000
AgsI	TTSAA	3 cut(s)	175, 473, 1272
AleI	CACNNNNGTG	1 cut(s)	668
AluBI	AGCT	6 cut(s)	160, 439, 609, 659, 812, 1179
AluI	AGCT	6 cut(s)	160, 439, 609, 659, 812, 1179
Alw21I	GWGCWC	1 cut(s)	294
Alw26I	GTCTC	4 cut(s)	582, 921, 935, 1059
AlwI	GGATC	4 cut(s)	475, 701, 701, 1097
AlwNI	CAGNNNCTG	2 cut(s)	1375, 1509
Ama87I	CYCGRG	3 cut(s)	235, 265, 813
AoxI	GGCC	9 cut(s)	3, 39, 57, 238, 623, 752, 822, 1133, 1199
ApeKI	GCWGC	5 cut(s)	164, 180, 343, 809, 1375
ApoI	RAATTY	2 cut(s)	1082, 1255
AspA2I	CCTAGG	1 cut(s)	1106
AspLEI	GCGC	8 cut(s)	142, 180, 190, 196, 282, 337, 339, 851
AspS9I	GGNCC	8 cut(s)	39, 225, 238, 261, 752, 832, 1134, 1199
AsuC2I	CCSGG	6 cut(s)	236, 237, 242, 364, 485, 1203
AsuHPI	GGTGA	3 cut(s)	55, 682, 793
AvaI	CYCGRG	3 cut(s)	235, 265, 813
AvaII	GGWCC	3 cut(s)	225, 261, 832
AvrII	CCTAGG	1 cut(s)	1106
AxyI	CCTNAGG	1 cut(s)	35
BaeI	ACNNNNGTAYC	2 cut(s)	1080, 1113
BanI	GGYRCC	2 cut(s)	187, 359
BanII	GRGCYC	2 cut(s)	821, 972
Bbv12I	GWGCWC	1 cut(s)	294
BbvI	GCAGC	5 cut(s)	176, 192, 330, 821, 1362
BccI	CCATC	1 cut(s)	68
BceAI	ACGGC	4 cut(s)	124, 133, 681, 739
BclI	TGATCA	1 cut(s)	1192
BcnI	CCSGG	6 cut(s)	236, 237, 242, 364, 485, 1203
BcoDI	GTCTC	4 cut(s)	582, 921, 935, 1059
BfaI	CTAG	5 cut(s)	858, 1074, 1107, 1215, 1436
BfmI	CTRYAG	2 cut(s)	344, 1339
BfoI	RGCGCY	1 cut(s)	191
BisI	GCNGC	8 cut(s)	86, 165, 181, 344, 572, 714, 810, 1376
BlnI	CCTAGG	1 cut(s)	1106
BlpI	GCTNAGC	1 cut(s)	156
BlsI	GCNGC	8 cut(s)	87, 166, 182, 345, 573, 715, 811, 1377
Bme1390I	CCNGG	6 cut(s)	236, 237, 242, 364, 485, 1203
Bme18I	GGWCC	3 cut(s)	225, 261, 832
BmeT110I	CYCGRG	3 cut(s)	235, 265, 813
BmgT120I	GGNCC	8 cut(s)	39, 225, 238, 261, 752, 832, 1134, 1199
BmiI	GGNNCC	3 cut(s)	75, 189, 361
BmrFI	CCNGG	6 cut(s)	236, 237, 242, 364, 485, 1203
BmsI	GCATC	1 cut(s)	1386
Bpu1102I	GCTNAGC	1 cut(s)	156
BpuMI	CCSGG	6 cut(s)	236, 237, 242, 364, 485, 1203
Bsa29I	ATCGAT	2 cut(s)	377, 705
BsaBI	GATNNNNATC	1 cut(s)	473
BsaHI	GRCGYC	3 cut(s)	83, 188, 560
BsaI	GGTCTC	3 cut(s)	921, 935, 1059
BsaJI	CCNNGG	6 cut(s)	86, 235, 264, 416, 804, 1106
BsaWI	WCCGGW	1 cut(s)	258
BsaXI	ACNNNNNCTCC	4 cut(s)	107, 137, 496, 526
Bsc4I	CCNNNNNNNGG	5 cut(s)	241, 265, 363, 1231, 1273
Bse118I	RCCGGY	1 cut(s)	190
Bse1I	ACTGG	1 cut(s)	1096
Bse21I	CCTNAGG	1 cut(s)	35
Bse3DI	GCAATG	2 cut(s)	1036, 1067
Bse8I	GATNNNNATC	1 cut(s)	473
BseCI	ATCGAT	2 cut(s)	377, 705
BseDI	CCNNGG	6 cut(s)	86, 235, 264, 416, 804, 1106
BseGI	GGATG	1 cut(s)	535
BseJI	GATNNNNATC	1 cut(s)	473
BseLI	CCNNNNNNNGG	5 cut(s)	241, 265, 363, 1231, 1273
BseMI	GCAATG	2 cut(s)	1036, 1067
BseMII	CTCAG	6 cut(s)	49, 147, 593, 599, 1070, 1383
BseNI	ACTGG	1 cut(s)	1096
BsePI	GCGCGC	1 cut(s)	335
BseXI	GCAGC	5 cut(s)	176, 192, 330, 821, 1362
BseYI	CCCAGC	3 cut(s)	439, 899, 1313
Bsh1236I	CGCG	8 cut(s)	88, 99, 142, 196, 335, 337, 851, 1120
Bsh1285I	CGRYCG	1 cut(s)	377
BshFI	GGCC	9 cut(s)	5, 41, 59, 240, 625, 754, 824, 1135, 1201
BshNI	GGYRCC	2 cut(s)	187, 359
BshVI	ATCGAT	2 cut(s)	377, 705
BsiEI	CGRYCG	1 cut(s)	377
BsiHKAI	GWGCWC	1 cut(s)	294
BsiHKCI	CYCGRG	3 cut(s)	235, 265, 813
BsiSI	CCGG	9 cut(s)	191, 236, 241, 259, 357, 363, 484, 1163, 1202
BslI	CCNNNNNNNGG	5 cut(s)	241, 265, 363, 1231, 1273
BsmAI	GTCTC	4 cut(s)	582, 921, 935, 1059
BsnI	GGCC	9 cut(s)	5, 41, 59, 240, 625, 754, 824, 1135, 1201
Bso31I	GGTCTC	3 cut(s)	921, 935, 1059
BsoBI	CYCGRG	3 cut(s)	235, 265, 813
Bsp1286I	GDGCHC	3 cut(s)	294, 821, 972
Bsp143I	GATC	7 cut(s)	374, 480, 693, 706, 720, 1102, 1192
Bsp1720I	GCTNAGC	1 cut(s)	156
BspANI	GGCC	9 cut(s)	5, 41, 59, 240, 625, 754, 824, 1135, 1201
BspCNI	CTCAG	6 cut(s)	48, 148, 592, 598, 1069, 1384
BspDI	ATCGAT	2 cut(s)	377, 705
BspFNI	CGCG	8 cut(s)	88, 99, 142, 196, 335, 337, 851, 1120
BspLI	GGNNCC	3 cut(s)	75, 189, 361
BspMAI	CTGCAG	2 cut(s)	348, 1343
BspPI	GGATC	4 cut(s)	475, 701, 701, 1097
BspQI	GCTCTTC	1 cut(s)	616
BspT107I	GGYRCC	2 cut(s)	187, 359
BspTNI	GGTCTC	3 cut(s)	921, 935, 1059
BsrBI	CCGCTC	1 cut(s)	216
BsrDI	GCAATG	2 cut(s)	1036, 1067
BsrFI	RCCGGY	1 cut(s)	190
BsrI	ACTGG	1 cut(s)	1096
BssAI	RCCGGY	1 cut(s)	190
BssECI	CCNNGG	6 cut(s)	86, 235, 264, 416, 804, 1106
BssHII	GCGCGC	1 cut(s)	335
BssMI	GATC	7 cut(s)	374, 480, 693, 706, 720, 1102, 1192
BssNI	GRCGYC	3 cut(s)	83, 188, 560
BssT1I	CCWWGG	2 cut(s)	804, 1106
Bst4CI	ACNGT	2 cut(s)	67, 1347
Bst6I	CTCTTC	2 cut(s)	540, 616
BstACI	GRCGYC	3 cut(s)	83, 188, 560
BstAPI	GCANNNNNTGC	2 cut(s)	1159, 1375
BstC8I	GCNNGC	6 cut(s)	162, 192, 337, 341, 769, 896
BstDEI	CTNAG	6 cut(s)	35, 156, 579, 585, 1056, 1392
BstDSI	CCRYGG	1 cut(s)	86
BstF5I	GGATG	1 cut(s)	535
BstFNI	CGCG	8 cut(s)	88, 99, 142, 196, 335, 337, 851, 1120
BstH2I	RGCGCY	1 cut(s)	191
BstHHI	GCGC	8 cut(s)	142, 180, 190, 196, 282, 337, 339, 851
BstKTI	GATC	7 cut(s)	377, 483, 696, 709, 723, 1105, 1195
BstMAI	GTCTC	4 cut(s)	582, 921, 935, 1059
BstMBI	GATC	7 cut(s)	374, 480, 693, 706, 720, 1102, 1192
BstMCI	CGRYCG	1 cut(s)	377
BstNSI	RCATGY	2 cut(s)	343, 1004
BstSCI	CCNGG	6 cut(s)	234, 235, 240, 362, 483, 1201
BstSFI	CTRYAG	2 cut(s)	344, 1339
BstUI	CGCG	8 cut(s)	88, 99, 142, 196, 335, 337, 851, 1120
BstV1I	GCAGC	5 cut(s)	176, 192, 330, 821, 1362
BstX2I	RGATCY	1 cut(s)	480
BstYI	RGATCY	1 cut(s)	480
Bsu15I	ATCGAT	2 cut(s)	377, 705
Bsu36I	CCTNAGG	1 cut(s)	35
BsuRI	GGCC	9 cut(s)	5, 41, 59, 240, 625, 754, 824, 1135, 1201
BsuTUI	ATCGAT	2 cut(s)	377, 705
BtgI	CCRYGG	1 cut(s)	86
BtsCI	GGATG	1 cut(s)	535
BtsIMutI	CAGTG	2 cut(s)	730, 743
Cac8I	GCNNGC	6 cut(s)	162, 192, 337, 341, 769, 896
CaiI	CAGNNNCTG	2 cut(s)	1375, 1509
CfoI	GCGC	8 cut(s)	142, 180, 190, 196, 282, 337, 339, 851
Cfr10I	RCCGGY	1 cut(s)	190
Cfr13I	GGNCC	8 cut(s)	39, 225, 238, 261, 752, 832, 1134, 1199
Cfr42I	CCGCGG	1 cut(s)	89
Cfr9I	CCCGGG	1 cut(s)	235
ClaI	ATCGAT	2 cut(s)	377, 705
CseI	GACGC	2 cut(s)	91, 840
Csp6I	GTAC	3 cut(s)	319, 844, 1222
CviAII	CATG	9 cut(s)	202, 340, 884, 920, 1001, 1196, 1226, 1301, 1459
CviQI	GTAC	3 cut(s)	319, 844, 1222
DdeI	CTNAG	6 cut(s)	35, 156, 579, 585, 1056, 1392
DinI	GGCGCC	1 cut(s)	189
DpnI	GATC	7 cut(s)	376, 482, 695, 708, 722, 1104, 1194
DpnII	GATC	7 cut(s)	374, 480, 693, 706, 720, 1102, 1192
DraI	TTTAAA	1 cut(s)	1308
DraIII	CACNNNGTG	1 cut(s)	1462
EaeI	YGGCCR	2 cut(s)	623, 822
Eam1104I	CTCTTC	2 cut(s)	540, 616
EarI	CTCTTC	2 cut(s)	540, 616
Eco130I	CCWWGG	2 cut(s)	804, 1106
Eco24I	GRGCYC	2 cut(s)	821, 972
Eco31I	GGTCTC	3 cut(s)	921, 935, 1059
Eco47I	GGWCC	3 cut(s)	225, 261, 832
Eco81I	CCTNAGG	1 cut(s)	35
Eco88I	CYCGRG	3 cut(s)	235, 265, 813
EcoRI	GAATTC	2 cut(s)	1082, 1255
EcoT14I	CCWWGG	2 cut(s)	804, 1106
EcoT38I	GRGCYC	2 cut(s)	821, 972
EgeI	GGCGCC	1 cut(s)	189
EheI	GGCGCC	1 cut(s)	189
ErhI	CCWWGG	2 cut(s)	804, 1106
FaeI	CATG	9 cut(s)	205, 343, 887, 923, 1004, 1199, 1229, 1304, 1462
FalI	AAGNNNNNCTT	2 cut(s)	755, 787
FatI	CATG	9 cut(s)	201, 339, 883, 919, 1000, 1195, 1225, 1300, 1458
FauI	CCCGC	3 cut(s)	189, 209, 443
FbaI	TGATCA	1 cut(s)	1192
FblI	GTMKAC	2 cut(s)	80, 489
Fnu4HI	GCNGC	8 cut(s)	86, 165, 181, 344, 572, 714, 810, 1376
FokI	GGATG	1 cut(s)	542
FriOI	GRGCYC	2 cut(s)	821, 972
Fsp4HI	GCNGC	8 cut(s)	86, 165, 181, 344, 572, 714, 810, 1376
FspBI	CTAG	5 cut(s)	858, 1074, 1107, 1215, 1436
GlaI	GCGC	8 cut(s)	141, 179, 189, 195, 281, 336, 338, 850
GluI	GCNGC	8 cut(s)	86, 165, 181, 344, 572, 714, 810, 1376
GsaI	CCCAGC	3 cut(s)	443, 903, 1317
HaeII	RGCGCY	1 cut(s)	191
HaeIII	GGCC	9 cut(s)	5, 41, 59, 240, 625, 754, 824, 1135, 1201
HapII	CCGG	9 cut(s)	191, 236, 241, 259, 357, 363, 484, 1163, 1202
HgaI	GACGC	2 cut(s)	91, 840
HhaI	GCGC	8 cut(s)	142, 180, 190, 196, 282, 337, 339, 851
Hin1I	GRCGYC	3 cut(s)	83, 188, 560
Hin1II	CATG	9 cut(s)	205, 343, 887, 923, 1004, 1199, 1229, 1304, 1462
Hin6I	GCGC	8 cut(s)	140, 178, 188, 194, 280, 335, 337, 849
HinP1I	GCGC	8 cut(s)	140, 178, 188, 194, 280, 335, 337, 849
HincII	GTYRAC	4 cut(s)	81, 315, 490, 642
HindII	GTYRAC	4 cut(s)	81, 315, 490, 642
HinfI	GANTC	8 cut(s)	122, 353, 367, 702, 880, 1111, 1291, 1469
HpaII	CCGG	9 cut(s)	191, 236, 241, 259, 357, 363, 484, 1163, 1202
HphI	GGTGA	3 cut(s)	55, 682, 793
Hpy166II	GTNNAC	6 cut(s)	81, 225, 315, 490, 642, 835
Hpy188III	TCNNGA	4 cut(s)	478, 858, 1252, 1391
Hpy8I	GTNNAC	6 cut(s)	81, 225, 315, 490, 642, 835
HpyAV	CCTTC	3 cut(s)	1080, 1197, 1278
HpyCH4III	ACNGT	2 cut(s)	67, 1347
HpyCH4IV	ACGT	4 cut(s)	317, 492, 560, 1155
HpyCH4V	TGCA	2 cut(s)	346, 1341
HpyF3I	CTNAG	6 cut(s)	35, 156, 579, 585, 1056, 1392
HpySE526I	ACGT	4 cut(s)	317, 492, 560, 1155
Hsp92I	GRCGYC	3 cut(s)	83, 188, 560
Hsp92II	CATG	9 cut(s)	205, 343, 887, 923, 1004, 1199, 1229, 1304, 1462
HspAI	GCGC	8 cut(s)	140, 178, 188, 194, 280, 335, 337, 849
KasI	GGCGCC	1 cut(s)	187
KroI	GCCGGC	1 cut(s)	190
KroNI	GCCGGC	1 cut(s)	192
Ksp22I	TGATCA	1 cut(s)	1192
KspI	CCGCGG	1 cut(s)	89
Kzo9I	GATC	7 cut(s)	374, 480, 693, 706, 720, 1102, 1192
LguI	GCTCTTC	1 cut(s)	616
LmnI	GCTCC	2 cut(s)	261, 1366
Lsp1109I	GCAGC	5 cut(s)	176, 192, 330, 821, 1362
LweI	GCATC	1 cut(s)	1386
MaeI	CTAG	5 cut(s)	858, 1074, 1107, 1215, 1436
MaeII	ACGT	4 cut(s)	317, 492, 560, 1155
MaeIII	GTNAC	2 cut(s)	556, 1483
MalI	GATC	7 cut(s)	376, 482, 695, 708, 722, 1104, 1194
MbiI	CCGCTC	1 cut(s)	216
MboI	GATC	7 cut(s)	374, 480, 693, 706, 720, 1102, 1192
MboII	GAAGA	5 cut(s)	478, 554, 557, 603, 711
MfeI	CAATTG	1 cut(s)	1283
MflI	RGATCY	1 cut(s)	480
MhlI	GDGCHC	3 cut(s)	294, 821, 972
Mly113I	GGCGCC	1 cut(s)	188
MlyI	GAGTC	5 cut(s)	116, 376, 874, 1105, 1478
MmeI	TCCRAC	4 cut(s)	435, 482, 738, 1446
MreI	CGCCGGCG	1 cut(s)	190
MroNI	GCCGGC	1 cut(s)	190
MseI	TTAA	3 cut(s)	567, 1307, 1494
MslI	CAYNNNNRTG	2 cut(s)	668, 1142
MspA1I	CMGCKG	1 cut(s)	88
MspI	CCGG	9 cut(s)	191, 236, 241, 259, 357, 363, 484, 1163, 1202
MspR9I	CCNGG	6 cut(s)	236, 237, 242, 364, 485, 1203
MunI	CAATTG	1 cut(s)	1283
MvnI	CGCG	8 cut(s)	88, 99, 142, 196, 335, 337, 851, 1120
NaeI	GCCGGC	1 cut(s)	192
NarI	GGCGCC	1 cut(s)	188
NciI	CCSGG	6 cut(s)	236, 237, 242, 364, 485, 1203
NdeII	GATC	7 cut(s)	374, 480, 693, 706, 720, 1102, 1192
NgoMIV	GCCGGC	1 cut(s)	190
NlaIII	CATG	9 cut(s)	205, 343, 887, 923, 1004, 1199, 1229, 1304, 1462
NlaIV	GGNNCC	3 cut(s)	75, 189, 361
NmeAIII	GCCGAG	3 cut(s)	116, 800, 1040
NmuCI	GTSAC	2 cut(s)	556, 1483
NspI	RCATGY	2 cut(s)	343, 1004
OliI	CACNNNNGTG	1 cut(s)	668
PaeI	GCATGC	1 cut(s)	343
PauI	GCGCGC	1 cut(s)	335
PciI	ACATGT	1 cut(s)	1000
PciSI	GCTCTTC	1 cut(s)	616
PcsI	WCGNNNNNNNCGW	4 cut(s)	18, 108, 111, 461
PdiI	GCCGGC	1 cut(s)	192
PfeI	GAWTC	3 cut(s)	353, 702, 1291
PkrI	GCNGC	8 cut(s)	87, 166, 182, 345, 573, 715, 811, 1377
Ple19I	CGATCG	1 cut(s)	377
PleI	GAGTC	5 cut(s)	116, 375, 874, 1105, 1477
PluTI	GGCGCC	1 cut(s)	191
PpsI	GAGTC	5 cut(s)	116, 375, 874, 1105, 1477
PscI	ACATGT	1 cut(s)	1000
PspFI	CCCAGC	3 cut(s)	439, 899, 1313
PspN4I	GGNNCC	3 cut(s)	75, 189, 361
PspPI	GGNCC	8 cut(s)	39, 225, 238, 261, 752, 832, 1134, 1199
PstI	CTGCAG	2 cut(s)	348, 1343
PstNI	CAGNNNCTG	2 cut(s)	1375, 1509
PsuI	RGATCY	1 cut(s)	480
PteI	GCGCGC	1 cut(s)	335
PvuI	CGATCG	1 cut(s)	377
RsaI	GTAC	3 cut(s)	320, 845, 1223
RsaNI	GTAC	3 cut(s)	319, 844, 1222
RseI	CAYNNNNRTG	2 cut(s)	668, 1142
SacII	CCGCGG	1 cut(s)	89
SalI	GTCGAC	2 cut(s)	79, 488
SapI	GCTCTTC	1 cut(s)	616
SaqAI	TTAA	3 cut(s)	567, 1307, 1494
SatI	GCNGC	8 cut(s)	86, 165, 181, 344, 572, 714, 810, 1376
Sau3AI	GATC	7 cut(s)	374, 480, 693, 706, 720, 1102, 1192
Sau96I	GGNCC	8 cut(s)	39, 225, 238, 261, 752, 832, 1134, 1199
SchI	GAGTC	5 cut(s)	116, 376, 874, 1105, 1478
ScrFI	CCNGG	6 cut(s)	236, 237, 242, 364, 485, 1203
SduI	GDGCHC	3 cut(s)	294, 821, 972
SfaNI	GCATC	1 cut(s)	1386
SfcI	CTRYAG	2 cut(s)	344, 1339
SfoI	GGCGCC	1 cut(s)	189
Sfr303I	CCGCGG	1 cut(s)	89
SgrAI	CRCCGGYG	1 cut(s)	190
SgrBI	CCGCGG	1 cut(s)	89
SgrDI	CGTCGACG	1 cut(s)	79
SinI	GGWCC	3 cut(s)	225, 261, 832
SmaI	CCCGGG	1 cut(s)	237
SmiMI	CAYNNNNRTG	2 cut(s)	668, 1142
SphI	GCATGC	1 cut(s)	343
SspDI	GGCGCC	1 cut(s)	187
SspMI	CTAG	5 cut(s)	858, 1074, 1107, 1215, 1436
StyD4I	CCNGG	6 cut(s)	234, 235, 240, 362, 483, 1201
StyI	CCWWGG	2 cut(s)	804, 1106
TaaI	ACNGT	2 cut(s)	67, 1347
TaiI	ACGT	4 cut(s)	320, 495, 563, 1158
TauI	GCSGC	3 cut(s)	88, 574, 716
TfiI	GAWTC	3 cut(s)	353, 702, 1291
Tru1I	TTAA	3 cut(s)	567, 1307, 1494
Tru9I	TTAA	3 cut(s)	567, 1307, 1494
TscAI	CASTG	2 cut(s)	730, 743
TseFI	GTSAC	2 cut(s)	556, 1483
TseI	GCWGC	5 cut(s)	164, 180, 343, 809, 1375
Tsp45I	GTSAC	2 cut(s)	556, 1483
TspDTI	ATGAA	2 cut(s)	415, 1160
TspGWI	ACGGA	1 cut(s)	66
TspMI	CCCGGG	1 cut(s)	235
TspRI	CASTG	2 cut(s)	730, 743
VpaK11BI	GGWCC	3 cut(s)	225, 261, 832
XapI	RAATTY	2 cut(s)	1082, 1255
XbaI	TCTAGA	1 cut(s)	857
XceI	RCATGY	2 cut(s)	343, 1004
XmaI	CCCGGG	1 cut(s)	235
XmaJI	CCTAGG	1 cut(s)	1106
XmiI	GTMKAC	2 cut(s)	80, 489
XspI	CTAG	5 cut(s)	858, 1074, 1107, 1215, 1436
ZraI	GACGTC	1 cut(s)	561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.