Rroxscaffold_3G00229650

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0017013
Physical Location & Seq
Reverse (-)
14194775 .. 14195460
686 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00229650.1

Sequence Viewer

Length: 483 bp
ATGAAGGAAATCAAAATGTCCAATTATGGTAAGGTGGAGGTGGCTATTGAGATCAAGGCTGGTGCTGACGAGTTTTATGATATGGTTGTAAACAGACCACACCATGTACCCAACAACAAACTTGATGGTGTTGCAACTAATCAAGCTGACAAGTCCTCATCCGCAAAAGTCGGTTCTATCTCATCCTGGAAGTATTTCCAAGATGGGAAAGCTAAAGTATCCCAGGAGATGATTGAAGCCCTGGACAGCAAGAAACATTCAGCAACTTGGAAAGTCGTTGAAGGAGAACTTCTTGATGATTACAAGAGCTTCAGGTTCATCCTGCAAATTATTACCACTCCAAACCCGAAAGCAACGGTGCATGTGATTTTGGAGTATGAGAAGATGCATGACGATGTTGCAGACCCATATTTTATGCTCCAGGCGGTAACTGATAACATCAAAGGCGTCGATGCTCAACTATTCACTCAGAGCAGGACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

160

Amino Acids

18.04

Weight (kDa)

5.94

Isoelectric Point (pI)

42.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 10 - 155 8e-34 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 162, 425
AcuI CTGAAG 1 cut(s) 295
AcyI GRCGYC 1 cut(s) 447
AfaI GTAC 1 cut(s) 108
AgsI TTSAA 2 cut(s) 236, 281
AjnI CCWGG 4 cut(s) 185, 222, 240, 420
AluBI AGCT 3 cut(s) 146, 212, 309
AluI AGCT 3 cut(s) 146, 212, 309
AlwNI CAGNNNCTG 1 cut(s) 480
Asp700I GAANNNNTTC 1 cut(s) 194
AspS9I GGNCC 1 cut(s) 477
AvaII GGWCC 1 cut(s) 477
BccI CCATC 2 cut(s) 119, 197
BciT130I CCWGG 4 cut(s) 187, 224, 242, 422
BciVI GTATCC 1 cut(s) 229
BfuI GTATCC 1 cut(s) 229
Bme1390I CCNGG 4 cut(s) 187, 224, 242, 422
Bme18I GGWCC 1 cut(s) 477
BmgT120I GGNCC 1 cut(s) 477
BmrFI CCNGG 4 cut(s) 187, 224, 242, 422
BmsI GCATC 2 cut(s) 375, 442
BpmI CTGGAG 1 cut(s) 404
BsaHI GRCGYC 1 cut(s) 447
BsaJI CCNNGG 2 cut(s) 222, 240
BseBI CCWGG 4 cut(s) 187, 224, 242, 422
BseDI CCNNGG 2 cut(s) 222, 240
BseGI GGATG 3 cut(s) 158, 182, 318
BseMII CTCAG 1 cut(s) 482
Bsp143I GATC 1 cut(s) 51
BspACI CCGC 2 cut(s) 162, 425
BspCNI CTCAG 1 cut(s) 481
BssECI CCNNGG 2 cut(s) 222, 240
BssMI GATC 1 cut(s) 51
BssNI GRCGYC 1 cut(s) 447
Bst2UI CCWGG 4 cut(s) 187, 224, 242, 422
Bst4CI ACNGT 1 cut(s) 358
BstACI GRCGYC 1 cut(s) 447
BstDEI CTNAG 1 cut(s) 468
BstF5I GGATG 3 cut(s) 158, 182, 318
BstKTI GATC 1 cut(s) 54
BstMBI GATC 1 cut(s) 51
BstNI CCWGG 4 cut(s) 187, 224, 242, 422
BstNSI RCATGY 1 cut(s) 365
BstSCI CCNGG 4 cut(s) 185, 222, 240, 420
BsuI GTATCC 1 cut(s) 229
BtsCI GGATG 3 cut(s) 158, 182, 318
CaiI CAGNNNCTG 1 cut(s) 480
Cfr13I GGNCC 1 cut(s) 477
CseI GACGC 1 cut(s) 436
Csp6I GTAC 1 cut(s) 107
CviAII CATG 3 cut(s) 104, 362, 389
CviJI RGCY 6 cut(s) 44, 59, 146, 212, 239, 309
CviKI_1 RGCY 6 cut(s) 44, 59, 146, 212, 239, 309
CviQI GTAC 1 cut(s) 107
DdeI CTNAG 1 cut(s) 468
DpnI GATC 1 cut(s) 53
DpnII GATC 1 cut(s) 51
Eco47I GGWCC 1 cut(s) 477
Eco57I CTGAAG 1 cut(s) 295
EcoO109I RGGNCCY 1 cut(s) 477
EcoRII CCWGG 4 cut(s) 185, 222, 240, 420
EcoT22I ATGCAT 1 cut(s) 390
FaeI CATG 3 cut(s) 107, 365, 392
FaiI YATR 9 cut(s) 27, 78, 83, 105, 363, 378, 390, 409, 416
FalI AAGNNNNNCTT 2 cut(s) 273, 305
FatI CATG 3 cut(s) 103, 361, 388
FokI GGATG 3 cut(s) 145, 169, 305
GsuI CTGGAG 1 cut(s) 404
HgaI GACGC 1 cut(s) 436
Hin1I GRCGYC 1 cut(s) 447
Hin1II CATG 3 cut(s) 107, 365, 392
Hpy166II GTNNAC 1 cut(s) 91
Hpy188I TCNGA 1 cut(s) 471
Hpy188III TCNNGA 1 cut(s) 293
Hpy8I GTNNAC 1 cut(s) 91
Hpy99I CGWCG 1 cut(s) 452
HpyAV CCTTC 1 cut(s) 275
HpyCH4III ACNGT 1 cut(s) 358
HpyCH4V TGCA 5 cut(s) 134, 325, 361, 388, 401
HpyF3I CTNAG 1 cut(s) 468
Hsp92I GRCGYC 1 cut(s) 447
Hsp92II CATG 3 cut(s) 107, 365, 392
Kzo9I GATC 1 cut(s) 51
LmnI GCTCC 1 cut(s) 423
LweI GCATC 2 cut(s) 375, 442
MaeIII GTNAC 1 cut(s) 427
MalI GATC 1 cut(s) 53
MboI GATC 1 cut(s) 51
MboII GAAGA 1 cut(s) 394
MluCI AATT 2 cut(s) 22, 327
MnlI CCTC 2 cut(s) 31, 166
Mph1103I ATGCAT 1 cut(s) 390
MroXI GAANNNNTTC 1 cut(s) 194
MslI CAYNNNNRTG 1 cut(s) 393
MspR9I CCNGG 4 cut(s) 187, 224, 242, 422
MvaI CCWGG 4 cut(s) 187, 224, 242, 422
NdeII GATC 1 cut(s) 51
NlaIII CATG 3 cut(s) 107, 365, 392
NsiI ATGCAT 1 cut(s) 390
NspI RCATGY 1 cut(s) 365
PdmI GAANNNNTTC 1 cut(s) 194
PfoI TCCNGGA 1 cut(s) 185
PpuMI RGGWCCY 1 cut(s) 477
Psp5II RGGWCCY 1 cut(s) 477
Psp6I CCWGG 4 cut(s) 185, 222, 240, 420
PspGI CCWGG 4 cut(s) 185, 222, 240, 420
PspPI GGNCC 1 cut(s) 477
PspPPI RGGWCCY 1 cut(s) 477
PstNI CAGNNNCTG 1 cut(s) 480
RsaI GTAC 1 cut(s) 108
RsaNI GTAC 1 cut(s) 107
RseI CAYNNNNRTG 1 cut(s) 393
Sau3AI GATC 1 cut(s) 51
Sau96I GGNCC 1 cut(s) 477
ScrFI CCNGG 4 cut(s) 187, 224, 242, 422
SetI ASST 7 cut(s) 36, 42, 148, 214, 311, 317, 482
SfaNI GCATC 2 cut(s) 375, 442
SinI GGWCC 1 cut(s) 477
SmiMI CAYNNNNRTG 1 cut(s) 393
Sse9I AATT 2 cut(s) 22, 327
SsiI CCGC 2 cut(s) 162, 425
StyD4I CCNGG 4 cut(s) 185, 222, 240, 420
TaaI ACNGT 1 cut(s) 358
TaqI TCGA 1 cut(s) 450
TasI AATT 2 cut(s) 22, 327
TspDTI ATGAA 2 cut(s) 17, 307
VpaK11BI GGWCC 1 cut(s) 477
XceI RCATGY 1 cut(s) 365
XmnI GAANNNNTTC 1 cut(s) 194
Zsp2I ATGCAT 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.