Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0003109

Physical Location & Seq

Genomic Coordinates Forward (+)

24774297 .. 24782021

Gene Structure 7725 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0263400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGAATCGGCACCACGACCCCAATCCCTTTGAAGAAGAGGTCGAGGTCAATCCCTTTTCGAATGGGAAGTCACGGATTCCACCGTTGGCATCTGAACCTCTTGGTTTTGGACAGAAACATGATGCAACAGTTGATATACCATTGGACACAATGAGTGATTCTAAGCAAAAGGCAAAAGAGCTTGCAACCTGGGAAGCAGATCTCAAGAGAAGAGAAAAGGATATCAAACGAAGAGAGGATTCTGTTGCAAAAGCTGGTGTCCCCGATGATGGAAAAAATTGGCCTCCATTCTTTCCGATTATTCACCATGATATTGCCAATGAAATTCCTGTACATGCTCAAAGGTTACAGTATATGGCTTTTGCAAGTTGGTTAGGTATAGTTCTTTGCCTAGTGTTCAATGTAATTGCTGTAATCATCTGTTGGGTTAGAGGAGGAGGTTCCAAAATATTTTTCCTTGCAGTCATCTATGCTCTACTTGGAATACCACTCTCATATGTGCTGTGGTACAGGCCCCTCTATCGGGCAATGAGGACAGATAGTGCCTTGAAGTTTGGTTGGTTTTTCCTGTTCTACATGTTCCATATTGGGTTTTGCATTATCGCGGCTATAGCTCCTCCAATTGTCTTTCAAGGAAAATCACTGACGGGCATTCTTGCTGCAATTGATGTCTTTTCTGACCATGCGGTGGTAGGGATATTCTACTTAATTGGGTTTGCCTTGTTTTGCTTAGAGACGCTTCTAAGCTTTTGGGTACTCCAGAAAATATACGTGTATTTCAGGGGGCACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010143 GO:0010166 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043170 GO:0043565 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901568 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

264

Amino Acids

30.05

Weight (kDa)

8.28

Isoelectric Point (pI)

42.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SCAMP	PF04144	92 - 262	6.8e-61	SCAMP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15360 AT1G15360
fragaria_vesca	FvH4_1g03190 FvH4_6g29930
malus_domestica	MD02G1030900.v1.1 MD15G1172600.v1.1 MD17G1209000.v1.1
prunus_persica	Prupe.3G084600_v2.0.a1 Prupe.7G243600_v2.0.a1
pyrus_communis	pycom15g15430
rosa_chinensis	RchiOBHm_Chr2g0088321 RchiOBHm_Chr2g0135921 RchiOBHm_Chr7g0230931
rosa_laevigata	RLG00000015943 RLG00000019490
rosa_multiflora	Rmu_sc0000483.1_g000022 Rmu_sc0004235.1_g000029 Rmu_sc0004243.1_g000002
rosa_roxburghii	Rroxscaffold_2G00108770 Rroxscaffold_2G00152750 Rroxscaffold_3G00229670
rosa_rugosa	Rorug01G0482900 Rorug02G0326900 Rorug07G0263300 Rorug07G0263400
rosa_samantha	Rh2AG378500 Rh2BG037200 Rh2BG385100 Rh2CG038300 Rh2CG364200 Rh2DG401400 Rh7AG416500 Rh7CG435700 Rh7DG410800
rosa_wichuraiana	Rw2G003000 Rw2G030840 Rw7G034490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	9
AccB7I	CCANNNNNTGG	1 cut(s)	688
AccII	CGCG	1 cut(s)	605
AciI	CCGC	2 cut(s)	605, 686
AcsI	RAATTY	1 cut(s)	324
AfaI	GTAC	3 cut(s)	333, 509, 756
AfiI	CCNNNNNNNGG	4 cut(s)	269, 522, 523, 688
AflIII	ACRYGT	2 cut(s)	576, 771
AgsI	TTSAA	4 cut(s)	32, 400, 550, 632
AjnI	CCWGG	1 cut(s)	188
AjuI	GAANNNNNNNTTGG	2 cut(s)	437, 469
AluBI	AGCT	4 cut(s)	181, 254, 614, 747
AluI	AGCT	4 cut(s)	181, 254, 614, 747
Alw26I	GTCTC	1 cut(s)	728
AoxI	GGCC	2 cut(s)	281, 512
ApeKI	GCWGC	1 cut(s)	659
ApoI	RAATTY	1 cut(s)	324
ArsI	GACNNNNNNTTYG	2 cut(s)	53, 85
AspS9I	GGNCC	1 cut(s)	513
AsuHPI	GGTGA	1 cut(s)	296
AsuII	TTCGAA	1 cut(s)	59
BaeGI	GKGCMC	1 cut(s)	789
BanI	GGYRCC	1 cut(s)	9
BbvI	GCAGC	1 cut(s)	646
BccI	CCATC	1 cut(s)	263
BciT130I	CCWGG	1 cut(s)	190
BcoDI	GTCTC	1 cut(s)	728
BfaI	CTAG	1 cut(s)	392
BfmI	CTRYAG	1 cut(s)	609
BglII	AGATCT	1 cut(s)	199
BisI	GCNGC	2 cut(s)	606, 660
BlsI	GCNGC	2 cut(s)	607, 661
Bme1390I	CCNGG	1 cut(s)	190
BmgT120I	GGNCC	1 cut(s)	513
BmiI	GGNNCC	3 cut(s)	11, 442, 515
BmrFI	CCNGG	1 cut(s)	190
BmsI	GCATC	2 cut(s)	98, 112
BpmI	CTGGAG	1 cut(s)	743
Bpu14I	TTCGAA	1 cut(s)	59
BpuEI	CTTGAG	1 cut(s)	188
BsaAI	YACGTR	1 cut(s)	772
BsaJI	CCNNGG	1 cut(s)	189
Bsc4I	CCNNNNNNNGG	4 cut(s)	269, 522, 523, 688
Bse3DI	GCAATG	1 cut(s)	534
BseBI	CCWGG	1 cut(s)	190
BseDI	CCNNGG	1 cut(s)	189
BseLI	CCNNNNNNNGG	4 cut(s)	269, 522, 523, 688
BseMI	GCAATG	1 cut(s)	534
BseRI	GAGGAG	3 cut(s)	447, 450, 606
BseSI	GKGCMC	1 cut(s)	789
BseXI	GCAGC	1 cut(s)	646
Bsh1236I	CGCG	1 cut(s)	605
BshFI	GGCC	2 cut(s)	283, 514
BshNI	GGYRCC	1 cut(s)	9
BslFI	GGGAC	1 cut(s)	245
BslI	CCNNNNNNNGG	4 cut(s)	269, 522, 523, 688
BsmAI	GTCTC	1 cut(s)	728
BsmBI	CGTCTC	1 cut(s)	728
BsmFI	GGGAC	1 cut(s)	245
BsmI	GAATGC	1 cut(s)	651
BsnI	GGCC	2 cut(s)	283, 514
Bsp119I	TTCGAA	1 cut(s)	59
Bsp1286I	GDGCHC	1 cut(s)	789
Bsp1407I	TGTACA	1 cut(s)	331
Bsp143I	GATC	1 cut(s)	199
BspACI	CCGC	2 cut(s)	605, 686
BspANI	GGCC	2 cut(s)	283, 514
BspFNI	CGCG	1 cut(s)	605
BspLI	GGNNCC	3 cut(s)	11, 442, 515
BspT104I	TTCGAA	1 cut(s)	59
BspT107I	GGYRCC	1 cut(s)	9
BsrDI	GCAATG	1 cut(s)	534
BsrGI	TGTACA	1 cut(s)	331
BssECI	CCNNGG	1 cut(s)	189
BssMI	GATC	1 cut(s)	199
Bst2UI	CCWGG	1 cut(s)	190
Bst4CI	ACNGT	3 cut(s)	84, 130, 351
Bst6I	CTCTTC	3 cut(s)	30, 205, 226
BstAUI	TGTACA	1 cut(s)	331
BstBAI	YACGTR	1 cut(s)	772
BstBI	TTCGAA	1 cut(s)	59
BstC8I	GCNNGC	1 cut(s)	183
BstDEI	CTNAG	3 cut(s)	162, 730, 743
BstFNI	CGCG	1 cut(s)	605
BstKTI	GATC	1 cut(s)	202
BstMAI	GTCTC	1 cut(s)	728
BstMBI	GATC	1 cut(s)	199
BstMWI	GCNNNNNNNGC	1 cut(s)	611
BstNI	CCWGG	1 cut(s)	190
BstNSI	RCATGY	2 cut(s)	338, 580
BstSCI	CCNGG	1 cut(s)	188
BstSFI	CTRYAG	1 cut(s)	609
BstSLI	GKGCMC	1 cut(s)	789
BstUI	CGCG	1 cut(s)	605
BstV1I	GCAGC	1 cut(s)	646
BstX2I	RGATCY	1 cut(s)	199
BstYI	RGATCY	1 cut(s)	199
BsuRI	GGCC	2 cut(s)	283, 514
BtsIMutI	CAGTG	1 cut(s)	641
Cac8I	GCNNGC	1 cut(s)	183
Cfr13I	GGNCC	1 cut(s)	513
CseI	GACGC	1 cut(s)	745
Csp6I	GTAC	3 cut(s)	332, 508, 755
CviAII	CATG	5 cut(s)	119, 308, 335, 577, 683
CviJI	RGCY	8 cut(s)	181, 254, 283, 359, 514, 608, 614, 747
CviKI_1	RGCY	8 cut(s)	181, 254, 283, 359, 514, 608, 614, 747
CviQI	GTAC	3 cut(s)	332, 508, 755
DdeI	CTNAG	3 cut(s)	162, 730, 743
DpnI	GATC	1 cut(s)	201
DpnII	GATC	1 cut(s)	199
Eam1104I	CTCTTC	3 cut(s)	30, 205, 226
EarI	CTCTTC	3 cut(s)	30, 205, 226
Eco32I	GATATC	1 cut(s)	223
EcoO109I	RGGNCCY	1 cut(s)	513
EcoRII	CCWGG	1 cut(s)	188
EcoRV	GATATC	1 cut(s)	223
Esp3I	CGTCTC	1 cut(s)	728
FaeI	CATG	5 cut(s)	122, 311, 338, 580, 686
FaqI	GGGAC	1 cut(s)	245
FatI	CATG	5 cut(s)	118, 307, 334, 576, 682
FauNDI	CATATG	1 cut(s)	496
Fnu4HI	GCNGC	2 cut(s)	606, 660
Fsp4HI	GCNGC	2 cut(s)	606, 660
FspBI	CTAG	1 cut(s)	392
GluI	GCNGC	2 cut(s)	606, 660
GsuI	CTGGAG	1 cut(s)	743
HaeIII	GGCC	2 cut(s)	283, 514
HgaI	GACGC	1 cut(s)	745
Hin1II	CATG	5 cut(s)	122, 311, 338, 580, 686
HindIII	AAGCTT	1 cut(s)	745
HinfI	GANTC	4 cut(s)	4, 76, 158, 239
HphI	GGTGA	1 cut(s)	296
Hpy188I	TCNGA	3 cut(s)	94, 297, 679
Hpy188III	TCNNGA	2 cut(s)	205, 760
HpyCH4III	ACNGT	3 cut(s)	84, 130, 351
HpyCH4IV	ACGT	1 cut(s)	771
HpyCH4V	TGCA	7 cut(s)	125, 185, 248, 365, 461, 597, 662
HpyF10VI	GCNNNNNNNGC	1 cut(s)	611
HpyF3I	CTNAG	3 cut(s)	162, 730, 743
HpySE526I	ACGT	1 cut(s)	771
Hsp92II	CATG	5 cut(s)	122, 311, 338, 580, 686
Kzo9I	GATC	1 cut(s)	199
LmnI	GCTCC	1 cut(s)	619
LpnPI	CCDG	8 cut(s)	175, 202, 240, 342, 496, 581, 766, 773
Lsp1109I	GCAGC	1 cut(s)	646
LweI	GCATC	2 cut(s)	98, 112
MaeI	CTAG	1 cut(s)	392
MaeII	ACGT	1 cut(s)	771
MaeIII	GTNAC	2 cut(s)	69, 345
MalI	GATC	1 cut(s)	201
MboI	GATC	1 cut(s)	199
MboII	GAAGA	4 cut(s)	44, 47, 222, 243
MfeI	CAATTG	2 cut(s)	621, 663
MflI	RGATCY	1 cut(s)	199
MhlI	GDGCHC	1 cut(s)	789
MluCI	AATT	6 cut(s)	277, 324, 405, 621, 663, 708
MseI	TTAA	1 cut(s)	707
MspR9I	CCNGG	1 cut(s)	190
MunI	CAATTG	2 cut(s)	621, 663
Mva1269I	GAATGC	1 cut(s)	651
MvaI	CCWGG	1 cut(s)	190
MvnI	CGCG	1 cut(s)	605
MwoI	GCNNNNNNNGC	1 cut(s)	611
NdeI	CATATG	1 cut(s)	496
NdeII	GATC	1 cut(s)	199
NlaIII	CATG	5 cut(s)	122, 311, 338, 580, 686
NlaIV	GGNNCC	3 cut(s)	11, 442, 515
NmuCI	GTSAC	1 cut(s)	69
NspI	RCATGY	2 cut(s)	338, 580
NspV	TTCGAA	1 cut(s)	59
PciI	ACATGT	1 cut(s)	576
PctI	GAATGC	1 cut(s)	651
PfeI	GAWTC	4 cut(s)	4, 76, 158, 239
PflMI	CCANNNNNTGG	1 cut(s)	688
PkrI	GCNGC	2 cut(s)	607, 661
Ppu21I	YACGTR	1 cut(s)	772
PscI	ACATGT	1 cut(s)	576
Psp6I	CCWGG	1 cut(s)	188
PspGI	CCWGG	1 cut(s)	188
PspN4I	GGNNCC	3 cut(s)	11, 442, 515
PspPI	GGNCC	1 cut(s)	513
PsuI	RGATCY	1 cut(s)	199
RsaI	GTAC	3 cut(s)	333, 509, 756
RsaNI	GTAC	3 cut(s)	332, 508, 755
SaqAI	TTAA	1 cut(s)	707
SatI	GCNGC	2 cut(s)	606, 660
Sau3AI	GATC	1 cut(s)	199
Sau96I	GGNCC	1 cut(s)	513
ScrFI	CCNGG	1 cut(s)	190
SduI	GDGCHC	1 cut(s)	789
SfaNI	GCATC	2 cut(s)	98, 112
SfcI	CTRYAG	1 cut(s)	609
SfuI	TTCGAA	1 cut(s)	59
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
Sse9I	AATT	6 cut(s)	277, 324, 405, 621, 663, 708
SsiI	CCGC	2 cut(s)	605, 686
SspI	AATATT	1 cut(s)	450
SspMI	CTAG	1 cut(s)	392
StyD4I	CCNGG	1 cut(s)	188
TaaI	ACNGT	3 cut(s)	84, 130, 351
TaiI	ACGT	1 cut(s)	774
TaqI	TCGA	2 cut(s)	42, 59
TasI	AATT	6 cut(s)	277, 324, 405, 621, 663, 708
TatI	WGTACW	1 cut(s)	331
TauI	GCSGC	1 cut(s)	608
TfiI	GAWTC	4 cut(s)	4, 76, 158, 239
Tru1I	TTAA	1 cut(s)	707
Tru9I	TTAA	1 cut(s)	707
TscAI	CASTG	1 cut(s)	648
TseFI	GTSAC	1 cut(s)	69
TseI	GCWGC	1 cut(s)	659
Tsp45I	GTSAC	1 cut(s)	69
TspDTI	ATGAA	2 cut(s)	17, 336
TspGWI	ACGGA	1 cut(s)	88
TspRI	CASTG	1 cut(s)	648
Van91I	CCANNNNNTGG	1 cut(s)	688
XapI	RAATTY	1 cut(s)	324
XceI	RCATGY	2 cut(s)	338, 580
XspI	CTAG	1 cut(s)	392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.