Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003109

Physical Location & Seq

Genomic Coordinates Reverse (-)

23142113 .. 23143764

Gene Structure 1652 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g29930.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGTACAGTCAAAGAAGTTCAGAGGTGTCAGGCAACGCCACTGGGGCTCCTGGGTTTCTGAGATTCGTCATCCCTTACTGAAAAGGAGGGTGTGGCTTGGGACATTTGAGAGTGCAGAAGAGGCAGCACGAGCCTACGACGAGGCTGCGATTCTGATGAGCGGTCGAAATGCCAAAACAAACTTTCCAGTCACTACCAGTGAAATTGCTGCTTCTAATAAGGATCCTGCTATCAACAACAACAGCAACTCCAGTAGCTCTACTTCTAATTCACTTTCTGCGATCCTCAGCGCCAAGCTTCGCAAGTGTTGCAAGTCTCCCTCTCCTTCCCTCACTTGCCTCAGGCTCGACACAGAGAATTCCCACATCGGCGTTTGGCAAAAACGCGCCGGGCCACGTTCAGATTCAAATTGGTTGATGATGGTGGAGCTGGGACAGAAGACTGCAGGTTTAAAAGGGGAGAAGGAGGAGAGTACTAGTACTAGCGCCCCTGAAGTGTCCGATGGCCAGGAAATGGAAGGATTATTAGACAGTGGGTATGACAGACTACTCGAAGAGGAAAAGATTGCATTGCAGATGATAGAGGAACTTCTCAATAGAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010143 GO:0010166 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043170 GO:0043565 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901568 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

202

Amino Acids

22.3

Weight (kDa)

7.72

Isoelectric Point (pI)

65.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	6 - 53	3.2e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15360 AT1G15360
fragaria_vesca	FvH4_1g03190 FvH4_6g29930
malus_domestica	MD02G1030900.v1.1 MD15G1172600.v1.1 MD17G1209000.v1.1
prunus_persica	Prupe.3G084600_v2.0.a1 Prupe.7G243600_v2.0.a1
pyrus_communis	pycom15g15430
rosa_chinensis	RchiOBHm_Chr2g0088321 RchiOBHm_Chr2g0135921 RchiOBHm_Chr7g0230931
rosa_laevigata	RLG00000015943 RLG00000019490
rosa_multiflora	Rmu_sc0000483.1_g000022 Rmu_sc0004235.1_g000029 Rmu_sc0004243.1_g000002
rosa_roxburghii	Rroxscaffold_2G00108770 Rroxscaffold_2G00152750 Rroxscaffold_3G00229670
rosa_rugosa	Rorug01G0482900 Rorug02G0326900 Rorug07G0263300 Rorug07G0263400
rosa_samantha	Rh2AG378500 Rh2BG037200 Rh2BG385100 Rh2CG038300 Rh2CG364200 Rh2DG401400 Rh7AG416500 Rh7CG435700 Rh7DG410800
rosa_wichuraiana	Rw2G003000 Rw2G030840 Rw7G034490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	437
AccB7I	CCANNNNNTGG	1 cut(s)	514
AccBSI	CCGCTC	1 cut(s)	162
AccII	CGCG	1 cut(s)	387
AciI	CCGC	1 cut(s)	162
AclWI	GGATC	3 cut(s)	218, 231, 277
AcoI	YGGCCR	1 cut(s)	505
AcsI	RAATTY	1 cut(s)	358
AcuI	CTGAAG	1 cut(s)	513
AfaI	GTAC	3 cut(s)	6, 475, 481
AfiI	CCNNNNNNNGG	1 cut(s)	514
AgsI	TTSAA	1 cut(s)	408
AhlI	ACTAGT	1 cut(s)	476
AjnI	CCWGG	2 cut(s)	50, 507
AluBI	AGCT	3 cut(s)	258, 298, 430
AluI	AGCT	3 cut(s)	258, 298, 430
Alw26I	GTCTC	1 cut(s)	321
AlwI	GGATC	3 cut(s)	218, 231, 277
AoxI	GGCC	2 cut(s)	392, 505
ApeKI	GCWGC	3 cut(s)	125, 146, 209
ApoI	RAATTY	1 cut(s)	358
AspLEI	GCGC	3 cut(s)	293, 389, 488
AspS9I	GGNCC	1 cut(s)	392
AsuC2I	CCSGG	1 cut(s)	391
AxyI	CCTNAGG	1 cut(s)	341
BalI	TGGCCA	1 cut(s)	507
BamHI	GGATCC	1 cut(s)	223
BanII	GRGCYC	1 cut(s)	50
BarI	GAAGNNNNNNTAC	2 cut(s)	247, 279
BauI	CACGAG	1 cut(s)	129
BbsI	GAAGAC	1 cut(s)	446
BbvCI	CCTCAGC	1 cut(s)	287
BbvI	GCAGC	3 cut(s)	133, 137, 196
BccI	CCATC	2 cut(s)	415, 497
BcgI	CGANNNNNNTGC	2 cut(s)	128, 162
BciT130I	CCWGG	2 cut(s)	52, 509
BcnI	CCSGG	1 cut(s)	391
BcoDI	GTCTC	1 cut(s)	321
BcuI	ACTAGT	1 cut(s)	476
BfaI	CTAG	2 cut(s)	477, 483
BfmI	CTRYAG	1 cut(s)	444
BfoI	RGCGCY	2 cut(s)	294, 489
BfuAI	ACCTGC	1 cut(s)	437
BglI	GCCNNNNNGGC	1 cut(s)	45
BisI	GCNGC	3 cut(s)	126, 147, 210
BlsI	GCNGC	3 cut(s)	127, 148, 211
BmcAI	AGTACT	2 cut(s)	475, 481
Bme1390I	CCNGG	3 cut(s)	52, 391, 509
BmgT120I	GGNCC	1 cut(s)	392
BmiI	GGNNCC	2 cut(s)	49, 225
BmrFI	CCNGG	3 cut(s)	52, 391, 509
BmrI	ACTGGG	1 cut(s)	52
BmuI	ACTGGG	1 cut(s)	52
BpiI	GAAGAC	1 cut(s)	446
BpmI	CTGGAG	1 cut(s)	235
Bpu10I	CCTNAGC	1 cut(s)	287
BpuMI	CCSGG	1 cut(s)	391
BsaJI	CCNNGG	1 cut(s)	51
BsaXI	ACNNNNNCTCC	4 cut(s)	32, 62, 233, 263
Bsc4I	CCNNNNNNNGG	1 cut(s)	514
Bse1I	ACTGG	4 cut(s)	47, 188, 198, 252
Bse21I	CCTNAGG	1 cut(s)	341
Bse3DI	GCAATG	1 cut(s)	569
BseBI	CCWGG	2 cut(s)	52, 509
BseDI	CCNNGG	1 cut(s)	51
BseGI	GGATG	1 cut(s)	70
BseLI	CCNNNNNNNGG	1 cut(s)	514
BseMI	GCAATG	1 cut(s)	569
BseMII	CTCAG	3 cut(s)	51, 301, 355
BseNI	ACTGG	4 cut(s)	47, 188, 198, 252
BseRI	GAGGAG	1 cut(s)	482
BseXI	GCAGC	3 cut(s)	133, 137, 196
BseYI	CCCAGC	1 cut(s)	430
BsgI	GTGCAG	1 cut(s)	135
Bsh1236I	CGCG	1 cut(s)	387
Bsh1285I	CGRYCG	1 cut(s)	166
BshFI	GGCC	2 cut(s)	394, 507
BsiEI	CGRYCG	1 cut(s)	166
BsiSI	CCGG	1 cut(s)	390
BslFI	GGGAC	2 cut(s)	115, 447
BslI	CCNNNNNNNGG	1 cut(s)	514
BsmAI	GTCTC	1 cut(s)	321
BsmFI	GGGAC	2 cut(s)	115, 447
BsnI	GGCC	2 cut(s)	394, 507
Bsp1286I	GDGCHC	1 cut(s)	50
Bsp143I	GATC	2 cut(s)	223, 282
BspACI	CCGC	1 cut(s)	162
BspANI	GGCC	2 cut(s)	394, 507
BspCNI	CTCAG	3 cut(s)	52, 300, 354
BspFNI	CGCG	1 cut(s)	387
BspLI	GGNNCC	2 cut(s)	49, 225
BspMAI	CTGCAG	1 cut(s)	448
BspMI	ACCTGC	1 cut(s)	437
BspPI	GGATC	3 cut(s)	218, 231, 277
BsrBI	CCGCTC	1 cut(s)	162
BsrDI	GCAATG	1 cut(s)	569
BsrI	ACTGG	4 cut(s)	47, 188, 198, 252
BssECI	CCNNGG	1 cut(s)	51
BssMI	GATC	2 cut(s)	223, 282
BssSI	CACGAG	1 cut(s)	129
Bst2BI	CACGAG	1 cut(s)	129
Bst2UI	CCWGG	2 cut(s)	52, 509
Bst4CI	ACNGT	2 cut(s)	9, 533
Bst6I	CTCTTC	2 cut(s)	114, 549
BstAPI	GCANNNNNTGC	1 cut(s)	309
BstDEI	CTNAG	3 cut(s)	60, 287, 341
BstF5I	GGATG	1 cut(s)	70
BstFNI	CGCG	1 cut(s)	387
BstH2I	RGCGCY	2 cut(s)	294, 489
BstHHI	GCGC	3 cut(s)	293, 389, 488
BstKTI	GATC	2 cut(s)	226, 285
BstMAI	GTCTC	1 cut(s)	321
BstMBI	GATC	2 cut(s)	223, 282
BstMCI	CGRYCG	1 cut(s)	166
BstMWI	GCNNNNNNNGC	4 cut(s)	45, 122, 131, 309
BstNI	CCWGG	2 cut(s)	52, 509
BstSCI	CCNGG	3 cut(s)	50, 389, 507
BstSFI	CTRYAG	1 cut(s)	444
BstUI	CGCG	1 cut(s)	387
BstV1I	GCAGC	3 cut(s)	133, 137, 196
BstV2I	GAAGAC	1 cut(s)	446
BstX2I	RGATCY	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	223
Bsu36I	CCTNAGG	1 cut(s)	341
BsuRI	GGCC	2 cut(s)	394, 507
BtsCI	GGATG	1 cut(s)	70
BtsIMutI	CAGTG	3 cut(s)	40, 205, 538
BveI	ACCTGC	1 cut(s)	437
CfoI	GCGC	3 cut(s)	293, 389, 488
Cfr13I	GGNCC	1 cut(s)	392
Csp6I	GTAC	3 cut(s)	5, 474, 480
CviQI	GTAC	3 cut(s)	5, 474, 480
DdeI	CTNAG	3 cut(s)	60, 287, 341
DpnI	GATC	2 cut(s)	225, 284
DpnII	GATC	2 cut(s)	223, 282
DraI	TTTAAA	1 cut(s)	453
EaeI	YGGCCR	1 cut(s)	505
Eam1104I	CTCTTC	2 cut(s)	114, 549
EarI	CTCTTC	2 cut(s)	114, 549
Eco24I	GRGCYC	1 cut(s)	50
Eco57I	CTGAAG	1 cut(s)	513
Eco81I	CCTNAGG	1 cut(s)	341
EcoRI	GAATTC	1 cut(s)	358
EcoRII	CCWGG	2 cut(s)	50, 507
EcoT38I	GRGCYC	1 cut(s)	50
FaiI	YATR	1 cut(s)	540
FaqI	GGGAC	2 cut(s)	115, 447
Fnu4HI	GCNGC	3 cut(s)	126, 147, 210
FokI	GGATG	1 cut(s)	57
FriOI	GRGCYC	1 cut(s)	50
Fsp4HI	GCNGC	3 cut(s)	126, 147, 210
FspBI	CTAG	2 cut(s)	477, 483
GlaI	GCGC	3 cut(s)	292, 388, 487
GluI	GCNGC	3 cut(s)	126, 147, 210
GsaI	CCCAGC	1 cut(s)	434
GsuI	CTGGAG	1 cut(s)	235
HaeII	RGCGCY	2 cut(s)	294, 489
HaeIII	GGCC	2 cut(s)	394, 507
HapII	CCGG	1 cut(s)	390
HhaI	GCGC	3 cut(s)	293, 389, 488
Hin6I	GCGC	3 cut(s)	291, 387, 486
HinP1I	GCGC	3 cut(s)	291, 387, 486
HindIII	AAGCTT	1 cut(s)	296
HinfI	GANTC	3 cut(s)	64, 151, 404
HpaII	CCGG	1 cut(s)	390
Hpy188I	TCNGA	5 cut(s)	23, 61, 156, 403, 502
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	3 cut(s)	336, 457, 512
HpyCH4III	ACNGT	2 cut(s)	9, 533
HpyCH4IV	ACGT	1 cut(s)	397
HpyCH4V	TGCA	5 cut(s)	116, 312, 446, 569, 574
HpyF10VI	GCNNNNNNNGC	4 cut(s)	45, 122, 131, 309
HpyF3I	CTNAG	3 cut(s)	60, 287, 341
HpySE526I	ACGT	1 cut(s)	397
HspAI	GCGC	3 cut(s)	291, 387, 486
Kzo9I	GATC	2 cut(s)	223, 282
LmnI	GCTCC	2 cut(s)	53, 427
Lsp1109I	GCAGC	3 cut(s)	133, 137, 196
MaeI	CTAG	2 cut(s)	477, 483
MaeII	ACGT	1 cut(s)	397
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	2 cut(s)	225, 284
MbiI	CCGCTC	1 cut(s)	162
MboI	GATC	2 cut(s)	223, 282
MboII	GAAGA	3 cut(s)	131, 451, 566
MflI	RGATCY	1 cut(s)	223
MhlI	GDGCHC	1 cut(s)	50
MlsI	TGGCCA	1 cut(s)	507
MluCI	AATT	4 cut(s)	204, 268, 358, 409
MluNI	TGGCCA	1 cut(s)	507
Mox20I	TGGCCA	1 cut(s)	507
MscI	TGGCCA	1 cut(s)	507
MseI	TTAA	1 cut(s)	452
Msp20I	TGGCCA	1 cut(s)	507
MspI	CCGG	1 cut(s)	390
MspR9I	CCNGG	3 cut(s)	52, 391, 509
MvaI	CCWGG	2 cut(s)	52, 509
MvnI	CGCG	1 cut(s)	387
MwoI	GCNNNNNNNGC	4 cut(s)	45, 122, 131, 309
NciI	CCSGG	1 cut(s)	391
NdeII	GATC	2 cut(s)	223, 282
NlaIV	GGNNCC	2 cut(s)	49, 225
NmuCI	GTSAC	1 cut(s)	190
PfeI	GAWTC	3 cut(s)	64, 151, 404
PflMI	CCANNNNNTGG	1 cut(s)	514
PkrI	GCNGC	3 cut(s)	127, 148, 211
Psp6I	CCWGG	2 cut(s)	50, 507
PspFI	CCCAGC	1 cut(s)	430
PspGI	CCWGG	2 cut(s)	50, 507
PspN4I	GGNNCC	2 cut(s)	49, 225
PspPI	GGNCC	1 cut(s)	392
PstI	CTGCAG	1 cut(s)	448
PsuI	RGATCY	1 cut(s)	223
RsaI	GTAC	3 cut(s)	6, 475, 481
RsaNI	GTAC	3 cut(s)	5, 474, 480
SaqAI	TTAA	1 cut(s)	452
SatI	GCNGC	3 cut(s)	126, 147, 210
Sau3AI	GATC	2 cut(s)	223, 282
Sau96I	GGNCC	1 cut(s)	392
ScaI	AGTACT	2 cut(s)	475, 481
ScrFI	CCNGG	3 cut(s)	52, 391, 509
SduI	GDGCHC	1 cut(s)	50
SetI	ASST	6 cut(s)	28, 260, 300, 400, 432, 451
SfcI	CTRYAG	1 cut(s)	444
SpeI	ACTAGT	1 cut(s)	476
Sse9I	AATT	4 cut(s)	204, 268, 358, 409
SsiI	CCGC	1 cut(s)	162
SspMI	CTAG	2 cut(s)	477, 483
StyD4I	CCNGG	3 cut(s)	50, 389, 507
TaaI	ACNGT	2 cut(s)	9, 533
TaiI	ACGT	1 cut(s)	400
TaqI	TCGA	3 cut(s)	166, 348, 552
TasI	AATT	4 cut(s)	204, 268, 358, 409
TatI	WGTACW	2 cut(s)	473, 479
TfiI	GAWTC	3 cut(s)	64, 151, 404
Tru1I	TTAA	1 cut(s)	452
Tru9I	TTAA	1 cut(s)	452
TscAI	CASTG	3 cut(s)	47, 205, 538
TseFI	GTSAC	1 cut(s)	190
TseI	GCWGC	3 cut(s)	125, 146, 209
Tsp45I	GTSAC	1 cut(s)	190
TspRI	CASTG	3 cut(s)	47, 205, 538
Van91I	CCANNNNNTGG	1 cut(s)	514
XapI	RAATTY	1 cut(s)	358
XspI	CTAG	2 cut(s)	477, 483
ZrmI	AGTACT	2 cut(s)	475, 481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.