Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003109

Physical Location & Seq

Genomic Coordinates Forward (+)

89596839 .. 89598055

Gene Structure 1217 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00152750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGTGCATGCTTAGAATCCATCTCCTAGCTCTCTATCTCTTTCAAATTGGAAAAATGGTGCAGTCAACAAGGAAGTTTAGAGGTGTCCGGCAGCGGAATTGGGGCTCTTGGGTCTCTGAAATTCGTCATCCACTGCTGAAGAGAAGGGTGTGGCTAGGCACATTTGACAGTGCTGAAGAGGCGGCACGAGCATATGATGCAGCTGCCATTTTGATGAGTGGCCGAAATGCGAAAACAAATTTCCCAACAACTACTCAAACTAGTAGTAGTACTACTCAGAAAACTAGTACTTCTAAGGATTCTTCGTCAACACCAAATGATTTATCAGATATCTTACGCGCAAAGCTGAGGAAATGTAGCAACGTACTCTCTCCATCCCTGACGTGCTTGAGGCTGGACAACGAGAGCTCTCATATTGGAGTCTGGCAAAAGCGAGCAGGTCAACGATCGGATCATTCCAACTGGGTCATGACTGTCCAACTTGGAAAGAAGAATATTAAAGCTGATGATGGTACCACCAACCAGCAAAGTGTTTCATCACCATCAATGTTTTCAGAGTCCCCAGCATCATCATCATTAGAAAAGCCTAAACTAATAGCAGATGCTTATGAAATGACTGAAGAGGAGAGAATTTCATTGCAGATGATAGAGGAGCTGCTTAACAGAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

223

Amino Acids

25.09

Weight (kDa)

9.67

Isoelectric Point (pI)

65.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	25 - 72	1e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15360 AT1G15360
fragaria_vesca	FvH4_1g03190 FvH4_6g29930
malus_domestica	MD02G1030900.v1.1 MD15G1172600.v1.1 MD17G1209000.v1.1
prunus_persica	Prupe.3G084600_v2.0.a1 Prupe.7G243600_v2.0.a1
pyrus_communis	pycom15g15430
rosa_chinensis	RchiOBHm_Chr2g0088321 RchiOBHm_Chr2g0135921 RchiOBHm_Chr7g0230931
rosa_laevigata	RLG00000015943 RLG00000019490
rosa_multiflora	Rmu_sc0000483.1_g000022 Rmu_sc0004235.1_g000029 Rmu_sc0004243.1_g000002
rosa_roxburghii	Rroxscaffold_2G00108770 Rroxscaffold_2G00152750 Rroxscaffold_3G00229670
rosa_rugosa	Rorug01G0482900 Rorug02G0326900 Rorug07G0263300 Rorug07G0263400
rosa_samantha	Rh2AG378500 Rh2BG037200 Rh2BG385100 Rh2CG038300 Rh2CG364200 Rh2DG401400 Rh7AG416500 Rh7CG435700 Rh7DG410800
rosa_wichuraiana	Rw2G003000 Rw2G030840 Rw7G034490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	428
Acc65I	GGTACC	1 cut(s)	512
AccB1I	GGYRCC	1 cut(s)	512
AccII	CGCG	1 cut(s)	339
AciI	CCGC	2 cut(s)	94, 182
AclWI	GGATC	1 cut(s)	459
AcoI	YGGCCR	1 cut(s)	220
AcsI	RAATTY	3 cut(s)	120, 238, 630
AcuI	CTGAAG	3 cut(s)	158, 195, 639
AfaI	GTAC	4 cut(s)	271, 289, 366, 514
AgsI	TTSAA	1 cut(s)	44
AhlI	ACTAGT	2 cut(s)	260, 284
AjiI	CACGTC	1 cut(s)	384
AluBI	AGCT	6 cut(s)	29, 203, 346, 408, 503, 655
AluI	AGCT	6 cut(s)	29, 203, 346, 408, 503, 655
Alw21I	GWGCWC	1 cut(s)	410
Alw26I	GTCTC	1 cut(s)	118
AlwI	GGATC	1 cut(s)	459
AoxI	GGCC	1 cut(s)	220
ApeKI	GCWGC	4 cut(s)	91, 200, 203, 655
ApoI	RAATTY	3 cut(s)	120, 238, 630
Asp718I	GGTACC	1 cut(s)	512
AspLEI	GCGC	1 cut(s)	341
AsuHPI	GGTGA	1 cut(s)	531
BanI	GGYRCC	1 cut(s)	512
BanII	GRGCYC	2 cut(s)	107, 410
BauI	CACGAG	1 cut(s)	186
Bbv12I	GWGCWC	1 cut(s)	410
BbvCI	CCTCAGC	1 cut(s)	347
BbvI	GCAGC	4 cut(s)	103, 190, 212, 642
BccI	CCATC	4 cut(s)	27, 382, 503, 550
BcoDI	GTCTC	1 cut(s)	118
BcuI	ACTAGT	2 cut(s)	260, 284
BfaI	CTAG	4 cut(s)	26, 155, 261, 285
BfuAI	ACCTGC	1 cut(s)	428
BisI	GCNGC	5 cut(s)	92, 183, 201, 204, 656
BlsI	GCNGC	5 cut(s)	93, 184, 202, 205, 657
BmcAI	AGTACT	2 cut(s)	271, 289
BmgBI	CACGTC	1 cut(s)	384
BmiI	GGNNCC	1 cut(s)	514
BmrI	ACTGGG	1 cut(s)	472
BmsI	GCATC	3 cut(s)	187, 575, 592
BmuI	ACTGGG	1 cut(s)	472
Bpu10I	CCTNAGC	1 cut(s)	347
BpuEI	CTTGAG	1 cut(s)	409
BsaI	GGTCTC	1 cut(s)	118
Bse1I	ACTGG	1 cut(s)	467
Bse3DI	GCAATG	1 cut(s)	635
BseGI	GGATG	2 cut(s)	127, 374
BseMI	GCAATG	1 cut(s)	635
BseMII	CTCAG	2 cut(s)	290, 338
BseNI	ACTGG	1 cut(s)	467
BseRI	GAGGAG	2 cut(s)	638, 665
BseXI	GCAGC	4 cut(s)	103, 190, 212, 642
BseYI	CCCAGC	1 cut(s)	562
BsgI	GTGCAG	1 cut(s)	80
Bsh1236I	CGCG	1 cut(s)	339
Bsh1285I	CGRYCG	1 cut(s)	449
BshFI	GGCC	1 cut(s)	222
BshNI	GGYRCC	1 cut(s)	512
BsiEI	CGRYCG	1 cut(s)	449
BsiHKAI	GWGCWC	1 cut(s)	410
BsiSI	CCGG	1 cut(s)	88
BslFI	GGGAC	1 cut(s)	544
BsmAI	GTCTC	1 cut(s)	118
BsmFI	GGGAC	1 cut(s)	544
BsnI	GGCC	1 cut(s)	222
Bso31I	GGTCTC	1 cut(s)	118
Bsp1286I	GDGCHC	2 cut(s)	107, 410
Bsp143I	GATC	2 cut(s)	446, 451
BspACI	CCGC	2 cut(s)	94, 182
BspANI	GGCC	1 cut(s)	222
BspCNI	CTCAG	2 cut(s)	289, 339
BspFNI	CGCG	1 cut(s)	339
BspHI	TCATGA	1 cut(s)	468
BspLI	GGNNCC	1 cut(s)	514
BspMI	ACCTGC	1 cut(s)	428
BspPI	GGATC	1 cut(s)	459
BspT107I	GGYRCC	1 cut(s)	512
BspTNI	GGTCTC	1 cut(s)	118
BsrDI	GCAATG	1 cut(s)	635
BsrI	ACTGG	1 cut(s)	467
BssMI	GATC	2 cut(s)	446, 451
BssSI	CACGAG	1 cut(s)	186
Bst2BI	CACGAG	1 cut(s)	186
Bst4CI	ACNGT	2 cut(s)	170, 475
Bst6I	CTCTTC	3 cut(s)	134, 171, 615
BstAPI	GCANNNNNTGC	1 cut(s)	197
BstC8I	GCNNGC	2 cut(s)	8, 435
BstDEI	CTNAG	4 cut(s)	11, 276, 294, 347
BstF5I	GGATG	2 cut(s)	127, 374
BstFNI	CGCG	1 cut(s)	339
BstHHI	GCGC	1 cut(s)	341
BstKTI	GATC	2 cut(s)	449, 454
BstMAI	GTCTC	1 cut(s)	118
BstMBI	GATC	2 cut(s)	446, 451
BstMCI	CGRYCG	1 cut(s)	449
BstMWI	GCNNNNNNNGC	3 cut(s)	179, 188, 197
BstNSI	RCATGY	1 cut(s)	10
BstUI	CGCG	1 cut(s)	339
BstV1I	GCAGC	4 cut(s)	103, 190, 212, 642
BsuRI	GGCC	1 cut(s)	222
BtrI	CACGTC	1 cut(s)	384
BtsCI	GGATG	2 cut(s)	127, 374
BtsI	GCAGTG	1 cut(s)	131
BtsIMutI	CAGTG	2 cut(s)	131, 175
BveI	ACCTGC	1 cut(s)	428
Cac8I	GCNNGC	2 cut(s)	8, 435
CciI	TCATGA	1 cut(s)	468
CfoI	GCGC	1 cut(s)	341
Csp6I	GTAC	4 cut(s)	270, 288, 365, 513
CviAII	CATG	2 cut(s)	7, 469
CviQI	GTAC	4 cut(s)	270, 288, 365, 513
DdeI	CTNAG	4 cut(s)	11, 276, 294, 347
DpnI	GATC	2 cut(s)	448, 453
DpnII	GATC	2 cut(s)	446, 451
EaeI	YGGCCR	1 cut(s)	220
Eam1104I	CTCTTC	3 cut(s)	134, 171, 615
EarI	CTCTTC	3 cut(s)	134, 171, 615
Ecl136II	GAGCTC	1 cut(s)	408
Eco24I	GRGCYC	2 cut(s)	107, 410
Eco31I	GGTCTC	1 cut(s)	118
Eco32I	GATATC	1 cut(s)	331
Eco53kI	GAGCTC	1 cut(s)	408
Eco57I	CTGAAG	3 cut(s)	158, 195, 639
EcoICRI	GAGCTC	1 cut(s)	408
EcoRV	GATATC	1 cut(s)	331
EcoT38I	GRGCYC	2 cut(s)	107, 410
FaeI	CATG	2 cut(s)	10, 472
FaiI	YATR	6 cut(s)	8, 193, 195, 414, 470, 609
FaqI	GGGAC	1 cut(s)	544
FatI	CATG	2 cut(s)	6, 468
FauNDI	CATATG	1 cut(s)	193
Fnu4HI	GCNGC	5 cut(s)	92, 183, 201, 204, 656
FokI	GGATG	2 cut(s)	114, 361
FriOI	GRGCYC	2 cut(s)	107, 410
Fsp4HI	GCNGC	5 cut(s)	92, 183, 201, 204, 656
FspBI	CTAG	4 cut(s)	26, 155, 261, 285
GlaI	GCGC	1 cut(s)	340
GluI	GCNGC	5 cut(s)	92, 183, 201, 204, 656
GsaI	CCCAGC	1 cut(s)	566
HaeIII	GGCC	1 cut(s)	222
HapII	CCGG	1 cut(s)	88
HhaI	GCGC	1 cut(s)	341
Hin1II	CATG	2 cut(s)	10, 472
Hin6I	GCGC	1 cut(s)	339
HinP1I	GCGC	1 cut(s)	339
HincII	GTYRAC	3 cut(s)	66, 309, 443
HindII	GTYRAC	3 cut(s)	66, 309, 443
HinfI	GANTC	4 cut(s)	15, 299, 420, 557
HpaII	CCGG	1 cut(s)	88
HphI	GGTGA	1 cut(s)	531
Hpy166II	GTNNAC	3 cut(s)	66, 309, 443
Hpy188I	TCNGA	5 cut(s)	118, 279, 328, 451, 556
Hpy188III	TCNNGA	1 cut(s)	469
Hpy8I	GTNNAC	3 cut(s)	66, 309, 443
HpyAV	CCTTC	1 cut(s)	138
HpyCH4III	ACNGT	2 cut(s)	170, 475
HpyCH4IV	ACGT	2 cut(s)	363, 383
HpyCH4V	TGCA	4 cut(s)	6, 61, 200, 640
HpyF10VI	GCNNNNNNNGC	3 cut(s)	179, 188, 197
HpyF3I	CTNAG	4 cut(s)	11, 276, 294, 347
HpySE526I	ACGT	2 cut(s)	363, 383
Hsp92II	CATG	2 cut(s)	10, 472
HspAI	GCGC	1 cut(s)	339
KpnI	GGTACC	1 cut(s)	516
Kzo9I	GATC	2 cut(s)	446, 451
LmnI	GCTCC	1 cut(s)	652
LpnPI	CCDG	8 cut(s)	101, 380, 392, 409, 423, 448, 536, 576
Lsp1109I	GCAGC	4 cut(s)	103, 190, 212, 642
LweI	GCATC	3 cut(s)	187, 575, 592
MaeI	CTAG	4 cut(s)	26, 155, 261, 285
MaeII	ACGT	2 cut(s)	363, 383
MalI	GATC	2 cut(s)	448, 453
MboI	GATC	2 cut(s)	446, 451
MboII	GAAGA	5 cut(s)	151, 188, 294, 502, 632
MhlI	GDGCHC	2 cut(s)	107, 410
MluCI	AATT	6 cut(s)	45, 97, 120, 238, 630, 667
MlyI	GAGTC	2 cut(s)	429, 566
MmeI	TCCRAC	2 cut(s)	483, 502
MnlI	CCTC	6 cut(s)	74, 172, 342, 384, 616, 643
MseI	TTAA	2 cut(s)	498, 660
MslI	CAYNNNNRTG	1 cut(s)	212
MspA1I	CMGCKG	2 cut(s)	94, 203
MspI	CCGG	1 cut(s)	88
MvnI	CGCG	1 cut(s)	339
MwoI	GCNNNNNNNGC	3 cut(s)	179, 188, 197
NdeI	CATATG	1 cut(s)	193
NdeII	GATC	2 cut(s)	446, 451
NlaIII	CATG	2 cut(s)	10, 472
NlaIV	GGNNCC	1 cut(s)	514
NspI	RCATGY	1 cut(s)	10
PaeI	GCATGC	1 cut(s)	10
PagI	TCATGA	1 cut(s)	468
PfeI	GAWTC	2 cut(s)	15, 299
PkrI	GCNGC	5 cut(s)	93, 184, 202, 205, 657
Ple19I	CGATCG	1 cut(s)	449
PleI	GAGTC	2 cut(s)	428, 565
PpsI	GAGTC	2 cut(s)	428, 565
Psp124BI	GAGCTC	1 cut(s)	410
PspFI	CCCAGC	1 cut(s)	562
PspN4I	GGNNCC	1 cut(s)	514
PvuI	CGATCG	1 cut(s)	449
PvuII	CAGCTG	1 cut(s)	203
RsaI	GTAC	4 cut(s)	271, 289, 366, 514
RsaNI	GTAC	4 cut(s)	270, 288, 365, 513
RseI	CAYNNNNRTG	1 cut(s)	212
SacI	GAGCTC	1 cut(s)	410
SaqAI	TTAA	2 cut(s)	498, 660
SatI	GCNGC	5 cut(s)	92, 183, 201, 204, 656
Sau3AI	GATC	2 cut(s)	446, 451
ScaI	AGTACT	2 cut(s)	271, 289
SchI	GAGTC	2 cut(s)	429, 566
SduI	GDGCHC	2 cut(s)	107, 410
SfaNI	GCATC	3 cut(s)	187, 575, 592
SmiMI	CAYNNNNRTG	1 cut(s)	212
SmlI	CTYRAG	1 cut(s)	388
SmoI	CTYRAG	1 cut(s)	388
SpeI	ACTAGT	2 cut(s)	260, 284
SphI	GCATGC	1 cut(s)	10
Sse9I	AATT	6 cut(s)	45, 97, 120, 238, 630, 667
SsiI	CCGC	2 cut(s)	94, 182
SspI	AATATT	1 cut(s)	496
SspMI	CTAG	4 cut(s)	26, 155, 261, 285
SstI	GAGCTC	1 cut(s)	410
TaaI	ACNGT	2 cut(s)	170, 475
TaiI	ACGT	2 cut(s)	366, 386
TasI	AATT	6 cut(s)	45, 97, 120, 238, 630, 667
TatI	WGTACW	2 cut(s)	269, 287
TauI	GCSGC	1 cut(s)	185
TfiI	GAWTC	2 cut(s)	15, 299
Tru1I	TTAA	2 cut(s)	498, 660
Tru9I	TTAA	2 cut(s)	498, 660
TscAI	CASTG	2 cut(s)	138, 175
TseI	GCWGC	4 cut(s)	91, 200, 203, 655
TspDTI	ATGAA	3 cut(s)	525, 624, 624
TspRI	CASTG	2 cut(s)	138, 175
XapI	RAATTY	3 cut(s)	120, 238, 630
XceI	RCATGY	1 cut(s)	10
XspI	CTAG	4 cut(s)	26, 155, 261, 285
ZrmI	AGTACT	2 cut(s)	271, 289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.