Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003109

Physical Location & Seq

Genomic Coordinates Forward (+)

56713668 .. 56714594

Gene Structure 927 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG378500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGTACAATCAAAGAAGTTCAGAGGTGTCAGGCAACGCCACTGGGGCTCCTGGGTTTCTGAGATTCGTCATCCATTACTGAAAAGGAGGGTGTGGCTTGGGACATTTGAGAGTGCAGAAGAGGCAGCACGAGCCTACGACGAGGCTGCGATTCTGATGAGCGGTCGAAATGCCAAAACAAACTTTCCAGTCACTACAAATGAAATTGCAGCTGCTAGTAAGGATCCTATCAACAAGAGCAACTCCAGTAGTCCTTCTTCACTTTCTGCAATCCTCAGCGCCAAGCTTCGCAAGTGTTGCAAGTCTCCCTCTCCTTCCCTCACTTGCCTCAGGCTCGACACTGAGAATTCTCATATTGGCGTTTGGCAAAAGCGTGCCGGGCCACGTTCAGATTCGAATTGGTTGATGATGGTGGAACTGGGACAGAAGAGTGATTTAAAAGAGGAGAAGGAGGAGAGTACTAGCGCCCCTGAATTGCCCGATGGACACGAAACGGAAGGAGTACACGGTGGGGGTGATAGATTGCACGAGGAGGAAAGGATTGCATTGCAGATGATAGAGGAACTTCTCAATAGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010143 GO:0010166 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043170 GO:0043565 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901568 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

193

Amino Acids

21.58

Weight (kDa)

7.77

Isoelectric Point (pI)

70.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	6 - 53	3e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15360 AT1G15360
fragaria_vesca	FvH4_1g03190 FvH4_6g29930
malus_domestica	MD02G1030900.v1.1 MD15G1172600.v1.1 MD17G1209000.v1.1
prunus_persica	Prupe.3G084600_v2.0.a1 Prupe.7G243600_v2.0.a1
pyrus_communis	pycom15g15430
rosa_chinensis	RchiOBHm_Chr2g0088321 RchiOBHm_Chr2g0135921 RchiOBHm_Chr7g0230931
rosa_laevigata	RLG00000015943 RLG00000019490
rosa_multiflora	Rmu_sc0000483.1_g000022 Rmu_sc0004235.1_g000029 Rmu_sc0004243.1_g000002
rosa_roxburghii	Rroxscaffold_2G00108770 Rroxscaffold_2G00152750 Rroxscaffold_3G00229670
rosa_rugosa	Rorug01G0482900 Rorug02G0326900 Rorug07G0263300 Rorug07G0263400
rosa_samantha	Rh2AG378500 Rh2BG037200 Rh2BG385100 Rh2CG038300 Rh2CG364200 Rh2DG401400 Rh7AG416500 Rh7CG435700 Rh7DG410800
rosa_wichuraiana	Rw2G003000 Rw2G030840 Rw7G034490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	162
AciI	CCGC	1 cut(s)	162
AclWI	GGATC	2 cut(s)	218, 231
AcsI	RAATTY	1 cut(s)	346
AfaI	GTAC	3 cut(s)	6, 460, 504
AjnI	CCWGG	1 cut(s)	50
AluBI	AGCT	2 cut(s)	212, 286
AluI	AGCT	2 cut(s)	212, 286
Alw26I	GTCTC	1 cut(s)	309
AlwI	GGATC	2 cut(s)	218, 231
AoxI	GGCC	1 cut(s)	380
ApeKI	GCWGC	4 cut(s)	125, 146, 209, 212
ApoI	RAATTY	1 cut(s)	346
AspLEI	GCGC	2 cut(s)	281, 467
AspS9I	GGNCC	1 cut(s)	380
AsuC2I	CCSGG	1 cut(s)	379
AsuHPI	GGTGA	1 cut(s)	527
AsuII	TTCGAA	1 cut(s)	395
AxyI	CCTNAGG	1 cut(s)	329
BamHI	GGATCC	1 cut(s)	223
BanII	GRGCYC	1 cut(s)	50
BarI	GAAGNNNNNNTAC	2 cut(s)	241, 273
BauI	CACGAG	2 cut(s)	129, 527
BbvCI	CCTCAGC	1 cut(s)	275
BbvI	GCAGC	4 cut(s)	133, 137, 199, 221
BccI	CCATC	2 cut(s)	403, 476
BcgI	CGANNNNNNTGC	2 cut(s)	128, 162
BciT130I	CCWGG	1 cut(s)	52
BcnI	CCSGG	1 cut(s)	379
BcoDI	GTCTC	1 cut(s)	309
BfaI	CTAG	2 cut(s)	216, 462
BfoI	RGCGCY	2 cut(s)	282, 468
BglI	GCCNNNNNGGC	1 cut(s)	45
BisI	GCNGC	4 cut(s)	126, 147, 210, 213
BlsI	GCNGC	4 cut(s)	127, 148, 211, 214
BmcAI	AGTACT	1 cut(s)	460
Bme1390I	CCNGG	2 cut(s)	52, 379
BmgT120I	GGNCC	1 cut(s)	380
BmiI	GGNNCC	2 cut(s)	49, 225
BmrFI	CCNGG	2 cut(s)	52, 379
BmrI	ACTGGG	2 cut(s)	52, 428
BmuI	ACTGGG	2 cut(s)	52, 428
BpmI	CTGGAG	1 cut(s)	229
Bpu10I	CCTNAGC	1 cut(s)	275
Bpu14I	TTCGAA	1 cut(s)	395
BpuMI	CCSGG	1 cut(s)	379
BsaJI	CCNNGG	1 cut(s)	51
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bse1I	ACTGG	4 cut(s)	47, 188, 246, 423
Bse21I	CCTNAGG	1 cut(s)	329
Bse3DI	GCAATG	1 cut(s)	545
BseBI	CCWGG	1 cut(s)	52
BseDI	CCNNGG	1 cut(s)	51
BseGI	GGATG	1 cut(s)	70
BseMI	GCAATG	1 cut(s)	545
BseMII	CTCAG	4 cut(s)	51, 289, 333, 343
BseNI	ACTGG	4 cut(s)	47, 188, 246, 423
BseRI	GAGGAG	3 cut(s)	458, 467, 545
BseXI	GCAGC	4 cut(s)	133, 137, 199, 221
BsgI	GTGCAG	1 cut(s)	135
Bsh1285I	CGRYCG	1 cut(s)	166
BshFI	GGCC	1 cut(s)	382
BsiEI	CGRYCG	1 cut(s)	166
BsiSI	CCGG	1 cut(s)	378
BslFI	GGGAC	2 cut(s)	115, 435
BsmAI	GTCTC	1 cut(s)	309
BsmFI	GGGAC	2 cut(s)	115, 435
BsnI	GGCC	1 cut(s)	382
Bsp119I	TTCGAA	1 cut(s)	395
Bsp1286I	GDGCHC	1 cut(s)	50
Bsp143I	GATC	1 cut(s)	223
BspACI	CCGC	1 cut(s)	162
BspANI	GGCC	1 cut(s)	382
BspCNI	CTCAG	4 cut(s)	52, 288, 334, 342
BspLI	GGNNCC	2 cut(s)	49, 225
BspPI	GGATC	2 cut(s)	218, 231
BspT104I	TTCGAA	1 cut(s)	395
BsrBI	CCGCTC	1 cut(s)	162
BsrDI	GCAATG	1 cut(s)	545
BsrI	ACTGG	4 cut(s)	47, 188, 246, 423
BssECI	CCNNGG	1 cut(s)	51
BssMI	GATC	1 cut(s)	223
BssSI	CACGAG	2 cut(s)	129, 527
Bst2BI	CACGAG	2 cut(s)	129, 527
Bst2UI	CCWGG	1 cut(s)	52
Bst4CI	ACNGT	1 cut(s)	509
Bst6I	CTCTTC	2 cut(s)	114, 422
BstAPI	GCANNNNNTGC	1 cut(s)	297
BstBI	TTCGAA	1 cut(s)	395
BstC8I	GCNNGC	1 cut(s)	375
BstDEI	CTNAG	4 cut(s)	60, 275, 329, 342
BstF5I	GGATG	1 cut(s)	70
BstH2I	RGCGCY	2 cut(s)	282, 468
BstHHI	GCGC	2 cut(s)	281, 467
BstKTI	GATC	1 cut(s)	226
BstMAI	GTCTC	1 cut(s)	309
BstMBI	GATC	1 cut(s)	223
BstMCI	CGRYCG	1 cut(s)	166
BstMWI	GCNNNNNNNGC	5 cut(s)	45, 122, 131, 297, 379
BstNI	CCWGG	1 cut(s)	52
BstSCI	CCNGG	2 cut(s)	50, 377
BstV1I	GCAGC	4 cut(s)	133, 137, 199, 221
BstX2I	RGATCY	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	223
Bsu36I	CCTNAGG	1 cut(s)	329
BsuRI	GGCC	1 cut(s)	382
BtsCI	GGATG	1 cut(s)	70
BtsIMutI	CAGTG	2 cut(s)	40, 339
Cac8I	GCNNGC	1 cut(s)	375
CfoI	GCGC	2 cut(s)	281, 467
Cfr13I	GGNCC	1 cut(s)	380
Csp6I	GTAC	3 cut(s)	5, 459, 503
CviJI	RGCY	8 cut(s)	48, 97, 134, 146, 212, 286, 334, 382
CviKI_1	RGCY	8 cut(s)	48, 97, 134, 146, 212, 286, 334, 382
CviQI	GTAC	3 cut(s)	5, 459, 503
DdeI	CTNAG	4 cut(s)	60, 275, 329, 342
DpnI	GATC	1 cut(s)	225
DpnII	GATC	1 cut(s)	223
DraI	TTTAAA	1 cut(s)	438
Eam1104I	CTCTTC	2 cut(s)	114, 422
EarI	CTCTTC	2 cut(s)	114, 422
Eco24I	GRGCYC	1 cut(s)	50
Eco81I	CCTNAGG	1 cut(s)	329
EcoRI	GAATTC	1 cut(s)	346
EcoRII	CCWGG	1 cut(s)	50
EcoT38I	GRGCYC	1 cut(s)	50
FaiI	YATR	1 cut(s)	354
FaqI	GGGAC	2 cut(s)	115, 435
Fnu4HI	GCNGC	4 cut(s)	126, 147, 210, 213
FokI	GGATG	1 cut(s)	57
FriOI	GRGCYC	1 cut(s)	50
Fsp4HI	GCNGC	4 cut(s)	126, 147, 210, 213
FspBI	CTAG	2 cut(s)	216, 462
GlaI	GCGC	2 cut(s)	280, 466
GluI	GCNGC	4 cut(s)	126, 147, 210, 213
GsuI	CTGGAG	1 cut(s)	229
HaeII	RGCGCY	2 cut(s)	282, 468
HaeIII	GGCC	1 cut(s)	382
HapII	CCGG	1 cut(s)	378
HhaI	GCGC	2 cut(s)	281, 467
Hin6I	GCGC	2 cut(s)	279, 465
HinP1I	GCGC	2 cut(s)	279, 465
HindIII	AAGCTT	1 cut(s)	284
HinfI	GANTC	3 cut(s)	64, 151, 392
HpaII	CCGG	1 cut(s)	378
HphI	GGTGA	1 cut(s)	527
Hpy166II	GTNNAC	1 cut(s)	505
Hpy188I	TCNGA	4 cut(s)	23, 61, 156, 391
Hpy8I	GTNNAC	1 cut(s)	505
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	4 cut(s)	264, 324, 442, 491
HpyCH4III	ACNGT	1 cut(s)	509
HpyCH4IV	ACGT	1 cut(s)	385
HpyCH4V	TGCA	7 cut(s)	116, 209, 269, 300, 526, 545, 550
HpyF10VI	GCNNNNNNNGC	5 cut(s)	45, 122, 131, 297, 379
HpyF3I	CTNAG	4 cut(s)	60, 275, 329, 342
HpySE526I	ACGT	1 cut(s)	385
HspAI	GCGC	2 cut(s)	279, 465
Kzo9I	GATC	1 cut(s)	223
LmnI	GCTCC	1 cut(s)	53
Lsp1109I	GCAGC	4 cut(s)	133, 137, 199, 221
MaeI	CTAG	2 cut(s)	216, 462
MaeII	ACGT	1 cut(s)	385
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	1 cut(s)	225
MbiI	CCGCTC	1 cut(s)	162
MboI	GATC	1 cut(s)	223
MboII	GAAGA	3 cut(s)	131, 249, 439
MflI	RGATCY	1 cut(s)	223
MhlI	GDGCHC	1 cut(s)	50
MluCI	AATT	5 cut(s)	204, 346, 397, 473, 577
MseI	TTAA	2 cut(s)	437, 580
MspA1I	CMGCKG	1 cut(s)	212
MspI	CCGG	1 cut(s)	378
MspR9I	CCNGG	2 cut(s)	52, 379
MvaI	CCWGG	1 cut(s)	52
MwoI	GCNNNNNNNGC	5 cut(s)	45, 122, 131, 297, 379
NciI	CCSGG	1 cut(s)	379
NdeII	GATC	1 cut(s)	223
NlaIV	GGNNCC	2 cut(s)	49, 225
NmuCI	GTSAC	1 cut(s)	190
NspV	TTCGAA	1 cut(s)	395
PfeI	GAWTC	3 cut(s)	64, 151, 392
PkrI	GCNGC	4 cut(s)	127, 148, 211, 214
Psp6I	CCWGG	1 cut(s)	50
PspGI	CCWGG	1 cut(s)	50
PspN4I	GGNNCC	2 cut(s)	49, 225
PspPI	GGNCC	1 cut(s)	380
PsuI	RGATCY	1 cut(s)	223
PvuII	CAGCTG	1 cut(s)	212
RsaI	GTAC	3 cut(s)	6, 460, 504
RsaNI	GTAC	3 cut(s)	5, 459, 503
SaqAI	TTAA	2 cut(s)	437, 580
SatI	GCNGC	4 cut(s)	126, 147, 210, 213
Sau3AI	GATC	1 cut(s)	223
Sau96I	GGNCC	1 cut(s)	380
ScaI	AGTACT	1 cut(s)	460
ScrFI	CCNGG	2 cut(s)	52, 379
SduI	GDGCHC	1 cut(s)	50
SetI	ASST	4 cut(s)	28, 214, 288, 388
SfuI	TTCGAA	1 cut(s)	395
Sse9I	AATT	5 cut(s)	204, 346, 397, 473, 577
SsiI	CCGC	1 cut(s)	162
SspMI	CTAG	2 cut(s)	216, 462
StyD4I	CCNGG	2 cut(s)	50, 377
TaaI	ACNGT	1 cut(s)	509
TaiI	ACGT	1 cut(s)	388
TaqI	TCGA	3 cut(s)	166, 336, 395
TasI	AATT	5 cut(s)	204, 346, 397, 473, 577
TatI	WGTACW	2 cut(s)	458, 502
TfiI	GAWTC	3 cut(s)	64, 151, 392
Tru1I	TTAA	2 cut(s)	437, 580
Tru9I	TTAA	2 cut(s)	437, 580
TscAI	CASTG	2 cut(s)	47, 346
TseFI	GTSAC	1 cut(s)	190
TseI	GCWGC	4 cut(s)	125, 146, 209, 212
Tsp45I	GTSAC	1 cut(s)	190
TspDTI	ATGAA	1 cut(s)	216
TspGWI	ACGGA	1 cut(s)	509
TspRI	CASTG	2 cut(s)	47, 346
XapI	RAATTY	1 cut(s)	346
XspI	CTAG	2 cut(s)	216, 462
ZrmI	AGTACT	1 cut(s)	460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.