Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0003109

Physical Location & Seq

Genomic Coordinates Reverse (-)

25366430 .. 25367602

Gene Structure 1173 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1209000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGTACAATCAAAGAAGTTCAGAGGGGTCAGGCAACGCCACTGGGGCTCCTGGGTTTCTGAGATTCGTCATCCATTACTGAAAAGAAGGGTGTGGCTTGGGACATTTGAGACAGCTGAAGAAGCAGCAAGAGCGTATGATGAGGCGGCAATTTTGATGAGTGGGAGAAATGCCAAAACAAACTTTCCAGTCTTCACAAATGAAATGGCTGCAGCTAACGATCTTAACAACAATTCTAGCAACAGCAACAACAACTCTTCCACCTCTTCCACAACACTTTCAGCAATCCTCAGTGCCAAGCTTCGCAAGTGCTGCAAGTCCCCGTCTCCTTCCCTCACTTGCCTGAGGCTGGACACAGAGAATTCCCTCATCGGGGTCTGGCAAAAGGGTGCTGGACCCCGGTCGGATTCAAACTGGCTGATGATGGTTGAGCTGGACCAGAAGAGTCGTTTGCAAGCACCCCAATCAGAAATTAGTAGTAGTACCTCTTGTGCTTTGGATACTGAGGGAATGGCAGGTGGGCAGGAAGGTGGGGATGTTGATAATAGGATGATGGATGAGGAGGAAAGGGTTGCATTGCAGATGATAGAGGAACTTCTGAATAGAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010143 GO:0010166 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043170 GO:0043565 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901568 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

204

Amino Acids

22.5

Weight (kDa)

6.18

Isoelectric Point (pI)

64.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	6 - 53	7.3e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15360 AT1G15360
fragaria_vesca	FvH4_1g03190 FvH4_6g29930
malus_domestica	MD02G1030900.v1.1 MD15G1172600.v1.1 MD17G1209000.v1.1
prunus_persica	Prupe.3G084600_v2.0.a1 Prupe.7G243600_v2.0.a1
pyrus_communis	pycom15g15430
rosa_chinensis	RchiOBHm_Chr2g0088321 RchiOBHm_Chr2g0135921 RchiOBHm_Chr7g0230931
rosa_laevigata	RLG00000015943 RLG00000019490
rosa_multiflora	Rmu_sc0000483.1_g000022 Rmu_sc0004235.1_g000029 Rmu_sc0004243.1_g000002
rosa_roxburghii	Rroxscaffold_2G00108770 Rroxscaffold_2G00152750 Rroxscaffold_3G00229670
rosa_rugosa	Rorug01G0482900 Rorug02G0326900 Rorug07G0263300 Rorug07G0263400
rosa_samantha	Rh2AG378500 Rh2BG037200 Rh2BG385100 Rh2CG038300 Rh2CG364200 Rh2DG401400 Rh7AG416500 Rh7CG435700 Rh7DG410800
rosa_wichuraiana	Rw2G003000 Rw2G030840 Rw7G034490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	506
Acc36I	ACCTGC	1 cut(s)	506
AciI	CCGC	1 cut(s)	146
AcsI	RAATTY	1 cut(s)	361
AcuI	CTGAAG	1 cut(s)	138
AfaI	GTAC	2 cut(s)	6, 484
AfiI	CCNNNNNNNGG	3 cut(s)	349, 372, 373
AgsI	TTSAA	1 cut(s)	411
AjnI	CCWGG	1 cut(s)	50
AluBI	AGCT	4 cut(s)	116, 215, 301, 433
AluI	AGCT	4 cut(s)	116, 215, 301, 433
Alw26I	GTCTC	2 cut(s)	104, 330
ApeKI	GCWGC	4 cut(s)	125, 209, 212, 312
ApoI	RAATTY	1 cut(s)	361
AspS9I	GGNCC	2 cut(s)	395, 436
AsuC2I	CCSGG	1 cut(s)	400
AvaII	GGWCC	2 cut(s)	395, 436
AxyI	CCTNAGG	1 cut(s)	344
BanII	GRGCYC	1 cut(s)	50
BbsI	GAAGAC	1 cut(s)	184
BbvI	GCAGC	4 cut(s)	137, 196, 224, 299
BccI	CCATC	2 cut(s)	418, 547
BciT130I	CCWGG	1 cut(s)	52
BciVI	GTATCC	1 cut(s)	493
BcnI	CCSGG	1 cut(s)	400
BcoDI	GTCTC	2 cut(s)	104, 330
BfaI	CTAG	1 cut(s)	237
BfmI	CTRYAG	1 cut(s)	210
BfuAI	ACCTGC	1 cut(s)	506
BfuI	GTATCC	1 cut(s)	493
BglI	GCCNNNNNGGC	1 cut(s)	45
BisI	GCNGC	5 cut(s)	126, 147, 210, 213, 313
BlsI	GCNGC	5 cut(s)	127, 148, 211, 214, 314
Bme1390I	CCNGG	2 cut(s)	52, 400
Bme18I	GGWCC	2 cut(s)	395, 436
BmgT120I	GGNCC	2 cut(s)	395, 436
BmiI	GGNNCC	2 cut(s)	49, 397
BmrFI	CCNGG	2 cut(s)	52, 400
BmrI	ACTGGG	1 cut(s)	52
BmuI	ACTGGG	1 cut(s)	52
BoxI	GACNNNNGTC	1 cut(s)	400
BpiI	GAAGAC	1 cut(s)	184
BpuMI	CCSGG	1 cut(s)	400
BsaJI	CCNNGG	2 cut(s)	51, 398
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bsc4I	CCNNNNNNNGG	3 cut(s)	349, 372, 373
Bse1I	ACTGG	3 cut(s)	47, 188, 419
Bse21I	CCTNAGG	1 cut(s)	344
Bse3DI	GCAATG	1 cut(s)	575
BseBI	CCWGG	1 cut(s)	52
BseDI	CCNNGG	2 cut(s)	51, 398
BseGI	GGATG	4 cut(s)	70, 541, 555, 562
BseLI	CCNNNNNNNGG	3 cut(s)	349, 372, 373
BseMI	GCAATG	1 cut(s)	575
BseMII	CTCAG	4 cut(s)	51, 304, 335, 495
BseNI	ACTGG	3 cut(s)	47, 188, 419
BseRI	GAGGAG	1 cut(s)	575
BseXI	GCAGC	4 cut(s)	137, 196, 224, 299
Bsh1285I	CGRYCG	1 cut(s)	404
BsiEI	CGRYCG	1 cut(s)	404
BsiSI	CCGG	1 cut(s)	400
BslFI	GGGAC	2 cut(s)	115, 304
BslI	CCNNNNNNNGG	3 cut(s)	349, 372, 373
BsmAI	GTCTC	2 cut(s)	104, 330
BsmBI	CGTCTC	1 cut(s)	330
BsmFI	GGGAC	2 cut(s)	115, 304
Bsp1286I	GDGCHC	1 cut(s)	50
Bsp143I	GATC	1 cut(s)	220
BspACI	CCGC	1 cut(s)	146
BspCNI	CTCAG	4 cut(s)	52, 303, 336, 496
BspLI	GGNNCC	2 cut(s)	49, 397
BspMAI	CTGCAG	1 cut(s)	214
BspMI	ACCTGC	1 cut(s)	506
BsrDI	GCAATG	1 cut(s)	575
BsrI	ACTGG	3 cut(s)	47, 188, 419
BssECI	CCNNGG	2 cut(s)	51, 398
BssMI	GATC	1 cut(s)	220
Bst2UI	CCWGG	1 cut(s)	52
Bst6I	CTCTTC	3 cut(s)	262, 271, 437
BstAPI	GCANNNNNTGC	1 cut(s)	312
BstC8I	GCNNGC	1 cut(s)	456
BstDEI	CTNAG	4 cut(s)	60, 290, 344, 504
BstF5I	GGATG	4 cut(s)	70, 541, 555, 562
BstKTI	GATC	1 cut(s)	223
BstMAI	GTCTC	2 cut(s)	104, 330
BstMBI	GATC	1 cut(s)	220
BstMCI	CGRYCG	1 cut(s)	404
BstMWI	GCNNNNNNNGC	4 cut(s)	45, 122, 131, 312
BstNI	CCWGG	1 cut(s)	52
BstPAI	GACNNNNGTC	1 cut(s)	400
BstSCI	CCNGG	2 cut(s)	50, 398
BstSFI	CTRYAG	1 cut(s)	210
BstV1I	GCAGC	4 cut(s)	137, 196, 224, 299
BstV2I	GAAGAC	1 cut(s)	184
Bsu36I	CCTNAGG	1 cut(s)	344
BsuI	GTATCC	1 cut(s)	493
BtsCI	GGATG	4 cut(s)	70, 541, 555, 562
BtsIMutI	CAGTG	2 cut(s)	40, 298
BveI	ACCTGC	1 cut(s)	506
Cac8I	GCNNGC	1 cut(s)	456
Cfr13I	GGNCC	2 cut(s)	395, 436
Csp6I	GTAC	2 cut(s)	5, 483
CviJI	RGCY	9 cut(s)	48, 97, 116, 209, 215, 301, 349, 418, 433
CviKI_1	RGCY	9 cut(s)	48, 97, 116, 209, 215, 301, 349, 418, 433
CviQI	GTAC	2 cut(s)	5, 483
DdeI	CTNAG	4 cut(s)	60, 290, 344, 504
DpnI	GATC	1 cut(s)	222
DpnII	GATC	1 cut(s)	220
Eam1104I	CTCTTC	3 cut(s)	262, 271, 437
EarI	CTCTTC	3 cut(s)	262, 271, 437
Eco24I	GRGCYC	1 cut(s)	50
Eco47I	GGWCC	2 cut(s)	395, 436
Eco57I	CTGAAG	1 cut(s)	138
Eco81I	CCTNAGG	1 cut(s)	344
EcoRI	GAATTC	1 cut(s)	361
EcoRII	CCWGG	1 cut(s)	50
EcoT38I	GRGCYC	1 cut(s)	50
Esp3I	CGTCTC	1 cut(s)	330
FaiI	YATR	1 cut(s)	138
FaqI	GGGAC	2 cut(s)	115, 304
Fnu4HI	GCNGC	5 cut(s)	126, 147, 210, 213, 313
FokI	GGATG	4 cut(s)	57, 548, 562, 569
FriOI	GRGCYC	1 cut(s)	50
Fsp4HI	GCNGC	5 cut(s)	126, 147, 210, 213, 313
FspBI	CTAG	1 cut(s)	237
GluI	GCNGC	5 cut(s)	126, 147, 210, 213, 313
HapII	CCGG	1 cut(s)	400
HindIII	AAGCTT	1 cut(s)	299
HinfI	GANTC	3 cut(s)	64, 407, 445
HpaII	CCGG	1 cut(s)	400
Hpy188I	TCNGA	5 cut(s)	23, 61, 406, 469, 600
HpyAV	CCTTC	3 cut(s)	81, 339, 521
HpyCH4V	TGCA	5 cut(s)	212, 315, 454, 575, 580
HpyF10VI	GCNNNNNNNGC	4 cut(s)	45, 122, 131, 312
HpyF3I	CTNAG	4 cut(s)	60, 290, 344, 504
Kzo9I	GATC	1 cut(s)	220
LmnI	GCTCC	1 cut(s)	53
Lsp1109I	GCAGC	4 cut(s)	137, 196, 224, 299
MaeI	CTAG	1 cut(s)	237
MalI	GATC	1 cut(s)	222
MboI	GATC	1 cut(s)	220
MboII	GAAGA	5 cut(s)	131, 184, 249, 258, 454
MhlI	GDGCHC	1 cut(s)	50
MluCI	AATT	5 cut(s)	150, 232, 361, 471, 607
MlyI	GAGTC	1 cut(s)	454
MmeI	TCCRAC	1 cut(s)	384
MseI	TTAA	1 cut(s)	225
MspA1I	CMGCKG	1 cut(s)	116
MspI	CCGG	1 cut(s)	400
MspR9I	CCNGG	2 cut(s)	52, 400
MvaI	CCWGG	1 cut(s)	52
MwoI	GCNNNNNNNGC	4 cut(s)	45, 122, 131, 312
NciI	CCSGG	1 cut(s)	400
NdeII	GATC	1 cut(s)	220
NlaIV	GGNNCC	2 cut(s)	49, 397
PaqCI	CACCTGC	1 cut(s)	506
PfeI	GAWTC	2 cut(s)	64, 407
PkrI	GCNGC	5 cut(s)	127, 148, 211, 214, 314
PleI	GAGTC	1 cut(s)	453
PpsI	GAGTC	1 cut(s)	453
PshAI	GACNNNNGTC	1 cut(s)	400
Psp6I	CCWGG	1 cut(s)	50
PspGI	CCWGG	1 cut(s)	50
PspN4I	GGNNCC	2 cut(s)	49, 397
PspPI	GGNCC	2 cut(s)	395, 436
PstI	CTGCAG	1 cut(s)	214
PvuII	CAGCTG	1 cut(s)	116
RsaI	GTAC	2 cut(s)	6, 484
RsaNI	GTAC	2 cut(s)	5, 483
SaqAI	TTAA	1 cut(s)	225
SatI	GCNGC	5 cut(s)	126, 147, 210, 213, 313
Sau3AI	GATC	1 cut(s)	220
Sau96I	GGNCC	2 cut(s)	395, 436
SchI	GAGTC	1 cut(s)	454
ScrFI	CCNGG	2 cut(s)	52, 400
SduI	GDGCHC	1 cut(s)	50
SetI	ASST	8 cut(s)	118, 217, 266, 303, 435, 488, 520, 532
SfcI	CTRYAG	1 cut(s)	210
SinI	GGWCC	2 cut(s)	395, 436
Sse9I	AATT	5 cut(s)	150, 232, 361, 471, 607
SsiI	CCGC	1 cut(s)	146
SspMI	CTAG	1 cut(s)	237
StyD4I	CCNGG	2 cut(s)	50, 398
TasI	AATT	5 cut(s)	150, 232, 361, 471, 607
TauI	GCSGC	1 cut(s)	149
TfiI	GAWTC	2 cut(s)	64, 407
Tru1I	TTAA	1 cut(s)	225
Tru9I	TTAA	1 cut(s)	225
TscAI	CASTG	2 cut(s)	47, 298
TseI	GCWGC	4 cut(s)	125, 209, 212, 312
TspDTI	ATGAA	1 cut(s)	216
TspRI	CASTG	2 cut(s)	47, 298
VpaK11BI	GGWCC	2 cut(s)	395, 436
XapI	RAATTY	1 cut(s)	361
XspI	CTAG	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.