Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003109

Physical Location & Seq

Genomic Coordinates Reverse (-)

32852669 .. 32854076

Gene Structure 1408 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00108770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGTACAATCAAAGAAGTTCAGAGGTGTCAGGCAACGCCACTGGGGCTCCTGGGTTTCTGAGATTCGTCATCCATTACTGAAAAGGAGGGTGTGGCTTGGGACATTTGAGAGTGCAGAAGAGGCAGCACGAGCCTACGACGAGGCTGCGATTCTGATGAGCGGTCGAAATGCCAAAACAAACTTTCCAGTCACTACAAATGAAATTGCAGCTGCTAGTAAGGATCCTATCAACAAGCAGAGCAACTCCAGTAGTCCTTCTTCTTCACTTTCTACAATCCTCAACGCCAAGCTTCGCAAGTGTTGCAAGTCTCCCTCTCCTTCCCTCACTTGCCTCAGGCTCGACACTGAGAATTCTCATATTGGCGTTTGGCAAAAGCGCGCCGGGCCACGTTCAGATTCGAATTGGTTGATGATGGTGGAACTGGGACAGAAGAGTGATATAAAAGAGGAGAAGGAGGAGAGTACTAGCGCCCCTGAATTGCCCGATGGACACGAAACGGAAGGAGTACACGGTGGGGATGATAGATTGCACGAGGAGGAAAGGATTGCACTGCAGATGATAGAGGAACTTCTCAATAGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010143 GO:0010166 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043170 GO:0043565 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901568 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

195

Amino Acids

21.91

Weight (kDa)

7.02

Isoelectric Point (pI)

73.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	6 - 53	3.1e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15360 AT1G15360
fragaria_vesca	FvH4_1g03190 FvH4_6g29930
malus_domestica	MD02G1030900.v1.1 MD15G1172600.v1.1 MD17G1209000.v1.1
prunus_persica	Prupe.3G084600_v2.0.a1 Prupe.7G243600_v2.0.a1
pyrus_communis	pycom15g15430
rosa_chinensis	RchiOBHm_Chr2g0088321 RchiOBHm_Chr2g0135921 RchiOBHm_Chr7g0230931
rosa_laevigata	RLG00000015943 RLG00000019490
rosa_multiflora	Rmu_sc0000483.1_g000022 Rmu_sc0004235.1_g000029 Rmu_sc0004243.1_g000002
rosa_roxburghii	Rroxscaffold_2G00108770 Rroxscaffold_2G00152750 Rroxscaffold_3G00229670
rosa_rugosa	Rorug01G0482900 Rorug02G0326900 Rorug07G0263300 Rorug07G0263400
rosa_samantha	Rh2AG378500 Rh2BG037200 Rh2BG385100 Rh2CG038300 Rh2CG364200 Rh2DG401400 Rh7AG416500 Rh7CG435700 Rh7DG410800
rosa_wichuraiana	Rw2G003000 Rw2G030840 Rw7G034490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	162
AccII	CGCG	1 cut(s)	381
AciI	CCGC	1 cut(s)	162
AclWI	GGATC	2 cut(s)	218, 231
AcsI	RAATTY	1 cut(s)	352
AfaI	GTAC	3 cut(s)	6, 466, 510
AjnI	CCWGG	1 cut(s)	50
AluBI	AGCT	2 cut(s)	212, 292
AluI	AGCT	2 cut(s)	212, 292
Alw26I	GTCTC	1 cut(s)	315
AlwI	GGATC	2 cut(s)	218, 231
AoxI	GGCC	1 cut(s)	386
ApeKI	GCWGC	4 cut(s)	125, 146, 209, 212
ApoI	RAATTY	1 cut(s)	352
AspLEI	GCGC	3 cut(s)	381, 383, 473
AspS9I	GGNCC	1 cut(s)	386
AsuC2I	CCSGG	1 cut(s)	385
AsuII	TTCGAA	1 cut(s)	401
AxyI	CCTNAGG	1 cut(s)	335
BamHI	GGATCC	1 cut(s)	223
BanII	GRGCYC	1 cut(s)	50
BarI	GAAGNNNNNNTAC	2 cut(s)	244, 276
BauI	CACGAG	2 cut(s)	129, 533
BbvI	GCAGC	4 cut(s)	133, 137, 199, 221
BccI	CCATC	2 cut(s)	409, 482
BcgI	CGANNNNNNTGC	2 cut(s)	128, 162
BciT130I	CCWGG	1 cut(s)	52
BcnI	CCSGG	1 cut(s)	385
BcoDI	GTCTC	1 cut(s)	315
BfaI	CTAG	2 cut(s)	216, 468
BfmI	CTRYAG	1 cut(s)	554
BfoI	RGCGCY	1 cut(s)	474
BglI	GCCNNNNNGGC	1 cut(s)	45
BisI	GCNGC	4 cut(s)	126, 147, 210, 213
BlsI	GCNGC	4 cut(s)	127, 148, 211, 214
BmcAI	AGTACT	1 cut(s)	466
Bme1390I	CCNGG	2 cut(s)	52, 385
BmgT120I	GGNCC	1 cut(s)	386
BmiI	GGNNCC	2 cut(s)	49, 225
BmrFI	CCNGG	2 cut(s)	52, 385
BmrI	ACTGGG	2 cut(s)	52, 434
BmuI	ACTGGG	2 cut(s)	52, 434
BpmI	CTGGAG	1 cut(s)	232
Bpu14I	TTCGAA	1 cut(s)	401
BpuMI	CCSGG	1 cut(s)	385
BsaJI	CCNNGG	1 cut(s)	51
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bse1I	ACTGG	4 cut(s)	47, 188, 249, 429
Bse21I	CCTNAGG	1 cut(s)	335
BseBI	CCWGG	1 cut(s)	52
BseDI	CCNNGG	1 cut(s)	51
BseGI	GGATG	2 cut(s)	70, 526
BseMII	CTCAG	3 cut(s)	51, 339, 349
BseNI	ACTGG	4 cut(s)	47, 188, 249, 429
BsePI	GCGCGC	1 cut(s)	379
BseRI	GAGGAG	3 cut(s)	464, 473, 551
BseXI	GCAGC	4 cut(s)	133, 137, 199, 221
BsgI	GTGCAG	1 cut(s)	135
Bsh1236I	CGCG	1 cut(s)	381
Bsh1285I	CGRYCG	1 cut(s)	166
BshFI	GGCC	1 cut(s)	388
BsiEI	CGRYCG	1 cut(s)	166
BsiSI	CCGG	1 cut(s)	384
BslFI	GGGAC	2 cut(s)	115, 441
BsmAI	GTCTC	1 cut(s)	315
BsmFI	GGGAC	2 cut(s)	115, 441
BsnI	GGCC	1 cut(s)	388
Bsp119I	TTCGAA	1 cut(s)	401
Bsp1286I	GDGCHC	1 cut(s)	50
Bsp143I	GATC	1 cut(s)	223
BspACI	CCGC	1 cut(s)	162
BspANI	GGCC	1 cut(s)	388
BspCNI	CTCAG	3 cut(s)	52, 340, 348
BspFNI	CGCG	1 cut(s)	381
BspLI	GGNNCC	2 cut(s)	49, 225
BspMAI	CTGCAG	1 cut(s)	558
BspPI	GGATC	2 cut(s)	218, 231
BspT104I	TTCGAA	1 cut(s)	401
BsrBI	CCGCTC	1 cut(s)	162
BsrI	ACTGG	4 cut(s)	47, 188, 249, 429
BssECI	CCNNGG	1 cut(s)	51
BssHII	GCGCGC	1 cut(s)	379
BssMI	GATC	1 cut(s)	223
BssSI	CACGAG	2 cut(s)	129, 533
Bst2BI	CACGAG	2 cut(s)	129, 533
Bst2UI	CCWGG	1 cut(s)	52
Bst4CI	ACNGT	1 cut(s)	515
Bst6I	CTCTTC	2 cut(s)	114, 428
BstAPI	GCANNNNNTGC	1 cut(s)	303
BstBI	TTCGAA	1 cut(s)	401
BstC8I	GCNNGC	1 cut(s)	381
BstDEI	CTNAG	3 cut(s)	60, 335, 348
BstF5I	GGATG	2 cut(s)	70, 526
BstFNI	CGCG	1 cut(s)	381
BstH2I	RGCGCY	1 cut(s)	474
BstHHI	GCGC	3 cut(s)	381, 383, 473
BstKTI	GATC	1 cut(s)	226
BstMAI	GTCTC	1 cut(s)	315
BstMBI	GATC	1 cut(s)	223
BstMCI	CGRYCG	1 cut(s)	166
BstMWI	GCNNNNNNNGC	5 cut(s)	45, 122, 131, 303, 385
BstNI	CCWGG	1 cut(s)	52
BstSCI	CCNGG	2 cut(s)	50, 383
BstSFI	CTRYAG	1 cut(s)	554
BstUI	CGCG	1 cut(s)	381
BstV1I	GCAGC	4 cut(s)	133, 137, 199, 221
BstX2I	RGATCY	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	223
Bsu36I	CCTNAGG	1 cut(s)	335
BsuRI	GGCC	1 cut(s)	388
BtsCI	GGATG	2 cut(s)	70, 526
BtsI	GCAGTG	1 cut(s)	551
BtsIMutI	CAGTG	3 cut(s)	40, 345, 551
Cac8I	GCNNGC	1 cut(s)	381
CfoI	GCGC	3 cut(s)	381, 383, 473
Cfr13I	GGNCC	1 cut(s)	386
Csp6I	GTAC	3 cut(s)	5, 465, 509
CviJI	RGCY	8 cut(s)	48, 97, 134, 146, 212, 292, 340, 388
CviKI_1	RGCY	8 cut(s)	48, 97, 134, 146, 212, 292, 340, 388
CviQI	GTAC	3 cut(s)	5, 465, 509
DdeI	CTNAG	3 cut(s)	60, 335, 348
DpnI	GATC	1 cut(s)	225
DpnII	GATC	1 cut(s)	223
Eam1104I	CTCTTC	2 cut(s)	114, 428
EarI	CTCTTC	2 cut(s)	114, 428
Eco24I	GRGCYC	1 cut(s)	50
Eco81I	CCTNAGG	1 cut(s)	335
EcoRI	GAATTC	1 cut(s)	352
EcoRII	CCWGG	1 cut(s)	50
EcoT38I	GRGCYC	1 cut(s)	50
FaiI	YATR	2 cut(s)	360, 443
FaqI	GGGAC	2 cut(s)	115, 441
Fnu4HI	GCNGC	4 cut(s)	126, 147, 210, 213
FokI	GGATG	2 cut(s)	57, 533
FriOI	GRGCYC	1 cut(s)	50
Fsp4HI	GCNGC	4 cut(s)	126, 147, 210, 213
FspBI	CTAG	2 cut(s)	216, 468
GlaI	GCGC	3 cut(s)	380, 382, 472
GluI	GCNGC	4 cut(s)	126, 147, 210, 213
GsuI	CTGGAG	1 cut(s)	232
HaeII	RGCGCY	1 cut(s)	474
HaeIII	GGCC	1 cut(s)	388
HapII	CCGG	1 cut(s)	384
HhaI	GCGC	3 cut(s)	381, 383, 473
Hin6I	GCGC	3 cut(s)	379, 381, 471
HinP1I	GCGC	3 cut(s)	379, 381, 471
HindIII	AAGCTT	1 cut(s)	290
HinfI	GANTC	3 cut(s)	64, 151, 398
HpaII	CCGG	1 cut(s)	384
Hpy166II	GTNNAC	1 cut(s)	511
Hpy188I	TCNGA	4 cut(s)	23, 61, 156, 397
Hpy8I	GTNNAC	1 cut(s)	511
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	4 cut(s)	267, 330, 448, 497
HpyCH4III	ACNGT	1 cut(s)	515
HpyCH4IV	ACGT	1 cut(s)	391
HpyCH4V	TGCA	6 cut(s)	116, 209, 306, 532, 551, 556
HpyF10VI	GCNNNNNNNGC	5 cut(s)	45, 122, 131, 303, 385
HpyF3I	CTNAG	3 cut(s)	60, 335, 348
HpySE526I	ACGT	1 cut(s)	391
HspAI	GCGC	3 cut(s)	379, 381, 471
Kzo9I	GATC	1 cut(s)	223
LmnI	GCTCC	1 cut(s)	53
Lsp1109I	GCAGC	4 cut(s)	133, 137, 199, 221
MaeI	CTAG	2 cut(s)	216, 468
MaeII	ACGT	1 cut(s)	391
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	1 cut(s)	225
MbiI	CCGCTC	1 cut(s)	162
MboI	GATC	1 cut(s)	223
MboII	GAAGA	4 cut(s)	131, 252, 255, 445
MflI	RGATCY	1 cut(s)	223
MhlI	GDGCHC	1 cut(s)	50
MluCI	AATT	5 cut(s)	204, 352, 403, 479, 583
MseI	TTAA	1 cut(s)	586
MspA1I	CMGCKG	1 cut(s)	212
MspI	CCGG	1 cut(s)	384
MspR9I	CCNGG	2 cut(s)	52, 385
MvaI	CCWGG	1 cut(s)	52
MvnI	CGCG	1 cut(s)	381
MwoI	GCNNNNNNNGC	5 cut(s)	45, 122, 131, 303, 385
NciI	CCSGG	1 cut(s)	385
NdeII	GATC	1 cut(s)	223
NlaIV	GGNNCC	2 cut(s)	49, 225
NmuCI	GTSAC	1 cut(s)	190
NspV	TTCGAA	1 cut(s)	401
PauI	GCGCGC	1 cut(s)	379
PfeI	GAWTC	3 cut(s)	64, 151, 398
PkrI	GCNGC	4 cut(s)	127, 148, 211, 214
Psp6I	CCWGG	1 cut(s)	50
PspGI	CCWGG	1 cut(s)	50
PspN4I	GGNNCC	2 cut(s)	49, 225
PspPI	GGNCC	1 cut(s)	386
PstI	CTGCAG	1 cut(s)	558
PsuI	RGATCY	1 cut(s)	223
PteI	GCGCGC	1 cut(s)	379
PvuII	CAGCTG	1 cut(s)	212
RsaI	GTAC	3 cut(s)	6, 466, 510
RsaNI	GTAC	3 cut(s)	5, 465, 509
SaqAI	TTAA	1 cut(s)	586
SatI	GCNGC	4 cut(s)	126, 147, 210, 213
Sau3AI	GATC	1 cut(s)	223
Sau96I	GGNCC	1 cut(s)	386
ScaI	AGTACT	1 cut(s)	466
ScrFI	CCNGG	2 cut(s)	52, 385
SduI	GDGCHC	1 cut(s)	50
SetI	ASST	4 cut(s)	28, 214, 294, 394
SfcI	CTRYAG	1 cut(s)	554
SfuI	TTCGAA	1 cut(s)	401
Sse9I	AATT	5 cut(s)	204, 352, 403, 479, 583
SsiI	CCGC	1 cut(s)	162
SspMI	CTAG	2 cut(s)	216, 468
StyD4I	CCNGG	2 cut(s)	50, 383
TaaI	ACNGT	1 cut(s)	515
TaiI	ACGT	1 cut(s)	394
TaqI	TCGA	3 cut(s)	166, 342, 401
TasI	AATT	5 cut(s)	204, 352, 403, 479, 583
TatI	WGTACW	2 cut(s)	464, 508
TfiI	GAWTC	3 cut(s)	64, 151, 398
Tru1I	TTAA	1 cut(s)	586
Tru9I	TTAA	1 cut(s)	586
TscAI	CASTG	3 cut(s)	47, 352, 558
TseFI	GTSAC	1 cut(s)	190
TseI	GCWGC	4 cut(s)	125, 146, 209, 212
Tsp45I	GTSAC	1 cut(s)	190
TspDTI	ATGAA	1 cut(s)	216
TspGWI	ACGGA	1 cut(s)	515
TspRI	CASTG	3 cut(s)	47, 352, 558
XapI	RAATTY	1 cut(s)	352
XspI	CTAG	2 cut(s)	216, 468
ZrmI	AGTACT	1 cut(s)	466

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.