Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0003109

Physical Location & Seq

Genomic Coordinates Forward (+)

51198854 .. 51199725

Gene Structure 872 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G034490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGTACAATCAAAGAAGTTCCGAGGGGTCAGGCAACGCCACTGGGGCTCTTGGGTATCTGAGATTCGTCATCCATTACTGAAAAGGAGGATGTGGCTTGGGACATTTGAGAGTGCAGAAGAGGCAGCACGAGCCTACGACGAGGCTGCGATTCTGATGAGTGGTCGAAATGCCAAAACAAACTTTCCGGTCACCACAAATGAAATTGCAGCTGCTAATAATAAGAACTCTATTAACAACAAGAGCAACTCCAGCAGTACTACTACTACTTCACCTTCTGAAACCCTCAGCGCCAAGCTTCGCAAGTGTTGCTCTGCTTCCCTCACTTGCCTCAGGCTCGACACCGAGAATTCCCACATCGGAGTTTGGCAAAAGCGCGCTGGGCCACGCTCAGATTCGAATTGGCTGATGATGGTGGAGCTGGGACGGAAGAGTGGTTTAGAAGCGGAGAAGGTGGAGAGTACTATCGTCCCTCAAGTGTCCGATGGACATGAAACGCAAGGATTTAACGAGGAGAAAAGGATTGCATTGCAGATGATAGAGGAACTTCTGAGTAGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010143 GO:0010166 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043170 GO:0043565 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901568 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

187

Amino Acids

20.98

Weight (kDa)

9.43

Isoelectric Point (pI)

60.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	6 - 53	1.2e-11	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15360 AT1G15360
fragaria_vesca	FvH4_1g03190 FvH4_6g29930
malus_domestica	MD02G1030900.v1.1 MD15G1172600.v1.1 MD17G1209000.v1.1
prunus_persica	Prupe.3G084600_v2.0.a1 Prupe.7G243600_v2.0.a1
pyrus_communis	pycom15g15430
rosa_chinensis	RchiOBHm_Chr2g0088321 RchiOBHm_Chr2g0135921 RchiOBHm_Chr7g0230931
rosa_laevigata	RLG00000015943 RLG00000019490
rosa_multiflora	Rmu_sc0000483.1_g000022 Rmu_sc0004235.1_g000029 Rmu_sc0004243.1_g000002
rosa_roxburghii	Rroxscaffold_2G00108770 Rroxscaffold_2G00152750 Rroxscaffold_3G00229670
rosa_rugosa	Rorug01G0482900 Rorug02G0326900 Rorug07G0263300 Rorug07G0263400
rosa_samantha	Rh2AG378500 Rh2BG037200 Rh2BG385100 Rh2CG038300 Rh2CG364200 Rh2DG401400 Rh7AG416500 Rh7CG435700 Rh7DG410800
rosa_wichuraiana	Rw2G003000 Rw2G030840 Rw7G034490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	378
AciI	CCGC	1 cut(s)	446
AcsI	RAATTY	1 cut(s)	349
AfaI	GTAC	3 cut(s)	6, 259, 463
AluBI	AGCT	3 cut(s)	212, 298, 421
AluI	AGCT	3 cut(s)	212, 298, 421
AoxI	GGCC	1 cut(s)	383
ApeKI	GCWGC	4 cut(s)	125, 146, 209, 212
ApoI	RAATTY	1 cut(s)	349
AspLEI	GCGC	3 cut(s)	293, 378, 380
AspS9I	GGNCC	1 cut(s)	383
AsuHPI	GGTGA	2 cut(s)	184, 264
AsuII	TTCGAA	1 cut(s)	398
AxyI	CCTNAGG	1 cut(s)	332
BanII	GRGCYC	1 cut(s)	50
BauI	CACGAG	1 cut(s)	129
BbvCI	CCTCAGC	1 cut(s)	287
BbvI	GCAGC	4 cut(s)	133, 137, 199, 221
BccI	CCATC	2 cut(s)	406, 479
BcgI	CGANNNNNNTGC	2 cut(s)	128, 162
BfoI	RGCGCY	1 cut(s)	294
BglI	GCCNNNNNGGC	1 cut(s)	45
BisI	GCNGC	4 cut(s)	126, 147, 210, 213
BlsI	GCNGC	4 cut(s)	127, 148, 211, 214
BmcAI	AGTACT	2 cut(s)	259, 463
BmgT120I	GGNCC	1 cut(s)	383
BmrI	ACTGGG	1 cut(s)	52
BmuI	ACTGGG	1 cut(s)	52
BpmI	CTGGAG	1 cut(s)	235
Bpu10I	CCTNAGC	1 cut(s)	287
Bpu14I	TTCGAA	1 cut(s)	398
BpuEI	CTTGAG	1 cut(s)	459
BsaJI	CCNNGG	1 cut(s)	22
BsaWI	WCCGGW	1 cut(s)	187
Bse1I	ACTGG	1 cut(s)	47
Bse21I	CCTNAGG	1 cut(s)	332
Bse3DI	GCAATG	1 cut(s)	527
BseDI	CCNNGG	1 cut(s)	22
BseGI	GGATG	2 cut(s)	70, 96
BseMI	GCAATG	1 cut(s)	527
BseMII	CTCAG	5 cut(s)	51, 301, 346, 405, 542
BseNI	ACTGG	1 cut(s)	47
BsePI	GCGCGC	1 cut(s)	376
BseRI	GAGGAG	1 cut(s)	527
BseXI	GCAGC	4 cut(s)	133, 137, 199, 221
BseYI	CCCAGC	2 cut(s)	380, 421
BsgI	GTGCAG	1 cut(s)	135
Bsh1236I	CGCG	1 cut(s)	378
BshFI	GGCC	1 cut(s)	385
BsiSI	CCGG	1 cut(s)	188
BslFI	GGGAC	3 cut(s)	115, 438, 455
BsmFI	GGGAC	3 cut(s)	115, 438, 455
BsnI	GGCC	1 cut(s)	385
Bsp119I	TTCGAA	1 cut(s)	398
Bsp1286I	GDGCHC	1 cut(s)	50
BspACI	CCGC	1 cut(s)	446
BspANI	GGCC	1 cut(s)	385
BspCNI	CTCAG	5 cut(s)	52, 300, 345, 404, 543
BspFNI	CGCG	1 cut(s)	378
BspT104I	TTCGAA	1 cut(s)	398
BsrDI	GCAATG	1 cut(s)	527
BsrI	ACTGG	1 cut(s)	47
BssECI	CCNNGG	1 cut(s)	22
BssHII	GCGCGC	1 cut(s)	376
BssSI	CACGAG	1 cut(s)	129
Bst2BI	CACGAG	1 cut(s)	129
Bst6I	CTCTTC	2 cut(s)	114, 425
BstAPI	GCANNNNNTGC	1 cut(s)	309
BstBI	TTCGAA	1 cut(s)	398
BstC8I	GCNNGC	1 cut(s)	378
BstDEI	CTNAG	5 cut(s)	60, 287, 332, 391, 551
BstEII	GGTNACC	1 cut(s)	190
BstF5I	GGATG	2 cut(s)	70, 96
BstFNI	CGCG	1 cut(s)	378
BstH2I	RGCGCY	1 cut(s)	294
BstHHI	GCGC	3 cut(s)	293, 378, 380
BstMWI	GCNNNNNNNGC	6 cut(s)	45, 122, 131, 252, 309, 382
BstPI	GGTNACC	1 cut(s)	190
BstUI	CGCG	1 cut(s)	378
BstV1I	GCAGC	4 cut(s)	133, 137, 199, 221
Bsu36I	CCTNAGG	1 cut(s)	332
BsuRI	GGCC	1 cut(s)	385
BtsCI	GGATG	2 cut(s)	70, 96
BtsIMutI	CAGTG	1 cut(s)	40
Cac8I	GCNNGC	1 cut(s)	378
CfoI	GCGC	3 cut(s)	293, 378, 380
Cfr13I	GGNCC	1 cut(s)	383
Csp6I	GTAC	3 cut(s)	5, 258, 462
CviAII	CATG	1 cut(s)	491
CviQI	GTAC	3 cut(s)	5, 258, 462
DdeI	CTNAG	5 cut(s)	60, 287, 332, 391, 551
Eam1104I	CTCTTC	2 cut(s)	114, 425
EarI	CTCTTC	2 cut(s)	114, 425
Eco24I	GRGCYC	1 cut(s)	50
Eco81I	CCTNAGG	1 cut(s)	332
Eco91I	GGTNACC	1 cut(s)	190
EcoO65I	GGTNACC	1 cut(s)	190
EcoRI	GAATTC	1 cut(s)	349
EcoT38I	GRGCYC	1 cut(s)	50
FaeI	CATG	1 cut(s)	494
FaiI	YATR	1 cut(s)	492
FaqI	GGGAC	3 cut(s)	115, 438, 455
FatI	CATG	1 cut(s)	490
Fnu4HI	GCNGC	4 cut(s)	126, 147, 210, 213
FokI	GGATG	2 cut(s)	57, 103
FriOI	GRGCYC	1 cut(s)	50
Fsp4HI	GCNGC	4 cut(s)	126, 147, 210, 213
GlaI	GCGC	3 cut(s)	292, 377, 379
GluI	GCNGC	4 cut(s)	126, 147, 210, 213
GsaI	CCCAGC	2 cut(s)	384, 425
GsuI	CTGGAG	1 cut(s)	235
HaeII	RGCGCY	1 cut(s)	294
HaeIII	GGCC	1 cut(s)	385
HapII	CCGG	1 cut(s)	188
HhaI	GCGC	3 cut(s)	293, 378, 380
Hin1II	CATG	1 cut(s)	494
Hin6I	GCGC	3 cut(s)	291, 376, 378
HinP1I	GCGC	3 cut(s)	291, 376, 378
HindIII	AAGCTT	1 cut(s)	296
HinfI	GANTC	3 cut(s)	64, 151, 395
HpaII	CCGG	1 cut(s)	188
HphI	GGTGA	2 cut(s)	184, 264
Hpy188I	TCNGA	8 cut(s)	23, 61, 156, 280, 362, 394, 484, 552
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	2 cut(s)	285, 445
HpyCH4V	TGCA	4 cut(s)	116, 209, 527, 532
HpyF10VI	GCNNNNNNNGC	6 cut(s)	45, 122, 131, 252, 309, 382
HpyF3I	CTNAG	5 cut(s)	60, 287, 332, 391, 551
Hsp92II	CATG	1 cut(s)	494
HspAI	GCGC	3 cut(s)	291, 376, 378
LmnI	GCTCC	1 cut(s)	418
LpnPI	CCDG	7 cut(s)	16, 28, 201, 265, 319, 366, 407
Lsp1109I	GCAGC	4 cut(s)	133, 137, 199, 221
MaeIII	GTNAC	1 cut(s)	190
MboII	GAAGA	2 cut(s)	131, 442
MhlI	GDGCHC	1 cut(s)	50
MluCI	AATT	4 cut(s)	204, 349, 400, 559
MseI	TTAA	3 cut(s)	234, 507, 562
MspA1I	CMGCKG	1 cut(s)	212
MspI	CCGG	1 cut(s)	188
MvnI	CGCG	1 cut(s)	378
MwoI	GCNNNNNNNGC	6 cut(s)	45, 122, 131, 252, 309, 382
NlaIII	CATG	1 cut(s)	494
NmuCI	GTSAC	1 cut(s)	190
NspV	TTCGAA	1 cut(s)	398
PauI	GCGCGC	1 cut(s)	376
PfeI	GAWTC	3 cut(s)	64, 151, 395
PkrI	GCNGC	4 cut(s)	127, 148, 211, 214
PspEI	GGTNACC	1 cut(s)	190
PspFI	CCCAGC	2 cut(s)	380, 421
PspPI	GGNCC	1 cut(s)	383
PteI	GCGCGC	1 cut(s)	376
PvuII	CAGCTG	1 cut(s)	212
RsaI	GTAC	3 cut(s)	6, 259, 463
RsaNI	GTAC	3 cut(s)	5, 258, 462
SaqAI	TTAA	3 cut(s)	234, 507, 562
SatI	GCNGC	4 cut(s)	126, 147, 210, 213
Sau96I	GGNCC	1 cut(s)	383
ScaI	AGTACT	2 cut(s)	259, 463
SduI	GDGCHC	1 cut(s)	50
SetI	ASST	5 cut(s)	214, 277, 300, 423, 456
SfuI	TTCGAA	1 cut(s)	398
SmlI	CTYRAG	1 cut(s)	474
SmoI	CTYRAG	1 cut(s)	474
Sse9I	AATT	4 cut(s)	204, 349, 400, 559
SsiI	CCGC	1 cut(s)	446
TaqI	TCGA	3 cut(s)	166, 339, 398
TasI	AATT	4 cut(s)	204, 349, 400, 559
TatI	WGTACW	2 cut(s)	257, 461
TfiI	GAWTC	3 cut(s)	64, 151, 395
Tru1I	TTAA	3 cut(s)	234, 507, 562
Tru9I	TTAA	3 cut(s)	234, 507, 562
TscAI	CASTG	1 cut(s)	47
TseFI	GTSAC	1 cut(s)	190
TseI	GCWGC	4 cut(s)	125, 146, 209, 212
Tsp45I	GTSAC	1 cut(s)	190
TspDTI	ATGAA	2 cut(s)	216, 507
TspGWI	ACGGA	1 cut(s)	442
TspRI	CASTG	1 cut(s)	47
XapI	RAATTY	1 cut(s)	349
ZrmI	AGTACT	2 cut(s)	259, 463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.