Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003109

Physical Location & Seq

Genomic Coordinates Reverse (-)

2929726 .. 2930559

Gene Structure 834 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46368

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGTGCAGTCAACAAAGAAGTTTAGAGGTGTCCGGCAGCGGAATTGGGGCTCTTGGGTCTCTGAAATTCGTCATCCACTGCTGAAGAGAAGGGTGTGGCTAGGCACATTTGACAGTGCTGAAGAGGCGGCAAGAGCATATGATGCAGCTGCCATTTTGATGAGTGGCCGAAATGCCAAAACAAATTTCCCAACAACTACTCAAACTAGTAGTAGTACTACTCCGAAAACTAGTACTATTAAGGATTCTTCGTCAACACCAAATGATTTATCAGATATCTTACGCGCAAAGCTGAGGAAATGTAGCAACGTACTCTCTCCATCCCTGACGTGCTTGAGGCTGGACAACGAGAGCTCTCATATCGGAGTCTGGCAAAAGCGAGCAGGTCAACGATCGGATCATTCCAACTGGGTCATGACTGTCCAACTTGGAAAGAAGAATATTAAAGCTGATGATGGTACCACAAACCAGCAAAGTGTTTCATCACCATCAATGTTTTCAGAGTCTCCAGCATCATCATCATTAGAAAAGCCTAAACTAATAGCAGATGCTTATGAAATGACTGAAGAGGAGAGAATTTCATTGCAGATGATAGAGGAGCTGCTTAACAGAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

205

Amino Acids

22.91

Weight (kDa)

9.57

Isoelectric Point (pI)

66.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	7 - 54	6.3e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15360 AT1G15360
fragaria_vesca	FvH4_1g03190 FvH4_6g29930
malus_domestica	MD02G1030900.v1.1 MD15G1172600.v1.1 MD17G1209000.v1.1
prunus_persica	Prupe.3G084600_v2.0.a1 Prupe.7G243600_v2.0.a1
pyrus_communis	pycom15g15430
rosa_chinensis	RchiOBHm_Chr2g0088321 RchiOBHm_Chr2g0135921 RchiOBHm_Chr7g0230931
rosa_laevigata	RLG00000015943 RLG00000019490
rosa_multiflora	Rmu_sc0000483.1_g000022 Rmu_sc0004235.1_g000029 Rmu_sc0004243.1_g000002
rosa_roxburghii	Rroxscaffold_2G00108770 Rroxscaffold_2G00152750 Rroxscaffold_3G00229670
rosa_rugosa	Rorug01G0482900 Rorug02G0326900 Rorug07G0263300 Rorug07G0263400
rosa_samantha	Rh2AG378500 Rh2BG037200 Rh2BG385100 Rh2CG038300 Rh2CG364200 Rh2DG401400 Rh7AG416500 Rh7CG435700 Rh7DG410800
rosa_wichuraiana	Rw2G003000 Rw2G030840 Rw7G034490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	374
Acc65I	GGTACC	1 cut(s)	458
AccB1I	GGYRCC	1 cut(s)	458
AccII	CGCG	1 cut(s)	285
AciI	CCGC	2 cut(s)	40, 128
AclWI	GGATC	1 cut(s)	405
AcoI	YGGCCR	1 cut(s)	166
AcsI	RAATTY	3 cut(s)	66, 184, 576
AcuI	CTGAAG	3 cut(s)	104, 141, 585
AfaI	GTAC	4 cut(s)	217, 235, 312, 460
AhlI	ACTAGT	2 cut(s)	206, 230
AjiI	CACGTC	1 cut(s)	330
AjuI	GAANNNNNNNTTGG	2 cut(s)	170, 202
AluBI	AGCT	5 cut(s)	149, 292, 354, 449, 601
AluI	AGCT	5 cut(s)	149, 292, 354, 449, 601
Alw21I	GWGCWC	1 cut(s)	356
Alw26I	GTCTC	2 cut(s)	64, 510
AlwI	GGATC	1 cut(s)	405
AoxI	GGCC	1 cut(s)	166
ApeKI	GCWGC	4 cut(s)	37, 146, 149, 601
ApoI	RAATTY	3 cut(s)	66, 184, 576
Asp718I	GGTACC	1 cut(s)	458
AspLEI	GCGC	1 cut(s)	287
AsuHPI	GGTGA	1 cut(s)	477
BanI	GGYRCC	1 cut(s)	458
BanII	GRGCYC	2 cut(s)	53, 356
Bbv12I	GWGCWC	1 cut(s)	356
BbvCI	CCTCAGC	1 cut(s)	293
BbvI	GCAGC	4 cut(s)	49, 136, 158, 588
BccI	CCATC	3 cut(s)	328, 449, 496
BcoDI	GTCTC	2 cut(s)	64, 510
BcuI	ACTAGT	2 cut(s)	206, 230
BfaI	CTAG	3 cut(s)	101, 207, 231
BfuAI	ACCTGC	1 cut(s)	374
BisI	GCNGC	5 cut(s)	38, 129, 147, 150, 602
BlsI	GCNGC	5 cut(s)	39, 130, 148, 151, 603
BmcAI	AGTACT	2 cut(s)	217, 235
BmgBI	CACGTC	1 cut(s)	330
BmiI	GGNNCC	1 cut(s)	460
BmrI	ACTGGG	1 cut(s)	418
BmsI	GCATC	3 cut(s)	133, 521, 538
BmuI	ACTGGG	1 cut(s)	418
BpmI	CTGGAG	1 cut(s)	492
Bpu10I	CCTNAGC	1 cut(s)	293
BpuEI	CTTGAG	1 cut(s)	355
BsaI	GGTCTC	1 cut(s)	64
Bse1I	ACTGG	1 cut(s)	413
Bse3DI	GCAATG	1 cut(s)	581
BseGI	GGATG	2 cut(s)	73, 320
BseMI	GCAATG	1 cut(s)	581
BseMII	CTCAG	1 cut(s)	284
BseNI	ACTGG	1 cut(s)	413
BseRI	GAGGAG	2 cut(s)	584, 611
BseXI	GCAGC	4 cut(s)	49, 136, 158, 588
BsgI	GTGCAG	1 cut(s)	26
Bsh1236I	CGCG	1 cut(s)	285
Bsh1285I	CGRYCG	1 cut(s)	395
BshFI	GGCC	1 cut(s)	168
BshNI	GGYRCC	1 cut(s)	458
BsiEI	CGRYCG	1 cut(s)	395
BsiHKAI	GWGCWC	1 cut(s)	356
BsiSI	CCGG	1 cut(s)	34
BsmAI	GTCTC	2 cut(s)	64, 510
BsnI	GGCC	1 cut(s)	168
Bso31I	GGTCTC	1 cut(s)	64
Bsp1286I	GDGCHC	2 cut(s)	53, 356
Bsp143I	GATC	2 cut(s)	392, 397
BspACI	CCGC	2 cut(s)	40, 128
BspANI	GGCC	1 cut(s)	168
BspCNI	CTCAG	1 cut(s)	285
BspFNI	CGCG	1 cut(s)	285
BspHI	TCATGA	1 cut(s)	414
BspLI	GGNNCC	1 cut(s)	460
BspMI	ACCTGC	1 cut(s)	374
BspPI	GGATC	1 cut(s)	405
BspT107I	GGYRCC	1 cut(s)	458
BspTNI	GGTCTC	1 cut(s)	64
BsrDI	GCAATG	1 cut(s)	581
BsrI	ACTGG	1 cut(s)	413
BssMI	GATC	2 cut(s)	392, 397
Bst4CI	ACNGT	2 cut(s)	116, 421
Bst6I	CTCTTC	3 cut(s)	80, 117, 561
BstAPI	GCANNNNNTGC	1 cut(s)	143
BstC8I	GCNNGC	1 cut(s)	381
BstDEI	CTNAG	1 cut(s)	293
BstF5I	GGATG	2 cut(s)	73, 320
BstFNI	CGCG	1 cut(s)	285
BstHHI	GCGC	1 cut(s)	287
BstKTI	GATC	2 cut(s)	395, 400
BstMAI	GTCTC	2 cut(s)	64, 510
BstMBI	GATC	2 cut(s)	392, 397
BstMCI	CGRYCG	1 cut(s)	395
BstMWI	GCNNNNNNNGC	3 cut(s)	125, 134, 143
BstUI	CGCG	1 cut(s)	285
BstV1I	GCAGC	4 cut(s)	49, 136, 158, 588
BsuRI	GGCC	1 cut(s)	168
BtrI	CACGTC	1 cut(s)	330
BtsCI	GGATG	2 cut(s)	73, 320
BtsI	GCAGTG	1 cut(s)	77
BtsIMutI	CAGTG	2 cut(s)	77, 121
BveI	ACCTGC	1 cut(s)	374
Cac8I	GCNNGC	1 cut(s)	381
CciI	TCATGA	1 cut(s)	414
CfoI	GCGC	1 cut(s)	287
Csp6I	GTAC	4 cut(s)	216, 234, 311, 459
CviAII	CATG	1 cut(s)	415
CviQI	GTAC	4 cut(s)	216, 234, 311, 459
DdeI	CTNAG	1 cut(s)	293
DpnI	GATC	2 cut(s)	394, 399
DpnII	GATC	2 cut(s)	392, 397
EaeI	YGGCCR	1 cut(s)	166
Eam1104I	CTCTTC	3 cut(s)	80, 117, 561
EarI	CTCTTC	3 cut(s)	80, 117, 561
Ecl136II	GAGCTC	1 cut(s)	354
Eco24I	GRGCYC	2 cut(s)	53, 356
Eco31I	GGTCTC	1 cut(s)	64
Eco32I	GATATC	1 cut(s)	277
Eco53kI	GAGCTC	1 cut(s)	354
Eco57I	CTGAAG	3 cut(s)	104, 141, 585
EcoICRI	GAGCTC	1 cut(s)	354
EcoRV	GATATC	1 cut(s)	277
EcoT38I	GRGCYC	2 cut(s)	53, 356
FaeI	CATG	1 cut(s)	418
FaiI	YATR	5 cut(s)	139, 141, 360, 416, 555
FatI	CATG	1 cut(s)	414
FauNDI	CATATG	1 cut(s)	139
Fnu4HI	GCNGC	5 cut(s)	38, 129, 147, 150, 602
FokI	GGATG	2 cut(s)	60, 307
FriOI	GRGCYC	2 cut(s)	53, 356
Fsp4HI	GCNGC	5 cut(s)	38, 129, 147, 150, 602
FspBI	CTAG	3 cut(s)	101, 207, 231
GlaI	GCGC	1 cut(s)	286
GluI	GCNGC	5 cut(s)	38, 129, 147, 150, 602
GsuI	CTGGAG	1 cut(s)	492
HaeIII	GGCC	1 cut(s)	168
HapII	CCGG	1 cut(s)	34
HhaI	GCGC	1 cut(s)	287
Hin1II	CATG	1 cut(s)	418
Hin6I	GCGC	1 cut(s)	285
HinP1I	GCGC	1 cut(s)	285
HincII	GTYRAC	3 cut(s)	12, 255, 389
HindII	GTYRAC	3 cut(s)	12, 255, 389
HinfI	GANTC	3 cut(s)	245, 366, 503
HpaII	CCGG	1 cut(s)	34
HphI	GGTGA	1 cut(s)	477
Hpy166II	GTNNAC	3 cut(s)	12, 255, 389
Hpy188I	TCNGA	6 cut(s)	64, 225, 274, 365, 397, 502
Hpy188III	TCNNGA	1 cut(s)	415
Hpy8I	GTNNAC	3 cut(s)	12, 255, 389
HpyAV	CCTTC	1 cut(s)	84
HpyCH4III	ACNGT	2 cut(s)	116, 421
HpyCH4IV	ACGT	2 cut(s)	309, 329
HpyCH4V	TGCA	3 cut(s)	7, 146, 586
HpyF10VI	GCNNNNNNNGC	3 cut(s)	125, 134, 143
HpyF3I	CTNAG	1 cut(s)	293
HpySE526I	ACGT	2 cut(s)	309, 329
Hsp92II	CATG	1 cut(s)	418
HspAI	GCGC	1 cut(s)	285
KpnI	GGTACC	1 cut(s)	462
Kzo9I	GATC	2 cut(s)	392, 397
LmnI	GCTCC	1 cut(s)	598
LpnPI	CCDG	8 cut(s)	47, 326, 338, 355, 369, 394, 482, 522
Lsp1109I	GCAGC	4 cut(s)	49, 136, 158, 588
LweI	GCATC	3 cut(s)	133, 521, 538
MaeI	CTAG	3 cut(s)	101, 207, 231
MaeII	ACGT	2 cut(s)	309, 329
MalI	GATC	2 cut(s)	394, 399
MboI	GATC	2 cut(s)	392, 397
MboII	GAAGA	5 cut(s)	97, 134, 240, 448, 578
MhlI	GDGCHC	2 cut(s)	53, 356
MluCI	AATT	5 cut(s)	43, 66, 184, 576, 613
MlyI	GAGTC	2 cut(s)	375, 512
MmeI	TCCRAC	2 cut(s)	429, 448
MnlI	CCTC	6 cut(s)	20, 118, 288, 330, 562, 589
MseI	TTAA	3 cut(s)	240, 444, 606
MslI	CAYNNNNRTG	1 cut(s)	158
MspA1I	CMGCKG	2 cut(s)	40, 149
MspI	CCGG	1 cut(s)	34
MvnI	CGCG	1 cut(s)	285
MwoI	GCNNNNNNNGC	3 cut(s)	125, 134, 143
NdeI	CATATG	1 cut(s)	139
NdeII	GATC	2 cut(s)	392, 397
NlaIII	CATG	1 cut(s)	418
NlaIV	GGNNCC	1 cut(s)	460
PagI	TCATGA	1 cut(s)	414
PfeI	GAWTC	1 cut(s)	245
PkrI	GCNGC	5 cut(s)	39, 130, 148, 151, 603
Ple19I	CGATCG	1 cut(s)	395
PleI	GAGTC	2 cut(s)	374, 511
PpsI	GAGTC	2 cut(s)	374, 511
Psp124BI	GAGCTC	1 cut(s)	356
PspN4I	GGNNCC	1 cut(s)	460
PvuI	CGATCG	1 cut(s)	395
PvuII	CAGCTG	1 cut(s)	149
RsaI	GTAC	4 cut(s)	217, 235, 312, 460
RsaNI	GTAC	4 cut(s)	216, 234, 311, 459
RseI	CAYNNNNRTG	1 cut(s)	158
SacI	GAGCTC	1 cut(s)	356
SaqAI	TTAA	3 cut(s)	240, 444, 606
SatI	GCNGC	5 cut(s)	38, 129, 147, 150, 602
Sau3AI	GATC	2 cut(s)	392, 397
ScaI	AGTACT	2 cut(s)	217, 235
SchI	GAGTC	2 cut(s)	375, 512
SduI	GDGCHC	2 cut(s)	53, 356
SetI	ASST	9 cut(s)	31, 151, 294, 312, 332, 356, 388, 451, 603
SfaNI	GCATC	3 cut(s)	133, 521, 538
SmiMI	CAYNNNNRTG	1 cut(s)	158
SmlI	CTYRAG	1 cut(s)	334
SmoI	CTYRAG	1 cut(s)	334
SpeI	ACTAGT	2 cut(s)	206, 230
Sse9I	AATT	5 cut(s)	43, 66, 184, 576, 613
SsiI	CCGC	2 cut(s)	40, 128
SspI	AATATT	1 cut(s)	442
SspMI	CTAG	3 cut(s)	101, 207, 231
SstI	GAGCTC	1 cut(s)	356
TaaI	ACNGT	2 cut(s)	116, 421
TaiI	ACGT	2 cut(s)	312, 332
TasI	AATT	5 cut(s)	43, 66, 184, 576, 613
TatI	WGTACW	2 cut(s)	215, 233
TauI	GCSGC	1 cut(s)	131
TfiI	GAWTC	1 cut(s)	245
Tru1I	TTAA	3 cut(s)	240, 444, 606
Tru9I	TTAA	3 cut(s)	240, 444, 606
TscAI	CASTG	2 cut(s)	84, 121
TseI	GCWGC	4 cut(s)	37, 146, 149, 601
TspDTI	ATGAA	3 cut(s)	471, 570, 570
TspRI	CASTG	2 cut(s)	84, 121
XapI	RAATTY	3 cut(s)	66, 184, 576
XspI	CTAG	3 cut(s)	101, 207, 231
ZrmI	AGTACT	2 cut(s)	217, 235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.