Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0003109

Physical Location & Seq

Genomic Coordinates Reverse (-)

6238845 .. 6240412

Gene Structure 1568 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G084600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGTACAATCAAGGAAGTTTAGAGGGGTCAGGCAACGCCACTGGGGCTCCTGGGTTTCTGAGATTCGTCATCCATTACTGAAAAGAAGGGTATGGCTTGGGACATTTGAGACAGCTGAAGAGGCAGCAAGAGCTTATGATGAGGCAGCTATTTTGATGAGTGGTCGAAATGCCAAAACAAACTTTCCAGTCCTCACAAATGAAGTGTCCAATGATCATAACAACAACTCTTCATCATCTTCTTCCTCAGCACTTTCAGCAATCCTCAGTGCCAAACTTCGCAAGTGCTGCAAGTCCCCATCTCCTTCCCTCACTTGCCTGAGGCTTGATACTGAGAATTCTCACATTGGAGTCTGGCAAAAGGGTGCGGGGCCGCACTCTGATTCGAACTGGCTGATGATGGTTGAGCTGGGCCAGAAGAGTTTGCAACCACCCCAGCCAGAAACTAGCACCTCTGCTTTGGACACAGAGGAAATGGCAGCAGGGCAGGATGGTGGGGATGATAGTATGAATGACGAGGAAAGGGTTGCATTGCAGATGATAGAGGAACTTCTGAACAGAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010143 GO:0010166 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043170 GO:0043565 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901568 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

189

Amino Acids

20.86

Weight (kDa)

5.97

Isoelectric Point (pI)

69.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15360 AT1G15360
fragaria_vesca	FvH4_1g03190 FvH4_6g29930
malus_domestica	MD02G1030900.v1.1 MD15G1172600.v1.1 MD17G1209000.v1.1
prunus_persica	Prupe.3G084600_v2.0.a1 Prupe.7G243600_v2.0.a1
pyrus_communis	pycom15g15430
rosa_chinensis	RchiOBHm_Chr2g0088321 RchiOBHm_Chr2g0135921 RchiOBHm_Chr7g0230931
rosa_laevigata	RLG00000015943 RLG00000019490
rosa_multiflora	Rmu_sc0000483.1_g000022 Rmu_sc0004235.1_g000029 Rmu_sc0004243.1_g000002
rosa_roxburghii	Rroxscaffold_2G00108770 Rroxscaffold_2G00152750 Rroxscaffold_3G00229670
rosa_rugosa	Rorug01G0482900 Rorug02G0326900 Rorug07G0263300 Rorug07G0263400
rosa_samantha	Rh2AG378500 Rh2BG037200 Rh2BG385100 Rh2CG038300 Rh2CG364200 Rh2DG401400 Rh7AG416500 Rh7CG435700 Rh7DG410800
rosa_wichuraiana	Rw2G003000 Rw2G030840 Rw7G034490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	368, 374
AcsI	RAATTY	1 cut(s)	337
AcuI	CTGAAG	1 cut(s)	138
AfaI	GTAC	1 cut(s)	6
AjnI	CCWGG	1 cut(s)	50
AluBI	AGCT	4 cut(s)	116, 134, 149, 409
AluI	AGCT	4 cut(s)	116, 134, 149, 409
Alw26I	GTCTC	1 cut(s)	104
AoxI	GGCC	2 cut(s)	371, 412
ApeKI	GCWGC	4 cut(s)	125, 146, 288, 479
ApoI	RAATTY	1 cut(s)	337
ArsI	GACNNNNNNTTYG	2 cut(s)	191, 223
AspS9I	GGNCC	2 cut(s)	371, 412
AsuII	TTCGAA	1 cut(s)	386
AxyI	CCTNAGG	1 cut(s)	320
BanII	GRGCYC	1 cut(s)	50
BbvCI	CCTCAGC	1 cut(s)	247
BbvI	GCAGC	4 cut(s)	137, 158, 275, 491
BccI	CCATC	3 cut(s)	307, 394, 485
BciT130I	CCWGG	1 cut(s)	52
BclI	TGATCA	1 cut(s)	214
BcoDI	GTCTC	1 cut(s)	104
BfaI	CTAG	1 cut(s)	447
BglI	GCCNNNNNGGC	1 cut(s)	45
BisI	GCNGC	5 cut(s)	126, 147, 289, 374, 480
BlsI	GCNGC	5 cut(s)	127, 148, 290, 375, 481
Bme1390I	CCNGG	1 cut(s)	52
BmgT120I	GGNCC	2 cut(s)	371, 412
BmiI	GGNNCC	2 cut(s)	49, 372
BmrFI	CCNGG	1 cut(s)	52
BmrI	ACTGGG	1 cut(s)	52
BmuI	ACTGGG	1 cut(s)	52
Bpu10I	CCTNAGC	1 cut(s)	247
Bpu14I	TTCGAA	1 cut(s)	386
BsaJI	CCNNGG	1 cut(s)	51
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bse1I	ACTGG	3 cut(s)	47, 188, 395
Bse21I	CCTNAGG	1 cut(s)	320
Bse3DI	GCAATG	1 cut(s)	530
BseBI	CCWGG	1 cut(s)	52
BseDI	CCNNGG	1 cut(s)	51
BseGI	GGATG	3 cut(s)	70, 496, 505
BseMI	GCAATG	1 cut(s)	530
BseMII	CTCAG	5 cut(s)	51, 261, 280, 311, 324
BseNI	ACTGG	3 cut(s)	47, 188, 395
BseXI	GCAGC	4 cut(s)	137, 158, 275, 491
BseYI	CCCAGC	2 cut(s)	409, 435
BshFI	GGCC	2 cut(s)	373, 414
BslFI	GGGAC	2 cut(s)	115, 280
BsmAI	GTCTC	1 cut(s)	104
BsmFI	GGGAC	2 cut(s)	115, 280
BsnI	GGCC	2 cut(s)	373, 414
Bsp119I	TTCGAA	1 cut(s)	386
Bsp1286I	GDGCHC	1 cut(s)	50
Bsp143I	GATC	1 cut(s)	214
BspACI	CCGC	2 cut(s)	368, 374
BspANI	GGCC	2 cut(s)	373, 414
BspCNI	CTCAG	5 cut(s)	52, 260, 279, 312, 325
BspLI	GGNNCC	2 cut(s)	49, 372
BspT104I	TTCGAA	1 cut(s)	386
BsrDI	GCAATG	1 cut(s)	530
BsrI	ACTGG	3 cut(s)	47, 188, 395
BssECI	CCNNGG	1 cut(s)	51
BssMI	GATC	1 cut(s)	214
Bst2UI	CCWGG	1 cut(s)	52
Bst6I	CTCTTC	3 cut(s)	114, 235, 413
BstAPI	GCANNNNNTGC	1 cut(s)	288
BstBI	TTCGAA	1 cut(s)	386
BstDEI	CTNAG	5 cut(s)	60, 247, 266, 320, 333
BstF5I	GGATG	3 cut(s)	70, 496, 505
BstKTI	GATC	1 cut(s)	217
BstMAI	GTCTC	1 cut(s)	104
BstMBI	GATC	1 cut(s)	214
BstMWI	GCNNNNNNNGC	5 cut(s)	45, 122, 131, 257, 288
BstNI	CCWGG	1 cut(s)	52
BstSCI	CCNGG	1 cut(s)	50
BstV1I	GCAGC	4 cut(s)	137, 158, 275, 491
Bsu36I	CCTNAGG	1 cut(s)	320
BsuRI	GGCC	2 cut(s)	373, 414
BtsCI	GGATG	3 cut(s)	70, 496, 505
BtsIMutI	CAGTG	2 cut(s)	40, 274
Cfr13I	GGNCC	2 cut(s)	371, 412
Csp6I	GTAC	1 cut(s)	5
CviQI	GTAC	1 cut(s)	5
DdeI	CTNAG	5 cut(s)	60, 247, 266, 320, 333
DpnI	GATC	1 cut(s)	216
DpnII	GATC	1 cut(s)	214
Eam1104I	CTCTTC	3 cut(s)	114, 235, 413
EarI	CTCTTC	3 cut(s)	114, 235, 413
Eco24I	GRGCYC	1 cut(s)	50
Eco57I	CTGAAG	1 cut(s)	138
Eco81I	CCTNAGG	1 cut(s)	320
EcoRI	GAATTC	1 cut(s)	337
EcoRII	CCWGG	1 cut(s)	50
EcoT38I	GRGCYC	1 cut(s)	50
FaiI	YATR	4 cut(s)	94, 138, 219, 509
FaqI	GGGAC	2 cut(s)	115, 280
FauI	CCCGC	1 cut(s)	361
FbaI	TGATCA	1 cut(s)	214
Fnu4HI	GCNGC	5 cut(s)	126, 147, 289, 374, 480
FokI	GGATG	3 cut(s)	57, 503, 512
FriOI	GRGCYC	1 cut(s)	50
Fsp4HI	GCNGC	5 cut(s)	126, 147, 289, 374, 480
FspBI	CTAG	1 cut(s)	447
GluI	GCNGC	5 cut(s)	126, 147, 289, 374, 480
GsaI	CCCAGC	2 cut(s)	413, 439
HaeIII	GGCC	2 cut(s)	373, 414
HinfI	GANTC	3 cut(s)	64, 351, 383
Hpy188I	TCNGA	3 cut(s)	61, 382, 555
HpyAV	CCTTC	2 cut(s)	81, 315
HpyCH4V	TGCA	4 cut(s)	291, 427, 530, 535
HpyF10VI	GCNNNNNNNGC	5 cut(s)	45, 122, 131, 257, 288
HpyF3I	CTNAG	5 cut(s)	60, 247, 266, 320, 333
Ksp22I	TGATCA	1 cut(s)	214
Kzo9I	GATC	1 cut(s)	214
LmnI	GCTCC	1 cut(s)	53
Lsp1109I	GCAGC	4 cut(s)	137, 158, 275, 491
MaeI	CTAG	1 cut(s)	447
MalI	GATC	1 cut(s)	216
MboI	GATC	1 cut(s)	214
MboII	GAAGA	5 cut(s)	131, 222, 231, 234, 430
MhlI	GDGCHC	1 cut(s)	50
MluCI	AATT	2 cut(s)	337, 562
MlyI	GAGTC	1 cut(s)	360
MspA1I	CMGCKG	1 cut(s)	116
MspR9I	CCNGG	1 cut(s)	52
MvaI	CCWGG	1 cut(s)	52
MwoI	GCNNNNNNNGC	5 cut(s)	45, 122, 131, 257, 288
NdeII	GATC	1 cut(s)	214
NlaIV	GGNNCC	2 cut(s)	49, 372
NspV	TTCGAA	1 cut(s)	386
PfeI	GAWTC	2 cut(s)	64, 383
PkrI	GCNGC	5 cut(s)	127, 148, 290, 375, 481
PleI	GAGTC	1 cut(s)	359
PpsI	GAGTC	1 cut(s)	359
Psp6I	CCWGG	1 cut(s)	50
PspFI	CCCAGC	2 cut(s)	409, 435
PspGI	CCWGG	1 cut(s)	50
PspN4I	GGNNCC	2 cut(s)	49, 372
PspPI	GGNCC	2 cut(s)	371, 412
PvuII	CAGCTG	1 cut(s)	116
RsaI	GTAC	1 cut(s)	6
RsaNI	GTAC	1 cut(s)	5
SatI	GCNGC	5 cut(s)	126, 147, 289, 374, 480
Sau3AI	GATC	1 cut(s)	214
Sau96I	GGNCC	2 cut(s)	371, 412
SchI	GAGTC	1 cut(s)	360
ScrFI	CCNGG	1 cut(s)	52
SduI	GDGCHC	1 cut(s)	50
SetI	ASST	5 cut(s)	118, 136, 151, 411, 455
SfuI	TTCGAA	1 cut(s)	386
Sse9I	AATT	2 cut(s)	337, 562
SsiI	CCGC	2 cut(s)	368, 374
SspMI	CTAG	1 cut(s)	447
StyD4I	CCNGG	1 cut(s)	50
TaqI	TCGA	2 cut(s)	166, 386
TasI	AATT	2 cut(s)	337, 562
TauI	GCSGC	1 cut(s)	376
TfiI	GAWTC	2 cut(s)	64, 383
TscAI	CASTG	2 cut(s)	47, 274
TseI	GCWGC	4 cut(s)	125, 146, 288, 479
TspDTI	ATGAA	3 cut(s)	216, 222, 524
TspRI	CASTG	2 cut(s)	47, 274
XapI	RAATTY	1 cut(s)	337
XspI	CTAG	1 cut(s)	447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.