Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0003109

Physical Location & Seq

Genomic Coordinates Reverse (-)

1789592 .. 1790514

Gene Structure 923 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g03190.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGTACAGTCAACGAAGAAGTATAGAGGTGTGCGGCAGCGGAATTGGGGCTCTTGGGTCTCCGAAATCCGTCATCCATTACTGAAGAGAAGGGTGTGGCTAGGTACATTTGACAGTGCTGAAGAGGCGGCACGAGCATATGATGCAGCTGCCATTTTGATGAGTGGCCGAAATGCCAAAACAAATTTCCCAGTAACTACTACTCAAACTAGTACTGATGATACGAAAACTAGTACTTGTAGCGAAGATTCTTCGTCAAGAGCAGATGGTTTATCAGAAATCTTACGCGCAAAGCTGATGAAATGTAGCAATGTACTGTCTCCATCCATGACGTGCTTGAGGCTGGACAACGAGAGCTCCCACATCGGAATCTGGCAGAAGCGTGCAGGTCAAAGATCGGATCATTCAAATTGGGTCATGACTGTCCAACTTGGAAAGACGAATATCAAACCTGATGATGGTACCGACAACCAGCAGAGTATTTCATCACCTCCTTCAGAGTCTCCAGCATCATCACCATTGGAGAGGCCTAAGCTAATAGCAGATGCTTATGAAATGAATGAAGAGGAGAAATTATCATTGCAGATGATAGAGGAGCTGCTTCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

203

Amino Acids

22.61

Weight (kDa)

7.71

Isoelectric Point (pI)

69.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	7 - 54	2.8e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15360 AT1G15360
fragaria_vesca	FvH4_1g03190 FvH4_6g29930
malus_domestica	MD02G1030900.v1.1 MD15G1172600.v1.1 MD17G1209000.v1.1
prunus_persica	Prupe.3G084600_v2.0.a1 Prupe.7G243600_v2.0.a1
pyrus_communis	pycom15g15430
rosa_chinensis	RchiOBHm_Chr2g0088321 RchiOBHm_Chr2g0135921 RchiOBHm_Chr7g0230931
rosa_laevigata	RLG00000015943 RLG00000019490
rosa_multiflora	Rmu_sc0000483.1_g000022 Rmu_sc0004235.1_g000029 Rmu_sc0004243.1_g000002
rosa_roxburghii	Rroxscaffold_2G00108770 Rroxscaffold_2G00152750 Rroxscaffold_3G00229670
rosa_rugosa	Rorug01G0482900 Rorug02G0326900 Rorug07G0263300 Rorug07G0263400
rosa_samantha	Rh2AG378500 Rh2BG037200 Rh2BG385100 Rh2CG038300 Rh2CG364200 Rh2DG401400 Rh7AG416500 Rh7CG435700 Rh7DG410800
rosa_wichuraiana	Rw2G003000 Rw2G030840 Rw7G034490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	377
Acc65I	GGTACC	1 cut(s)	461
AccB1I	GGYRCC	1 cut(s)	461
AccII	CGCG	1 cut(s)	288
AciI	CCGC	3 cut(s)	34, 40, 128
AclWI	GGATC	1 cut(s)	408
AcoI	YGGCCR	1 cut(s)	166
AcsI	RAATTY	1 cut(s)	184
AcuI	CTGAAG	3 cut(s)	104, 141, 480
AfaI	GTAC	6 cut(s)	6, 106, 214, 235, 315, 463
AfiI	CCNNNNNNNGG	1 cut(s)	458
AgsI	TTSAA	1 cut(s)	408
AhlI	ACTAGT	2 cut(s)	209, 230
AjiI	CACGTC	1 cut(s)	333
AjuI	GAANNNNNNNTTGG	2 cut(s)	170, 202
AluBI	AGCT	5 cut(s)	149, 295, 357, 535, 598
AluI	AGCT	5 cut(s)	149, 295, 357, 535, 598
Alw21I	GWGCWC	1 cut(s)	359
Alw26I	GTCTC	3 cut(s)	64, 324, 507
AlwI	GGATC	1 cut(s)	408
AoxI	GGCC	2 cut(s)	166, 527
ApeKI	GCWGC	4 cut(s)	37, 146, 149, 598
ApoI	RAATTY	1 cut(s)	184
Asp718I	GGTACC	1 cut(s)	461
AspLEI	GCGC	1 cut(s)	290
AsuHPI	GGTGA	2 cut(s)	480, 507
BanI	GGYRCC	1 cut(s)	461
BanII	GRGCYC	2 cut(s)	53, 359
BauI	CACGAG	1 cut(s)	132
Bbv12I	GWGCWC	1 cut(s)	359
BbvI	GCAGC	4 cut(s)	49, 136, 158, 585
BccI	CCATC	3 cut(s)	260, 331, 452
BcoDI	GTCTC	3 cut(s)	64, 324, 507
BcuI	ACTAGT	2 cut(s)	209, 230
BfaI	CTAG	3 cut(s)	101, 210, 231
BfuAI	ACCTGC	1 cut(s)	377
BisI	GCNGC	6 cut(s)	35, 38, 129, 147, 150, 599
BlsI	GCNGC	6 cut(s)	36, 39, 130, 148, 151, 600
BmcAI	AGTACT	2 cut(s)	214, 235
BmgBI	CACGTC	1 cut(s)	333
BmiI	GGNNCC	1 cut(s)	463
BmrI	ACTGGG	1 cut(s)	185
BmsI	GCATC	3 cut(s)	133, 518, 535
BmuI	ACTGGG	1 cut(s)	185
BpmI	CTGGAG	1 cut(s)	489
Bpu10I	CCTNAGC	1 cut(s)	531
BpuEI	CTTGAG	1 cut(s)	358
BsaI	GGTCTC	1 cut(s)	64
BsaXI	ACNNNNNCTCC	2 cut(s)	341, 371
Bsc4I	CCNNNNNNNGG	1 cut(s)	458
Bse1I	ACTGG	1 cut(s)	191
Bse3DI	GCAATG	2 cut(s)	316, 578
BseGI	GGATG	2 cut(s)	73, 323
BseLI	CCNNNNNNNGG	1 cut(s)	458
BseMI	GCAATG	2 cut(s)	316, 578
BseNI	ACTGG	1 cut(s)	191
BseRI	GAGGAG	2 cut(s)	581, 608
BseXI	GCAGC	4 cut(s)	49, 136, 158, 585
BsgI	GTGCAG	1 cut(s)	405
Bsh1236I	CGCG	1 cut(s)	288
BshFI	GGCC	2 cut(s)	168, 529
BshNI	GGYRCC	1 cut(s)	461
BsiHKAI	GWGCWC	1 cut(s)	359
BslI	CCNNNNNNNGG	1 cut(s)	458
BsmAI	GTCTC	3 cut(s)	64, 324, 507
BsnI	GGCC	2 cut(s)	168, 529
Bso31I	GGTCTC	1 cut(s)	64
Bsp1286I	GDGCHC	2 cut(s)	53, 359
Bsp143I	GATC	2 cut(s)	395, 400
BspACI	CCGC	3 cut(s)	34, 40, 128
BspANI	GGCC	2 cut(s)	168, 529
BspFNI	CGCG	1 cut(s)	288
BspHI	TCATGA	1 cut(s)	417
BspLI	GGNNCC	1 cut(s)	463
BspMI	ACCTGC	1 cut(s)	377
BspPI	GGATC	1 cut(s)	408
BspT107I	GGYRCC	1 cut(s)	461
BspTNI	GGTCTC	1 cut(s)	64
BsrDI	GCAATG	2 cut(s)	316, 578
BsrI	ACTGG	1 cut(s)	191
BssMI	GATC	2 cut(s)	395, 400
BssSI	CACGAG	1 cut(s)	132
Bst2BI	CACGAG	1 cut(s)	132
Bst4CI	ACNGT	4 cut(s)	9, 116, 318, 424
Bst6I	CTCTTC	3 cut(s)	80, 117, 558
BstAPI	GCANNNNNTGC	1 cut(s)	143
BstC8I	GCNNGC	1 cut(s)	384
BstDEI	CTNAG	1 cut(s)	531
BstF5I	GGATG	2 cut(s)	73, 323
BstFNI	CGCG	1 cut(s)	288
BstHHI	GCGC	1 cut(s)	290
BstKTI	GATC	2 cut(s)	398, 403
BstMAI	GTCTC	3 cut(s)	64, 324, 507
BstMBI	GATC	2 cut(s)	395, 400
BstMWI	GCNNNNNNNGC	3 cut(s)	125, 134, 143
BstUI	CGCG	1 cut(s)	288
BstV1I	GCAGC	4 cut(s)	49, 136, 158, 585
BsuRI	GGCC	2 cut(s)	168, 529
BtrI	CACGTC	1 cut(s)	333
BtsCI	GGATG	2 cut(s)	73, 323
BtsIMutI	CAGTG	1 cut(s)	121
BveI	ACCTGC	1 cut(s)	377
Cac8I	GCNNGC	1 cut(s)	384
CciI	TCATGA	1 cut(s)	417
CfoI	GCGC	1 cut(s)	290
Csp6I	GTAC	6 cut(s)	5, 105, 213, 234, 314, 462
CviAII	CATG	2 cut(s)	328, 418
CviQI	GTAC	6 cut(s)	5, 105, 213, 234, 314, 462
DdeI	CTNAG	1 cut(s)	531
DpnI	GATC	2 cut(s)	397, 402
DpnII	GATC	2 cut(s)	395, 400
EaeI	YGGCCR	1 cut(s)	166
Eam1104I	CTCTTC	3 cut(s)	80, 117, 558
EarI	CTCTTC	3 cut(s)	80, 117, 558
Ecl136II	GAGCTC	1 cut(s)	357
Eco147I	AGGCCT	1 cut(s)	529
Eco24I	GRGCYC	2 cut(s)	53, 359
Eco31I	GGTCTC	1 cut(s)	64
Eco53kI	GAGCTC	1 cut(s)	357
Eco57I	CTGAAG	3 cut(s)	104, 141, 480
EcoICRI	GAGCTC	1 cut(s)	357
EcoT38I	GRGCYC	2 cut(s)	53, 359
FaeI	CATG	2 cut(s)	331, 421
FaiI	YATR	6 cut(s)	24, 139, 141, 329, 419, 552
FatI	CATG	2 cut(s)	327, 417
FauNDI	CATATG	1 cut(s)	139
Fnu4HI	GCNGC	6 cut(s)	35, 38, 129, 147, 150, 599
FokI	GGATG	2 cut(s)	60, 310
FriOI	GRGCYC	2 cut(s)	53, 359
Fsp4HI	GCNGC	6 cut(s)	35, 38, 129, 147, 150, 599
FspBI	CTAG	3 cut(s)	101, 210, 231
GlaI	GCGC	1 cut(s)	289
GluI	GCNGC	6 cut(s)	35, 38, 129, 147, 150, 599
GsuI	CTGGAG	1 cut(s)	489
HaeIII	GGCC	2 cut(s)	168, 529
HhaI	GCGC	1 cut(s)	290
Hin1II	CATG	2 cut(s)	331, 421
Hin6I	GCGC	1 cut(s)	288
HinP1I	GCGC	1 cut(s)	288
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HinfI	GANTC	3 cut(s)	248, 369, 500
HphI	GGTGA	2 cut(s)	480, 507
Hpy166II	GTNNAC	1 cut(s)	12
Hpy188I	TCNGA	5 cut(s)	64, 277, 368, 400, 499
Hpy188III	TCNNGA	2 cut(s)	258, 418
Hpy8I	GTNNAC	1 cut(s)	12
HpyAV	CCTTC	2 cut(s)	84, 504
HpyCH4III	ACNGT	4 cut(s)	9, 116, 318, 424
HpyCH4IV	ACGT	1 cut(s)	332
HpyCH4V	TGCA	3 cut(s)	146, 386, 583
HpyF10VI	GCNNNNNNNGC	3 cut(s)	125, 134, 143
HpyF3I	CTNAG	1 cut(s)	531
HpySE526I	ACGT	1 cut(s)	332
Hsp92II	CATG	2 cut(s)	331, 421
HspAI	GCGC	1 cut(s)	288
KpnI	GGTACC	1 cut(s)	465
Kzo9I	GATC	2 cut(s)	395, 400
LmnI	GCTCC	2 cut(s)	362, 595
LpnPI	CCDG	7 cut(s)	204, 329, 358, 372, 465, 485, 519
Lsp1109I	GCAGC	4 cut(s)	49, 136, 158, 585
LweI	GCATC	3 cut(s)	133, 518, 535
MaeI	CTAG	3 cut(s)	101, 210, 231
MaeII	ACGT	1 cut(s)	332
MaeIII	GTNAC	1 cut(s)	193
MalI	GATC	2 cut(s)	397, 402
MboI	GATC	2 cut(s)	395, 400
MboII	GAAGA	6 cut(s)	28, 97, 134, 243, 257, 575
MhlI	GDGCHC	2 cut(s)	53, 359
MluCI	AATT	4 cut(s)	43, 184, 409, 572
MlyI	GAGTC	1 cut(s)	509
MmeI	TCCRAC	1 cut(s)	451
MnlI	CCTC	7 cut(s)	20, 118, 333, 501, 519, 559, 586
MseI	TTAA	1 cut(s)	607
MslI	CAYNNNNRTG	1 cut(s)	158
MspA1I	CMGCKG	2 cut(s)	40, 149
MvnI	CGCG	1 cut(s)	288
MwoI	GCNNNNNNNGC	3 cut(s)	125, 134, 143
NdeI	CATATG	1 cut(s)	139
NdeII	GATC	2 cut(s)	395, 400
NlaIII	CATG	2 cut(s)	331, 421
NlaIV	GGNNCC	1 cut(s)	463
PagI	TCATGA	1 cut(s)	417
PceI	AGGCCT	1 cut(s)	529
PfeI	GAWTC	2 cut(s)	248, 369
PkrI	GCNGC	6 cut(s)	36, 39, 130, 148, 151, 600
PleI	GAGTC	1 cut(s)	508
PpsI	GAGTC	1 cut(s)	508
Psp124BI	GAGCTC	1 cut(s)	359
PspN4I	GGNNCC	1 cut(s)	463
PvuII	CAGCTG	1 cut(s)	149
RsaI	GTAC	6 cut(s)	6, 106, 214, 235, 315, 463
RsaNI	GTAC	6 cut(s)	5, 105, 213, 234, 314, 462
RseI	CAYNNNNRTG	1 cut(s)	158
SacI	GAGCTC	1 cut(s)	359
SaqAI	TTAA	1 cut(s)	607
SatI	GCNGC	6 cut(s)	35, 38, 129, 147, 150, 599
Sau3AI	GATC	2 cut(s)	395, 400
ScaI	AGTACT	2 cut(s)	214, 235
SchI	GAGTC	1 cut(s)	509
SduI	GDGCHC	2 cut(s)	53, 359
SfaNI	GCATC	3 cut(s)	133, 518, 535
SmiMI	CAYNNNNRTG	1 cut(s)	158
SmlI	CTYRAG	1 cut(s)	337
SmoI	CTYRAG	1 cut(s)	337
SpeI	ACTAGT	2 cut(s)	209, 230
Sse9I	AATT	4 cut(s)	43, 184, 409, 572
SseBI	AGGCCT	1 cut(s)	529
SsiI	CCGC	3 cut(s)	34, 40, 128
SspMI	CTAG	3 cut(s)	101, 210, 231
SstI	GAGCTC	1 cut(s)	359
StuI	AGGCCT	1 cut(s)	529
TaaI	ACNGT	4 cut(s)	9, 116, 318, 424
TaiI	ACGT	1 cut(s)	335
TasI	AATT	4 cut(s)	43, 184, 409, 572
TatI	WGTACW	3 cut(s)	212, 233, 313
TauI	GCSGC	2 cut(s)	37, 131
TfiI	GAWTC	2 cut(s)	248, 369
Tru1I	TTAA	1 cut(s)	607
Tru9I	TTAA	1 cut(s)	607
TscAI	CASTG	1 cut(s)	121
TseI	GCWGC	4 cut(s)	37, 146, 149, 598
TspDTI	ATGAA	5 cut(s)	314, 474, 567, 572, 576
TspGWI	ACGGA	1 cut(s)	59
TspRI	CASTG	1 cut(s)	121
XapI	RAATTY	1 cut(s)	184
XspI	CTAG	3 cut(s)	101, 210, 231
ZrmI	AGTACT	2 cut(s)	214, 235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.