Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003109

Physical Location & Seq

Genomic Coordinates Forward (+)

58501874 .. 58503454

Gene Structure 1581 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG401400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGAGCGGTCGAAATGCCAAAACAAACTTTCCAGTCACTACAAATGAAATTGCAGCTGCTAGTAAGGATCCTATCAACAAGAGCAACTCCAGTAGTCCTTCTTCACTTTCTGCAGTCCTCAGCGCCAAGCTTCGCAAGTGTTGCAAGTCTCCCTCTCCTTCCCTCACTTGCCTCAGGCTCGACACTGAGAATTCTCATATTGGCGTTTGGCAAAAGCGTGCCGGGCCACGTTCAGATTCGAATTGGTTGATGATGGTGGAACTGGGACAGAAGAGTGATTTAAAAGAGGAGAAGGAGGAGGGTACTAGCGCCCCTGAATTGCCCAATGGACACGAAACGGAAGGAGTACACGGTGGGGATGATAGATTGCACGAGGAGGAAAGGATTGCATTGCAGATGATAGAGGAACTTCTCAATAGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010143 GO:0010166 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043170 GO:0043565 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901568 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

141

Amino Acids

15.46

Weight (kDa)

5.82

Isoelectric Point (pI)

67.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15360 AT1G15360
fragaria_vesca	FvH4_1g03190 FvH4_6g29930
malus_domestica	MD02G1030900.v1.1 MD15G1172600.v1.1 MD17G1209000.v1.1
prunus_persica	Prupe.3G084600_v2.0.a1 Prupe.7G243600_v2.0.a1
pyrus_communis	pycom15g15430
rosa_chinensis	RchiOBHm_Chr2g0088321 RchiOBHm_Chr2g0135921 RchiOBHm_Chr7g0230931
rosa_laevigata	RLG00000015943 RLG00000019490
rosa_multiflora	Rmu_sc0000483.1_g000022 Rmu_sc0004235.1_g000029 Rmu_sc0004243.1_g000002
rosa_roxburghii	Rroxscaffold_2G00108770 Rroxscaffold_2G00152750 Rroxscaffold_3G00229670
rosa_rugosa	Rorug01G0482900 Rorug02G0326900 Rorug07G0263300 Rorug07G0263400
rosa_samantha	Rh2AG378500 Rh2BG037200 Rh2BG385100 Rh2CG038300 Rh2CG364200 Rh2DG401400 Rh7AG416500 Rh7CG435700 Rh7DG410800
rosa_wichuraiana	Rw2G003000 Rw2G030840 Rw7G034490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	6
AciI	CCGC	1 cut(s)	6
AclWI	GGATC	2 cut(s)	62, 75
AcsI	RAATTY	1 cut(s)	190
AfaI	GTAC	2 cut(s)	304, 348
AluBI	AGCT	2 cut(s)	56, 130
AluI	AGCT	2 cut(s)	56, 130
Alw26I	GTCTC	1 cut(s)	153
AlwI	GGATC	2 cut(s)	62, 75
AoxI	GGCC	1 cut(s)	224
ApeKI	GCWGC	2 cut(s)	53, 56
ApoI	RAATTY	1 cut(s)	190
AspLEI	GCGC	2 cut(s)	125, 311
AspS9I	GGNCC	1 cut(s)	224
AsuC2I	CCSGG	1 cut(s)	223
AsuII	TTCGAA	1 cut(s)	239
AxyI	CCTNAGG	1 cut(s)	173
BamHI	GGATCC	1 cut(s)	67
BarI	GAAGNNNNNNTAC	2 cut(s)	85, 117
BauI	CACGAG	1 cut(s)	371
BbvCI	CCTCAGC	1 cut(s)	119
BbvI	GCAGC	2 cut(s)	43, 65
BccI	CCATC	1 cut(s)	247
BcnI	CCSGG	1 cut(s)	223
BcoDI	GTCTC	1 cut(s)	153
BfaI	CTAG	2 cut(s)	60, 306
BfmI	CTRYAG	1 cut(s)	111
BfoI	RGCGCY	2 cut(s)	126, 312
BisI	GCNGC	2 cut(s)	54, 57
BlsI	GCNGC	2 cut(s)	55, 58
Bme1390I	CCNGG	1 cut(s)	223
BmgT120I	GGNCC	1 cut(s)	224
BmiI	GGNNCC	1 cut(s)	69
BmrFI	CCNGG	1 cut(s)	223
BmrI	ACTGGG	1 cut(s)	272
BmuI	ACTGGG	1 cut(s)	272
BpmI	CTGGAG	1 cut(s)	73
Bpu10I	CCTNAGC	1 cut(s)	119
Bpu14I	TTCGAA	1 cut(s)	239
BpuMI	CCSGG	1 cut(s)	223
Bse1I	ACTGG	3 cut(s)	32, 90, 267
Bse21I	CCTNAGG	1 cut(s)	173
Bse3DI	GCAATG	1 cut(s)	389
BseGI	GGATG	1 cut(s)	364
BseMI	GCAATG	1 cut(s)	389
BseMII	CTCAG	3 cut(s)	133, 177, 187
BseNI	ACTGG	3 cut(s)	32, 90, 267
BseRI	GAGGAG	3 cut(s)	302, 311, 389
BseXI	GCAGC	2 cut(s)	43, 65
Bsh1285I	CGRYCG	1 cut(s)	10
BshFI	GGCC	1 cut(s)	226
BsiEI	CGRYCG	1 cut(s)	10
BsiSI	CCGG	1 cut(s)	222
BslFI	GGGAC	1 cut(s)	279
BsmAI	GTCTC	1 cut(s)	153
BsmFI	GGGAC	1 cut(s)	279
BsnI	GGCC	1 cut(s)	226
Bsp119I	TTCGAA	1 cut(s)	239
Bsp143I	GATC	1 cut(s)	67
BspACI	CCGC	1 cut(s)	6
BspANI	GGCC	1 cut(s)	226
BspCNI	CTCAG	3 cut(s)	132, 178, 186
BspLI	GGNNCC	1 cut(s)	69
BspMAI	CTGCAG	1 cut(s)	115
BspPI	GGATC	2 cut(s)	62, 75
BspT104I	TTCGAA	1 cut(s)	239
BsrBI	CCGCTC	1 cut(s)	6
BsrDI	GCAATG	1 cut(s)	389
BsrI	ACTGG	3 cut(s)	32, 90, 267
BssMI	GATC	1 cut(s)	67
BssSI	CACGAG	1 cut(s)	371
Bst2BI	CACGAG	1 cut(s)	371
Bst4CI	ACNGT	1 cut(s)	353
Bst6I	CTCTTC	1 cut(s)	266
BstAPI	GCANNNNNTGC	1 cut(s)	141
BstBI	TTCGAA	1 cut(s)	239
BstC8I	GCNNGC	1 cut(s)	219
BstDEI	CTNAG	3 cut(s)	119, 173, 186
BstF5I	GGATG	1 cut(s)	364
BstH2I	RGCGCY	2 cut(s)	126, 312
BstHHI	GCGC	2 cut(s)	125, 311
BstKTI	GATC	1 cut(s)	70
BstMAI	GTCTC	1 cut(s)	153
BstMBI	GATC	1 cut(s)	67
BstMCI	CGRYCG	1 cut(s)	10
BstMWI	GCNNNNNNNGC	2 cut(s)	141, 223
BstSCI	CCNGG	1 cut(s)	221
BstSFI	CTRYAG	1 cut(s)	111
BstV1I	GCAGC	2 cut(s)	43, 65
BstX2I	RGATCY	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	67
Bsu36I	CCTNAGG	1 cut(s)	173
BsuRI	GGCC	1 cut(s)	226
BtsCI	GGATG	1 cut(s)	364
BtsIMutI	CAGTG	1 cut(s)	183
Cac8I	GCNNGC	1 cut(s)	219
CfoI	GCGC	2 cut(s)	125, 311
Cfr13I	GGNCC	1 cut(s)	224
Csp6I	GTAC	2 cut(s)	303, 347
CviJI	RGCY	4 cut(s)	56, 130, 178, 226
CviKI_1	RGCY	4 cut(s)	56, 130, 178, 226
CviQI	GTAC	2 cut(s)	303, 347
DdeI	CTNAG	3 cut(s)	119, 173, 186
DpnI	GATC	1 cut(s)	69
DpnII	GATC	1 cut(s)	67
DraI	TTTAAA	1 cut(s)	282
Eam1104I	CTCTTC	1 cut(s)	266
EarI	CTCTTC	1 cut(s)	266
Eco81I	CCTNAGG	1 cut(s)	173
EcoRI	GAATTC	1 cut(s)	190
FaiI	YATR	1 cut(s)	198
FaqI	GGGAC	1 cut(s)	279
Fnu4HI	GCNGC	2 cut(s)	54, 57
FokI	GGATG	1 cut(s)	371
Fsp4HI	GCNGC	2 cut(s)	54, 57
FspBI	CTAG	2 cut(s)	60, 306
GlaI	GCGC	2 cut(s)	124, 310
GluI	GCNGC	2 cut(s)	54, 57
GsuI	CTGGAG	1 cut(s)	73
HaeII	RGCGCY	2 cut(s)	126, 312
HaeIII	GGCC	1 cut(s)	226
HapII	CCGG	1 cut(s)	222
HhaI	GCGC	2 cut(s)	125, 311
Hin6I	GCGC	2 cut(s)	123, 309
HinP1I	GCGC	2 cut(s)	123, 309
HindIII	AAGCTT	1 cut(s)	128
HinfI	GANTC	1 cut(s)	236
HpaII	CCGG	1 cut(s)	222
Hpy166II	GTNNAC	1 cut(s)	349
Hpy188I	TCNGA	1 cut(s)	235
Hpy8I	GTNNAC	1 cut(s)	349
HpyAV	CCTTC	4 cut(s)	108, 168, 286, 335
HpyCH4III	ACNGT	1 cut(s)	353
HpyCH4IV	ACGT	1 cut(s)	229
HpyCH4V	TGCA	6 cut(s)	53, 113, 144, 370, 389, 394
HpyF10VI	GCNNNNNNNGC	2 cut(s)	141, 223
HpyF3I	CTNAG	3 cut(s)	119, 173, 186
HpySE526I	ACGT	1 cut(s)	229
HspAI	GCGC	2 cut(s)	123, 309
Kzo9I	GATC	1 cut(s)	67
LpnPI	CCDG	6 cut(s)	45, 103, 160, 235, 248, 327
Lsp1109I	GCAGC	2 cut(s)	43, 65
MaeI	CTAG	2 cut(s)	60, 306
MaeII	ACGT	1 cut(s)	229
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	1 cut(s)	69
MbiI	CCGCTC	1 cut(s)	6
MboI	GATC	1 cut(s)	67
MboII	GAAGA	2 cut(s)	93, 283
MflI	RGATCY	1 cut(s)	67
MluCI	AATT	5 cut(s)	48, 190, 241, 317, 421
MseI	TTAA	2 cut(s)	281, 424
MspA1I	CMGCKG	1 cut(s)	56
MspI	CCGG	1 cut(s)	222
MspR9I	CCNGG	1 cut(s)	223
MwoI	GCNNNNNNNGC	2 cut(s)	141, 223
NciI	CCSGG	1 cut(s)	223
NdeII	GATC	1 cut(s)	67
NlaIV	GGNNCC	1 cut(s)	69
NmuCI	GTSAC	1 cut(s)	34
NspV	TTCGAA	1 cut(s)	239
PfeI	GAWTC	1 cut(s)	236
PkrI	GCNGC	2 cut(s)	55, 58
PspN4I	GGNNCC	1 cut(s)	69
PspPI	GGNCC	1 cut(s)	224
PstI	CTGCAG	1 cut(s)	115
PsuI	RGATCY	1 cut(s)	67
PvuII	CAGCTG	1 cut(s)	56
RsaI	GTAC	2 cut(s)	304, 348
RsaNI	GTAC	2 cut(s)	303, 347
SaqAI	TTAA	2 cut(s)	281, 424
SatI	GCNGC	2 cut(s)	54, 57
Sau3AI	GATC	1 cut(s)	67
Sau96I	GGNCC	1 cut(s)	224
ScrFI	CCNGG	1 cut(s)	223
SetI	ASST	3 cut(s)	58, 132, 232
SfcI	CTRYAG	1 cut(s)	111
SfuI	TTCGAA	1 cut(s)	239
Sse9I	AATT	5 cut(s)	48, 190, 241, 317, 421
SsiI	CCGC	1 cut(s)	6
SspMI	CTAG	2 cut(s)	60, 306
StyD4I	CCNGG	1 cut(s)	221
TaaI	ACNGT	1 cut(s)	353
TaiI	ACGT	1 cut(s)	232
TaqI	TCGA	3 cut(s)	10, 180, 239
TasI	AATT	5 cut(s)	48, 190, 241, 317, 421
TatI	WGTACW	1 cut(s)	346
TfiI	GAWTC	1 cut(s)	236
Tru1I	TTAA	2 cut(s)	281, 424
Tru9I	TTAA	2 cut(s)	281, 424
TscAI	CASTG	1 cut(s)	190
TseFI	GTSAC	1 cut(s)	34
TseI	GCWGC	2 cut(s)	53, 56
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	1 cut(s)	60
TspGWI	ACGGA	1 cut(s)	353
TspRI	CASTG	1 cut(s)	190
XapI	RAATTY	1 cut(s)	190
XspI	CTAG	2 cut(s)	60, 306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.