Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000483.1

Orthogroup ID

OG0003109

Physical Location & Seq

Genomic Coordinates Forward (+)

96338 .. 96811

Gene Structure 474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000483.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

atgtggcttgggacatttgagaatgcagaagaggcagcacgagcctacgacgaggctgcgattctgatgagtggtcgaaatgccaaaacaaactttccggtcaccacaaatgaaattgcagctgctaataataagaactctattaacaacaagagcaactccagcagtactactactacttcaccttctgcaaccctcagcgccaagcttcgcaagtgttgctctgcttccctcacttgcctcaggctcgacaccgagaattcccacatcggagtttggcaaaagcgcgctgggccacgctcagattcgaattggctgatgatggtggagctgggacggaagagtggtttagaagcggagaaggtggagagtactatcgtccctcaagtgtccgatggacatgaaacgcaaggattgaacgaggagaaaaggattgcattgcagatgatagaggaacttctgagtagaaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010143 GO:0010166 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043170 GO:0043565 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901568 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

157

Amino Acids

17.18

Weight (kDa)

6.15

Isoelectric Point (pI)

55.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15360 AT1G15360
fragaria_vesca	FvH4_1g03190 FvH4_6g29930
malus_domestica	MD02G1030900.v1.1 MD15G1172600.v1.1 MD17G1209000.v1.1
prunus_persica	Prupe.3G084600_v2.0.a1 Prupe.7G243600_v2.0.a1
pyrus_communis	pycom15g15430
rosa_chinensis	RchiOBHm_Chr2g0088321 RchiOBHm_Chr2g0135921 RchiOBHm_Chr7g0230931
rosa_laevigata	RLG00000015943 RLG00000019490
rosa_multiflora	Rmu_sc0000483.1_g000022 Rmu_sc0004235.1_g000029 Rmu_sc0004243.1_g000002
rosa_roxburghii	Rroxscaffold_2G00108770 Rroxscaffold_2G00152750 Rroxscaffold_3G00229670
rosa_rugosa	Rorug01G0482900 Rorug02G0326900 Rorug07G0263300 Rorug07G0263400
rosa_samantha	Rh2AG378500 Rh2BG037200 Rh2BG385100 Rh2CG038300 Rh2CG364200 Rh2DG401400 Rh7AG416500 Rh7CG435700 Rh7DG410800
rosa_wichuraiana	Rw2G003000 Rw2G030840 Rw7G034490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	288
AciI	CCGC	1 cut(s)	356
AcsI	RAATTY	1 cut(s)	259
AfaI	GTAC	2 cut(s)	169, 373
AgsI	TTSAA	1 cut(s)	418
AluBI	AGCT	3 cut(s)	122, 208, 331
AluI	AGCT	3 cut(s)	122, 208, 331
AoxI	GGCC	1 cut(s)	293
ApeKI	GCWGC	4 cut(s)	35, 56, 119, 122
ApoI	RAATTY	1 cut(s)	259
AspLEI	GCGC	3 cut(s)	203, 288, 290
AspS9I	GGNCC	1 cut(s)	293
AsuHPI	GGTGA	2 cut(s)	94, 174
AsuII	TTCGAA	1 cut(s)	308
AxyI	CCTNAGG	1 cut(s)	242
BauI	CACGAG	1 cut(s)	39
BbvCI	CCTCAGC	1 cut(s)	197
BbvI	GCAGC	4 cut(s)	43, 47, 109, 131
BccI	CCATC	2 cut(s)	316, 389
BcgI	CGANNNNNNTGC	2 cut(s)	38, 72
BfoI	RGCGCY	1 cut(s)	204
BisI	GCNGC	4 cut(s)	36, 57, 120, 123
BlsI	GCNGC	4 cut(s)	37, 58, 121, 124
BmcAI	AGTACT	2 cut(s)	169, 373
BmgT120I	GGNCC	1 cut(s)	293
BpmI	CTGGAG	1 cut(s)	145
Bpu10I	CCTNAGC	1 cut(s)	197
Bpu14I	TTCGAA	1 cut(s)	308
BpuEI	CTTGAG	1 cut(s)	369
BsaWI	WCCGGW	1 cut(s)	97
Bse21I	CCTNAGG	1 cut(s)	242
Bse3DI	GCAATG	1 cut(s)	437
BseMI	GCAATG	1 cut(s)	437
BseMII	CTCAG	4 cut(s)	211, 256, 315, 452
BsePI	GCGCGC	1 cut(s)	286
BseRI	GAGGAG	1 cut(s)	437
BseXI	GCAGC	4 cut(s)	43, 47, 109, 131
BseYI	CCCAGC	2 cut(s)	290, 331
Bsh1236I	CGCG	1 cut(s)	288
BshFI	GGCC	1 cut(s)	295
BsiSI	CCGG	1 cut(s)	98
BslFI	GGGAC	3 cut(s)	25, 348, 365
BsmFI	GGGAC	3 cut(s)	25, 348, 365
BsmI	GAATGC	1 cut(s)	28
BsnI	GGCC	1 cut(s)	295
Bsp119I	TTCGAA	1 cut(s)	308
BspACI	CCGC	1 cut(s)	356
BspANI	GGCC	1 cut(s)	295
BspCNI	CTCAG	4 cut(s)	210, 255, 314, 453
BspFNI	CGCG	1 cut(s)	288
BspT104I	TTCGAA	1 cut(s)	308
BsrDI	GCAATG	1 cut(s)	437
BssHII	GCGCGC	1 cut(s)	286
BssSI	CACGAG	1 cut(s)	39
Bst2BI	CACGAG	1 cut(s)	39
Bst6I	CTCTTC	2 cut(s)	24, 335
BstAPI	GCANNNNNTGC	1 cut(s)	219
BstBI	TTCGAA	1 cut(s)	308
BstC8I	GCNNGC	1 cut(s)	288
BstDEI	CTNAG	4 cut(s)	197, 242, 301, 461
BstEII	GGTNACC	1 cut(s)	100
BstFNI	CGCG	1 cut(s)	288
BstH2I	RGCGCY	1 cut(s)	204
BstHHI	GCGC	3 cut(s)	203, 288, 290
BstMWI	GCNNNNNNNGC	5 cut(s)	32, 41, 162, 219, 292
BstPI	GGTNACC	1 cut(s)	100
BstUI	CGCG	1 cut(s)	288
BstV1I	GCAGC	4 cut(s)	43, 47, 109, 131
Bsu36I	CCTNAGG	1 cut(s)	242
BsuRI	GGCC	1 cut(s)	295
Cac8I	GCNNGC	1 cut(s)	288
CfoI	GCGC	3 cut(s)	203, 288, 290
Cfr13I	GGNCC	1 cut(s)	293
Csp6I	GTAC	2 cut(s)	168, 372
CviAII	CATG	1 cut(s)	401
CviJI	RGCY	9 cut(s)	7, 44, 56, 122, 208, 247, 295, 316, 331
CviKI_1	RGCY	9 cut(s)	7, 44, 56, 122, 208, 247, 295, 316, 331
CviQI	GTAC	2 cut(s)	168, 372
DdeI	CTNAG	4 cut(s)	197, 242, 301, 461
Eam1104I	CTCTTC	2 cut(s)	24, 335
EarI	CTCTTC	2 cut(s)	24, 335
Eco81I	CCTNAGG	1 cut(s)	242
Eco91I	GGTNACC	1 cut(s)	100
EcoO65I	GGTNACC	1 cut(s)	100
EcoRI	GAATTC	1 cut(s)	259
FaeI	CATG	1 cut(s)	404
FaiI	YATR	1 cut(s)	402
FaqI	GGGAC	3 cut(s)	25, 348, 365
FatI	CATG	1 cut(s)	400
Fnu4HI	GCNGC	4 cut(s)	36, 57, 120, 123
Fsp4HI	GCNGC	4 cut(s)	36, 57, 120, 123
GlaI	GCGC	3 cut(s)	202, 287, 289
GluI	GCNGC	4 cut(s)	36, 57, 120, 123
GsaI	CCCAGC	2 cut(s)	294, 335
GsuI	CTGGAG	1 cut(s)	145
HaeII	RGCGCY	1 cut(s)	204
HaeIII	GGCC	1 cut(s)	295
HapII	CCGG	1 cut(s)	98
HhaI	GCGC	3 cut(s)	203, 288, 290
Hin1II	CATG	1 cut(s)	404
Hin6I	GCGC	3 cut(s)	201, 286, 288
HinP1I	GCGC	3 cut(s)	201, 286, 288
HindIII	AAGCTT	1 cut(s)	206
HinfI	GANTC	2 cut(s)	61, 305
HpaII	CCGG	1 cut(s)	98
HphI	GGTGA	2 cut(s)	94, 174
Hpy188I	TCNGA	5 cut(s)	66, 272, 304, 394, 462
Hpy99I	CGWCG	1 cut(s)	53
HpyAV	CCTTC	2 cut(s)	195, 355
HpyCH4V	TGCA	5 cut(s)	26, 119, 191, 437, 442
HpyF10VI	GCNNNNNNNGC	5 cut(s)	32, 41, 162, 219, 292
HpyF3I	CTNAG	4 cut(s)	197, 242, 301, 461
Hsp92II	CATG	1 cut(s)	404
HspAI	GCGC	3 cut(s)	201, 286, 288
LmnI	GCTCC	1 cut(s)	328
LpnPI	CCDG	5 cut(s)	111, 175, 229, 276, 317
Lsp1109I	GCAGC	4 cut(s)	43, 47, 109, 131
MaeIII	GTNAC	1 cut(s)	100
MboII	GAAGA	2 cut(s)	41, 352
MluCI	AATT	4 cut(s)	114, 259, 310, 469
MnlI	CCTC	8 cut(s)	25, 46, 206, 242, 251, 393, 415, 445
MseI	TTAA	2 cut(s)	144, 472
MspA1I	CMGCKG	1 cut(s)	122
MspI	CCGG	1 cut(s)	98
Mva1269I	GAATGC	1 cut(s)	28
MvnI	CGCG	1 cut(s)	288
MwoI	GCNNNNNNNGC	5 cut(s)	32, 41, 162, 219, 292
NlaIII	CATG	1 cut(s)	404
NmuCI	GTSAC	1 cut(s)	100
NspV	TTCGAA	1 cut(s)	308
PauI	GCGCGC	1 cut(s)	286
PctI	GAATGC	1 cut(s)	28
PfeI	GAWTC	2 cut(s)	61, 305
PkrI	GCNGC	4 cut(s)	37, 58, 121, 124
PspEI	GGTNACC	1 cut(s)	100
PspFI	CCCAGC	2 cut(s)	290, 331
PspPI	GGNCC	1 cut(s)	293
PteI	GCGCGC	1 cut(s)	286
PvuII	CAGCTG	1 cut(s)	122
RsaI	GTAC	2 cut(s)	169, 373
RsaNI	GTAC	2 cut(s)	168, 372
SaqAI	TTAA	2 cut(s)	144, 472
SatI	GCNGC	4 cut(s)	36, 57, 120, 123
Sau96I	GGNCC	1 cut(s)	293
ScaI	AGTACT	2 cut(s)	169, 373
SetI	ASST	5 cut(s)	124, 187, 210, 333, 366
SfuI	TTCGAA	1 cut(s)	308
SmlI	CTYRAG	1 cut(s)	384
SmoI	CTYRAG	1 cut(s)	384
Sse9I	AATT	4 cut(s)	114, 259, 310, 469
SsiI	CCGC	1 cut(s)	356
TaqI	TCGA	3 cut(s)	76, 249, 308
TasI	AATT	4 cut(s)	114, 259, 310, 469
TatI	WGTACW	2 cut(s)	167, 371
TfiI	GAWTC	2 cut(s)	61, 305
Tru1I	TTAA	2 cut(s)	144, 472
Tru9I	TTAA	2 cut(s)	144, 472
TseFI	GTSAC	1 cut(s)	100
TseI	GCWGC	4 cut(s)	35, 56, 119, 122
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	2 cut(s)	126, 417
TspGWI	ACGGA	1 cut(s)	352
XapI	RAATTY	1 cut(s)	259
ZrmI	AGTACT	2 cut(s)	169, 373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.