Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0003109

Physical Location & Seq

Genomic Coordinates Reverse (-)

13418043 .. 13419309

Gene Structure 1267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1172600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGTGCAATCAAAGAAGTACAGAGGCGTCAGGCAGCGTCATTGGGGCTCTTGGGTCTCAGAAATCCGCCACCCAATACTGAAGAGAAGGGTGTGGCTAGGCACATTTGGGACAGCCGAAGAAGCAGCTCGAGCATACGACGAAGCTGCCGTTCTGATGAGCGGACGAAATGCCAAGACCAATTTCCCAACATCTATTACAACTCAGAGTAAGAGTACTCGTGCCACAGTAGGATCATCCGATCACCCAAAAACTAGTAGTGGTGACTTGGATTCACCATCCGGACCGAAGGGTTTGTCGGAAATATTGCATGCCAAGCTAAGGAAATGCAGCAAGATACCGTCCCCATCCATGACCTGCTTGAGGCTCGACAATGAGAGCTCTCACATTGGAGTGTGGCAAAAGCGGGCAGGTCAACGCTCTGATAACTCCAATTGGGTCATGACTATTCAGCTTGGCAAGAAGAAGAATAATAGTAATGTTGATACTAATAATGCTGATGATCACAGTGTTGTACCATCACAGCTAATGTCGAATTCAGATCAGTCGGCTTCGATTGCAACATCATCAGAGAGGGCGCCCGAACTCATGGCGGAGATTGATAAAGAAGAGAAAATTGCGTTGCAGATGATAGAAGAGCTGCTTAACAGAAATTGCCTAAGTCCTGATTTATCATTTGGCATTCATCAAGGGGAGGAAAAAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

236

Amino Acids

26.0

Weight (kDa)

9.13

Isoelectric Point (pI)

58.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	6 - 50	9.8e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15360 AT1G15360
fragaria_vesca	FvH4_1g03190 FvH4_6g29930
malus_domestica	MD02G1030900.v1.1 MD15G1172600.v1.1 MD17G1209000.v1.1
prunus_persica	Prupe.3G084600_v2.0.a1 Prupe.7G243600_v2.0.a1
pyrus_communis	pycom15g15430
rosa_chinensis	RchiOBHm_Chr2g0088321 RchiOBHm_Chr2g0135921 RchiOBHm_Chr7g0230931
rosa_laevigata	RLG00000015943 RLG00000019490
rosa_multiflora	Rmu_sc0000483.1_g000022 Rmu_sc0004235.1_g000029 Rmu_sc0004243.1_g000002
rosa_roxburghii	Rroxscaffold_2G00108770 Rroxscaffold_2G00152750 Rroxscaffold_3G00229670
rosa_rugosa	Rorug01G0482900 Rorug02G0326900 Rorug07G0263300 Rorug07G0263400
rosa_samantha	Rh2AG378500 Rh2BG037200 Rh2BG385100 Rh2CG038300 Rh2CG364200 Rh2DG401400 Rh7AG416500 Rh7CG435700 Rh7DG410800
rosa_wichuraiana	Rw2G003000 Rw2G030840 Rw7G034490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	365, 401
AccB1I	GGYRCC	1 cut(s)	577
AccBSI	CCGCTC	1 cut(s)	162
AccIII	TCCGGA	1 cut(s)	281
AciI	CCGC	4 cut(s)	67, 162, 406, 593
AclWI	GGATC	1 cut(s)	241
AcsI	RAATTY	2 cut(s)	535, 702
AcuI	CTGAAG	1 cut(s)	101
AcyI	GRCGYC	2 cut(s)	27, 578
AfaI	GTAC	3 cut(s)	20, 217, 516
AfiI	CCNNNNNNNGG	2 cut(s)	321, 363
AhlI	ACTAGT	1 cut(s)	254
AjuI	GAANNNNNNNTTGG	2 cut(s)	167, 199
AluBI	AGCT	7 cut(s)	128, 146, 319, 381, 454, 526, 640
AluI	AGCT	7 cut(s)	128, 146, 319, 381, 454, 526, 640
Alw21I	GWGCWC	1 cut(s)	383
Alw26I	GTCTC	1 cut(s)	61
AlwI	GGATC	1 cut(s)	241
Ama87I	CYCGRG	1 cut(s)	129
Aor13HI	TCCGGA	1 cut(s)	281
ApeKI	GCWGC	5 cut(s)	34, 125, 146, 330, 640
ApoI	RAATTY	2 cut(s)	535, 702
ArsI	GACNNNNNNTTYG	2 cut(s)	281, 313
AspLEI	GCGC	1 cut(s)	580
AspS9I	GGNCC	1 cut(s)	284
AsuHPI	GGTGA	3 cut(s)	236, 267, 275
AvaI	CYCGRG	1 cut(s)	129
AvaII	GGWCC	1 cut(s)	284
BanI	GGYRCC	1 cut(s)	577
BanII	GRGCYC	2 cut(s)	50, 383
BauI	CACGAG	1 cut(s)	219
Bbv12I	GWGCWC	1 cut(s)	383
BbvI	GCAGC	5 cut(s)	46, 133, 137, 342, 627
BccI	CCATC	3 cut(s)	286, 355, 526
BceAI	ACGGC	1 cut(s)	134
BcgI	CGANNNNNNTGC	2 cut(s)	128, 162
BclI	TGATCA	1 cut(s)	502
BcoDI	GTCTC	1 cut(s)	61
BcuI	ACTAGT	1 cut(s)	254
BfaI	CTAG	2 cut(s)	98, 255
BfoI	RGCGCY	1 cut(s)	581
BfuAI	ACCTGC	2 cut(s)	365, 401
BisI	GCNGC	5 cut(s)	35, 126, 147, 331, 641
BlsI	GCNGC	5 cut(s)	36, 127, 148, 332, 642
BmcAI	AGTACT	1 cut(s)	217
Bme18I	GGWCC	1 cut(s)	284
BmeT110I	CYCGRG	1 cut(s)	129
BmgT120I	GGNCC	1 cut(s)	284
BmiI	GGNNCC	1 cut(s)	579
Bpu10I	CCTNAGC	1 cut(s)	320
BpuEI	CTTGAG	1 cut(s)	382
BsaHI	GRCGYC	2 cut(s)	27, 578
BsaI	GGTCTC	1 cut(s)	61
BsaWI	WCCGGW	1 cut(s)	281
Bsc4I	CCNNNNNNNGG	2 cut(s)	321, 363
BseAI	TCCGGA	1 cut(s)	281
BseGI	GGATG	3 cut(s)	236, 278, 347
BseLI	CCNNNNNNNGG	2 cut(s)	321, 363
BseMII	CTCAG	2 cut(s)	72, 218
BseXI	GCAGC	5 cut(s)	46, 133, 137, 342, 627
BshNI	GGYRCC	1 cut(s)	577
BsiHKAI	GWGCWC	1 cut(s)	383
BsiHKCI	CYCGRG	1 cut(s)	129
BsiSI	CCGG	1 cut(s)	282
BslFI	GGGAC	2 cut(s)	124, 328
BslI	CCNNNNNNNGG	2 cut(s)	321, 363
BsmAI	GTCTC	1 cut(s)	61
BsmFI	GGGAC	2 cut(s)	124, 328
BsmI	GAATGC	1 cut(s)	681
Bso31I	GGTCTC	1 cut(s)	61
BsoBI	CYCGRG	1 cut(s)	129
Bsp1286I	GDGCHC	2 cut(s)	50, 383
Bsp13I	TCCGGA	1 cut(s)	281
Bsp143I	GATC	4 cut(s)	233, 241, 502, 541
BspACI	CCGC	4 cut(s)	67, 162, 406, 593
BspCNI	CTCAG	2 cut(s)	71, 217
BspEI	TCCGGA	1 cut(s)	281
BspHI	TCATGA	1 cut(s)	441
BspLI	GGNNCC	1 cut(s)	579
BspMI	ACCTGC	2 cut(s)	365, 401
BspPI	GGATC	1 cut(s)	241
BspQI	GCTCTTC	1 cut(s)	630
BspT107I	GGYRCC	1 cut(s)	577
BspTNI	GGTCTC	1 cut(s)	61
BsrBI	CCGCTC	1 cut(s)	162
BssMI	GATC	4 cut(s)	233, 241, 502, 541
BssNI	GRCGYC	2 cut(s)	27, 578
BssSI	CACGAG	1 cut(s)	219
Bst2BI	CACGAG	1 cut(s)	219
Bst4CI	ACNGT	3 cut(s)	229, 342, 509
Bst6I	CTCTTC	3 cut(s)	77, 603, 630
BstACI	GRCGYC	2 cut(s)	27, 578
BstC8I	GCNNGC	2 cut(s)	312, 408
BstDEI	CTNAG	4 cut(s)	58, 204, 320, 659
BstENI	CCTNNNNNAGG	1 cut(s)	361
BstF5I	GGATG	3 cut(s)	236, 278, 347
BstH2I	RGCGCY	1 cut(s)	581
BstHHI	GCGC	1 cut(s)	580
BstKTI	GATC	4 cut(s)	236, 244, 505, 544
BstMAI	GTCTC	1 cut(s)	61
BstMBI	GATC	4 cut(s)	233, 241, 502, 541
BstMWI	GCNNNNNNNGC	4 cut(s)	122, 131, 316, 557
BstNSI	RCATGY	1 cut(s)	314
BstV1I	GCAGC	5 cut(s)	46, 133, 137, 342, 627
BtsCI	GGATG	3 cut(s)	236, 278, 347
BtsIMutI	CAGTG	1 cut(s)	514
BveI	ACCTGC	2 cut(s)	365, 401
Cac8I	GCNNGC	2 cut(s)	312, 408
CciI	TCATGA	1 cut(s)	441
CfoI	GCGC	1 cut(s)	580
Cfr13I	GGNCC	1 cut(s)	284
CpoI	CGGWCCG	1 cut(s)	284
CseI	GACGC	2 cut(s)	16, 26
Csp6I	GTAC	3 cut(s)	19, 216, 515
CspI	CGGWCCG	1 cut(s)	284
CviAII	CATG	4 cut(s)	311, 352, 442, 589
CviQI	GTAC	3 cut(s)	19, 216, 515
DdeI	CTNAG	4 cut(s)	58, 204, 320, 659
DinI	GGCGCC	1 cut(s)	579
DpnI	GATC	4 cut(s)	235, 243, 504, 543
DpnII	GATC	4 cut(s)	233, 241, 502, 541
Eam1104I	CTCTTC	3 cut(s)	77, 603, 630
EarI	CTCTTC	3 cut(s)	77, 603, 630
EciI	GGCGGA	2 cut(s)	56, 608
Ecl136II	GAGCTC	1 cut(s)	381
Eco24I	GRGCYC	2 cut(s)	50, 383
Eco31I	GGTCTC	1 cut(s)	61
Eco47I	GGWCC	1 cut(s)	284
Eco53kI	GAGCTC	1 cut(s)	381
Eco57I	CTGAAG	1 cut(s)	101
Eco88I	CYCGRG	1 cut(s)	129
EcoICRI	GAGCTC	1 cut(s)	381
EcoNI	CCTNNNNNAGG	1 cut(s)	361
EcoRI	GAATTC	1 cut(s)	535
EcoT38I	GRGCYC	2 cut(s)	50, 383
EgeI	GGCGCC	1 cut(s)	579
EheI	GGCGCC	1 cut(s)	579
FaeI	CATG	4 cut(s)	314, 355, 445, 592
FaiI	YATR	5 cut(s)	136, 312, 353, 443, 590
FalI	AAGNNNNNCTT	2 cut(s)	627, 659
FaqI	GGGAC	2 cut(s)	124, 328
FatI	CATG	4 cut(s)	310, 351, 441, 588
FauI	CCCGC	1 cut(s)	399
FbaI	TGATCA	1 cut(s)	502
Fnu4HI	GCNGC	5 cut(s)	35, 126, 147, 331, 641
FokI	GGATG	3 cut(s)	223, 265, 334
FriOI	GRGCYC	2 cut(s)	50, 383
Fsp4HI	GCNGC	5 cut(s)	35, 126, 147, 331, 641
FspBI	CTAG	2 cut(s)	98, 255
GlaI	GCGC	1 cut(s)	579
GluI	GCNGC	5 cut(s)	35, 126, 147, 331, 641
HaeII	RGCGCY	1 cut(s)	581
HapII	CCGG	1 cut(s)	282
HgaI	GACGC	2 cut(s)	16, 26
HhaI	GCGC	1 cut(s)	580
Hin1I	GRCGYC	2 cut(s)	27, 578
Hin1II	CATG	4 cut(s)	314, 355, 445, 592
Hin6I	GCGC	1 cut(s)	578
HinP1I	GCGC	1 cut(s)	578
HincII	GTYRAC	1 cut(s)	416
HindII	GTYRAC	1 cut(s)	416
HinfI	GANTC	1 cut(s)	272
HpaII	CCGG	1 cut(s)	282
HphI	GGTGA	3 cut(s)	236, 267, 275
Hpy166II	GTNNAC	1 cut(s)	416
Hpy188I	TCNGA	8 cut(s)	61, 156, 207, 241, 301, 424, 541, 571
Hpy188III	TCNNGA	3 cut(s)	282, 442, 665
Hpy8I	GTNNAC	1 cut(s)	416
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	2 cut(s)	81, 283
HpyCH4III	ACNGT	3 cut(s)	229, 342, 509
HpyCH4V	TGCA	5 cut(s)	7, 310, 330, 560, 625
HpyF10VI	GCNNNNNNNGC	4 cut(s)	122, 131, 316, 557
HpyF3I	CTNAG	4 cut(s)	58, 204, 320, 659
Hsp92I	GRCGYC	2 cut(s)	27, 578
Hsp92II	CATG	4 cut(s)	314, 355, 445, 592
HspAI	GCGC	1 cut(s)	578
KasI	GGCGCC	1 cut(s)	577
Kpn2I	TCCGGA	1 cut(s)	281
Ksp22I	TGATCA	1 cut(s)	502
Kzo9I	GATC	4 cut(s)	233, 241, 502, 541
LguI	GCTCTTC	1 cut(s)	630
LpnPI	CCDG	5 cut(s)	16, 295, 370, 396, 678
Lsp1109I	GCAGC	5 cut(s)	46, 133, 137, 342, 627
MaeI	CTAG	2 cut(s)	98, 255
MaeIII	GTNAC	1 cut(s)	263
MalI	GATC	4 cut(s)	235, 243, 504, 543
MbiI	CCGCTC	1 cut(s)	162
MboI	GATC	4 cut(s)	233, 241, 502, 541
MboII	GAAGA	6 cut(s)	94, 131, 475, 478, 620, 647
MfeI	CAATTG	1 cut(s)	433
MhlI	GDGCHC	2 cut(s)	50, 383
MluCI	AATT	6 cut(s)	181, 433, 535, 615, 652, 702
Mly113I	GGCGCC	1 cut(s)	578
MmeI	TCCRAC	1 cut(s)	279
MnlI	CCTC	4 cut(s)	17, 357, 567, 688
MroI	TCCGGA	1 cut(s)	281
MseI	TTAA	1 cut(s)	645
MslI	CAYNNNNRTG	1 cut(s)	392
MspI	CCGG	1 cut(s)	282
MunI	CAATTG	1 cut(s)	433
Mva1269I	GAATGC	1 cut(s)	681
MwoI	GCNNNNNNNGC	4 cut(s)	122, 131, 316, 557
NarI	GGCGCC	1 cut(s)	578
NdeII	GATC	4 cut(s)	233, 241, 502, 541
NlaIII	CATG	4 cut(s)	314, 355, 445, 592
NlaIV	GGNNCC	1 cut(s)	579
NmuCI	GTSAC	1 cut(s)	263
NspI	RCATGY	1 cut(s)	314
PaeI	GCATGC	1 cut(s)	314
PaeR7I	CTCGAG	1 cut(s)	129
PagI	TCATGA	1 cut(s)	441
PciSI	GCTCTTC	1 cut(s)	630
PcsI	WCGNNNNNNNCGW	1 cut(s)	147
PctI	GAATGC	1 cut(s)	681
PfeI	GAWTC	1 cut(s)	272
PkrI	GCNGC	5 cut(s)	36, 127, 148, 332, 642
PluTI	GGCGCC	1 cut(s)	581
Psp124BI	GAGCTC	1 cut(s)	383
PspN4I	GGNNCC	1 cut(s)	579
PspPI	GGNCC	1 cut(s)	284
PspXI	VCTCGAGB	1 cut(s)	129
RsaI	GTAC	3 cut(s)	20, 217, 516
RsaNI	GTAC	3 cut(s)	19, 216, 515
RseI	CAYNNNNRTG	1 cut(s)	392
Rsr2I	CGGWCCG	1 cut(s)	284
RsrII	CGGWCCG	1 cut(s)	284
SacI	GAGCTC	1 cut(s)	383
SapI	GCTCTTC	1 cut(s)	630
SaqAI	TTAA	1 cut(s)	645
SatI	GCNGC	5 cut(s)	35, 126, 147, 331, 641
Sau3AI	GATC	4 cut(s)	233, 241, 502, 541
Sau96I	GGNCC	1 cut(s)	284
ScaI	AGTACT	1 cut(s)	217
SduI	GDGCHC	2 cut(s)	50, 383
SetI	ASST	9 cut(s)	130, 148, 321, 359, 383, 415, 456, 528, 642
SfoI	GGCGCC	1 cut(s)	579
Sfr274I	CTCGAG	1 cut(s)	129
SinI	GGWCC	1 cut(s)	284
SlaI	CTCGAG	1 cut(s)	129
SmiMI	CAYNNNNRTG	1 cut(s)	392
SmlI	CTYRAG	2 cut(s)	129, 361
SmoI	CTYRAG	2 cut(s)	129, 361
SpeI	ACTAGT	1 cut(s)	254
SphI	GCATGC	1 cut(s)	314
Sse9I	AATT	6 cut(s)	181, 433, 535, 615, 652, 702
SsiI	CCGC	4 cut(s)	67, 162, 406, 593
SspDI	GGCGCC	1 cut(s)	577
SspI	AATATT	1 cut(s)	306
SspMI	CTAG	2 cut(s)	98, 255
SstI	GAGCTC	1 cut(s)	383
TaaI	ACNGT	3 cut(s)	229, 342, 509
TaqI	TCGA	4 cut(s)	130, 369, 533, 554
TaqII	GACCGA	1 cut(s)	301
TasI	AATT	6 cut(s)	181, 433, 535, 615, 652, 702
TatI	WGTACW	2 cut(s)	18, 215
TfiI	GAWTC	1 cut(s)	272
Tru1I	TTAA	1 cut(s)	645
Tru9I	TTAA	1 cut(s)	645
TscAI	CASTG	1 cut(s)	514
TseFI	GTSAC	1 cut(s)	263
TseI	GCWGC	5 cut(s)	34, 125, 146, 330, 640
Tsp45I	GTSAC	1 cut(s)	263
TspDTI	ATGAA	1 cut(s)	674
TspRI	CASTG	1 cut(s)	514
VpaK11BI	GGWCC	1 cut(s)	284
XagI	CCTNNNNNAGG	1 cut(s)	361
XapI	RAATTY	2 cut(s)	535, 702
XceI	RCATGY	1 cut(s)	314
XhoI	CTCGAG	1 cut(s)	129
XspI	CTAG	2 cut(s)	98, 255
ZrmI	AGTACT	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.