Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003109

Physical Location & Seq

Genomic Coordinates Forward (+)

5283268 .. 5284736

Gene Structure 1469 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G15360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGTACAGACGAAGAAGTTCAGAGGTGTCAGGCAACGCCATTGGGGTTCTTGGGTCGCTGAGATTCGTCATCCTCTCTTGAAACGGAGGATTTGGCTAGGGACGTTCGAGACCGCAGAGGAGGCAGCAAGAGCATACGACGAGGCCGCCGTTTTAATGAGCGGCCGCAACGCCAAAACCAACTTTCCCCTCAACAACAACAACACCGGAGAAACTTCCGAGGGCAAAACCGATATTTCAGCTTCGTCCACAATGTCATCCTCAACATCATCTTCATCGCTCTCTTCCATCCTCAGCGCCAAACTGAGGAAATGCTGCAAGTCTCCTTCCCCATCCCTCACCTGCCTCCGTCTTGACACAGCCAGCTCCCATATCGGCGTCTGGCAGAAACGGGCCGGTTCAAAGTCTGACTCCAGCTGGGTCATGACGGTGGAGCTAGGTCCCGCAAGCTCCTCCCAAGAGACTACTAGTAAAGCTTCACAAGACGCTATTCTTGCTCCGACCACTGAAGTTGAAATTGGTGGCAGCAGAGAAGAAGTATTGGATGAGGAAGAAAAGGTTGCTTTGCAAATGATAGAGGAGCTTCTCAATACAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010143 GO:0010166 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043170 GO:0043565 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901568 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

199

Amino Acids

21.7

Weight (kDa)

6.85

Isoelectric Point (pI)

66.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	6 - 50	7e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15360 AT1G15360
fragaria_vesca	FvH4_1g03190 FvH4_6g29930
malus_domestica	MD02G1030900.v1.1 MD15G1172600.v1.1 MD17G1209000.v1.1
prunus_persica	Prupe.3G084600_v2.0.a1 Prupe.7G243600_v2.0.a1
pyrus_communis	pycom15g15430
rosa_chinensis	RchiOBHm_Chr2g0088321 RchiOBHm_Chr2g0135921 RchiOBHm_Chr7g0230931
rosa_laevigata	RLG00000015943 RLG00000019490
rosa_multiflora	Rmu_sc0000483.1_g000022 Rmu_sc0004235.1_g000029 Rmu_sc0004243.1_g000002
rosa_roxburghii	Rroxscaffold_2G00108770 Rroxscaffold_2G00152750 Rroxscaffold_3G00229670
rosa_rugosa	Rorug01G0482900 Rorug02G0326900 Rorug07G0263300 Rorug07G0263400
rosa_samantha	Rh2AG378500 Rh2BG037200 Rh2BG385100 Rh2CG038300 Rh2CG364200 Rh2DG401400 Rh7AG416500 Rh7CG435700 Rh7DG410800
rosa_wichuraiana	Rw2G003000 Rw2G030840 Rw7G034490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	350
Acc36I	ACCTGC	1 cut(s)	350
AccBSI	CCGCTC	1 cut(s)	162
AciI	CCGC	5 cut(s)	114, 147, 162, 166, 444
AcoI	YGGCCR	1 cut(s)	163
AcuI	CTGAAG	1 cut(s)	528
AcyI	GRCGYC	1 cut(s)	378
AfaI	GTAC	1 cut(s)	6
AfiI	CCNNNNNNNGG	1 cut(s)	306
AgsI	TTSAA	3 cut(s)	82, 402, 515
AhlI	ACTAGT	1 cut(s)	467
AjuI	GAANNNNNNNTTGG	2 cut(s)	501, 533
AluBI	AGCT	7 cut(s)	242, 366, 417, 436, 450, 476, 583
AluI	AGCT	7 cut(s)	242, 366, 417, 436, 450, 476, 583
Alw26I	GTCTC	3 cut(s)	104, 327, 455
AoxI	GGCC	3 cut(s)	144, 163, 393
ApeKI	GCWGC	3 cut(s)	125, 315, 525
Asp700I	GAANNNNTTC	1 cut(s)	17
AspLEI	GCGC	1 cut(s)	299
AspS9I	GGNCC	2 cut(s)	393, 440
AsuHPI	GGTGA	1 cut(s)	331
AvaII	GGWCC	1 cut(s)	440
BbvCI	CCTCAGC	1 cut(s)	293
BbvI	GCAGC	3 cut(s)	137, 302, 537
BccI	CCATC	2 cut(s)	296, 340
BceAI	ACGGC	1 cut(s)	134
BcoDI	GTCTC	3 cut(s)	104, 327, 455
BcuI	ACTAGT	1 cut(s)	467
BfaI	CTAG	3 cut(s)	98, 437, 468
BfoI	RGCGCY	1 cut(s)	300
BfuAI	ACCTGC	1 cut(s)	350
BisI	GCNGC	6 cut(s)	126, 147, 163, 166, 316, 526
BlsI	GCNGC	6 cut(s)	127, 148, 164, 167, 317, 527
Bme18I	GGWCC	1 cut(s)	440
BmgT120I	GGNCC	2 cut(s)	393, 440
BmiI	GGNNCC	1 cut(s)	442
BpmI	CTGGAG	1 cut(s)	397
Bpu10I	CCTNAGC	1 cut(s)	293
BsaHI	GRCGYC	1 cut(s)	378
BsaI	GGTCTC	1 cut(s)	104
BsaJI	CCNNGG	1 cut(s)	219
BsaWI	WCCGGW	1 cut(s)	206
Bsc4I	CCNNNNNNNGG	1 cut(s)	306
Bse118I	RCCGGY	1 cut(s)	395
BseDI	CCNNGG	1 cut(s)	219
BseGI	GGATG	5 cut(s)	70, 257, 288, 332, 550
BseLI	CCNNNNNNNGG	1 cut(s)	306
BseMII	CTCAG	3 cut(s)	51, 296, 307
BseRI	GAGGAG	3 cut(s)	134, 442, 593
BseX3I	CGGCCG	1 cut(s)	163
BseXI	GCAGC	3 cut(s)	137, 302, 537
BseYI	CCCAGC	1 cut(s)	417
Bsh1285I	CGRYCG	1 cut(s)	166
BshFI	GGCC	3 cut(s)	146, 165, 395
BsiEI	CGRYCG	1 cut(s)	166
BsiSI	CCGG	2 cut(s)	207, 396
BslFI	GGGAC	2 cut(s)	115, 426
BslI	CCNNNNNNNGG	1 cut(s)	306
BsmAI	GTCTC	3 cut(s)	104, 327, 455
BsmFI	GGGAC	2 cut(s)	115, 426
BsnI	GGCC	3 cut(s)	146, 165, 395
Bso31I	GGTCTC	1 cut(s)	104
BspACI	CCGC	5 cut(s)	114, 147, 162, 166, 444
BspANI	GGCC	3 cut(s)	146, 165, 395
BspCNI	CTCAG	3 cut(s)	52, 297, 306
BspHI	TCATGA	1 cut(s)	423
BspLI	GGNNCC	1 cut(s)	442
BspMI	ACCTGC	1 cut(s)	350
BspTNI	GGTCTC	1 cut(s)	104
BsrBI	CCGCTC	1 cut(s)	162
BsrFI	RCCGGY	1 cut(s)	395
BssAI	RCCGGY	1 cut(s)	395
BssECI	CCNNGG	1 cut(s)	219
BssNI	GRCGYC	1 cut(s)	378
Bst4CI	ACNGT	1 cut(s)	430
Bst6I	CTCTTC	1 cut(s)	289
BstACI	GRCGYC	1 cut(s)	378
BstC8I	GCNNGC	2 cut(s)	364, 448
BstDEI	CTNAG	3 cut(s)	60, 293, 305
BstF5I	GGATG	5 cut(s)	70, 257, 288, 332, 550
BstH2I	RGCGCY	1 cut(s)	300
BstHHI	GCGC	1 cut(s)	299
BstMAI	GTCTC	3 cut(s)	104, 327, 455
BstMCI	CGRYCG	1 cut(s)	166
BstMWI	GCNNNNNNNGC	3 cut(s)	122, 131, 494
BstV1I	GCAGC	3 cut(s)	137, 302, 537
BstZI	CGGCCG	1 cut(s)	163
BsuRI	GGCC	3 cut(s)	146, 165, 395
BtgZI	GCGATG	1 cut(s)	261
BtsCI	GGATG	5 cut(s)	70, 257, 288, 332, 550
BtsIMutI	CAGTG	1 cut(s)	504
BveI	ACCTGC	1 cut(s)	350
Cac8I	GCNNGC	2 cut(s)	364, 448
CciI	TCATGA	1 cut(s)	423
CciNI	GCGGCCGC	1 cut(s)	163
CfoI	GCGC	1 cut(s)	299
Cfr10I	RCCGGY	1 cut(s)	395
Cfr13I	GGNCC	2 cut(s)	393, 440
CseI	GACGC	2 cut(s)	367, 494
Csp6I	GTAC	1 cut(s)	5
CspCI	CAANNNNNGTGG	2 cut(s)	493, 528
CviAII	CATG	1 cut(s)	424
CviQI	GTAC	1 cut(s)	5
DdeI	CTNAG	3 cut(s)	60, 293, 305
EaeI	YGGCCR	1 cut(s)	163
EagI	CGGCCG	1 cut(s)	163
Eam1104I	CTCTTC	1 cut(s)	289
EarI	CTCTTC	1 cut(s)	289
EclXI	CGGCCG	1 cut(s)	163
Eco31I	GGTCTC	1 cut(s)	104
Eco47I	GGWCC	1 cut(s)	440
Eco52I	CGGCCG	1 cut(s)	163
Eco57I	CTGAAG	1 cut(s)	528
EcoO109I	RGGNCCY	1 cut(s)	440
FaeI	CATG	1 cut(s)	427
FaiI	YATR	3 cut(s)	136, 372, 425
FaqI	GGGAC	2 cut(s)	115, 426
FatI	CATG	1 cut(s)	423
FauI	CCCGC	1 cut(s)	451
Fnu4HI	GCNGC	6 cut(s)	126, 147, 163, 166, 316, 526
FokI	GGATG	5 cut(s)	57, 244, 275, 319, 557
Fsp4HI	GCNGC	6 cut(s)	126, 147, 163, 166, 316, 526
FspBI	CTAG	3 cut(s)	98, 437, 468
GlaI	GCGC	1 cut(s)	298
GluI	GCNGC	6 cut(s)	126, 147, 163, 166, 316, 526
GsaI	CCCAGC	1 cut(s)	421
GsuI	CTGGAG	1 cut(s)	397
HaeII	RGCGCY	1 cut(s)	300
HaeIII	GGCC	3 cut(s)	146, 165, 395
HapII	CCGG	2 cut(s)	207, 396
HgaI	GACGC	2 cut(s)	367, 494
HhaI	GCGC	1 cut(s)	299
Hin1I	GRCGYC	1 cut(s)	378
Hin1II	CATG	1 cut(s)	427
Hin6I	GCGC	1 cut(s)	297
HinP1I	GCGC	1 cut(s)	297
HindIII	AAGCTT	1 cut(s)	474
HinfI	GANTC	2 cut(s)	64, 410
HpaII	CCGG	2 cut(s)	207, 396
HphI	GGTGA	1 cut(s)	331
Hpy166II	GTNNAC	1 cut(s)	249
Hpy188I	TCNGA	4 cut(s)	23, 220, 409, 501
Hpy188III	TCNNGA	4 cut(s)	79, 109, 353, 424
Hpy8I	GTNNAC	1 cut(s)	249
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	1 cut(s)	336
HpyCH4III	ACNGT	1 cut(s)	430
HpyCH4IV	ACGT	1 cut(s)	104
HpyCH4V	TGCA	2 cut(s)	318, 568
HpyF10VI	GCNNNNNNNGC	3 cut(s)	122, 131, 494
HpyF3I	CTNAG	3 cut(s)	60, 293, 305
HpySE526I	ACGT	1 cut(s)	104
Hsp92I	GRCGYC	1 cut(s)	378
Hsp92II	CATG	1 cut(s)	427
HspAI	GCGC	1 cut(s)	297
LmnI	GCTCC	5 cut(s)	371, 433, 455, 502, 580
LpnPI	CCDG	8 cut(s)	16, 220, 355, 367, 376, 403, 409, 427
Lsp1109I	GCAGC	3 cut(s)	137, 302, 537
MaeI	CTAG	3 cut(s)	98, 437, 468
MaeII	ACGT	1 cut(s)	104
MbiI	CCGCTC	1 cut(s)	162
MboII	GAAGA	5 cut(s)	25, 264, 276, 545, 563
MluCI	AATT	1 cut(s)	516
MlyI	GAGTC	1 cut(s)	404
MmeI	TCCRAC	1 cut(s)	524
MroXI	GAANNNNTTC	1 cut(s)	17
MseI	TTAA	1 cut(s)	155
MslI	CAYNNNNRTG	1 cut(s)	428
MspA1I	CMGCKG	1 cut(s)	417
MspI	CCGG	2 cut(s)	207, 396
MwoI	GCNNNNNNNGC	3 cut(s)	122, 131, 494
NlaIII	CATG	1 cut(s)	427
NlaIV	GGNNCC	1 cut(s)	442
NotI	GCGGCCGC	1 cut(s)	163
PagI	TCATGA	1 cut(s)	423
PaqCI	CACCTGC	1 cut(s)	350
PcsI	WCGNNNNNNNCGW	1 cut(s)	147
PdmI	GAANNNNTTC	1 cut(s)	17
PfeI	GAWTC	1 cut(s)	64
PkrI	GCNGC	6 cut(s)	127, 148, 164, 167, 317, 527
PleI	GAGTC	1 cut(s)	404
PpsI	GAGTC	1 cut(s)	404
PpuMI	RGGWCCY	1 cut(s)	440
Psp5II	RGGWCCY	1 cut(s)	440
PspFI	CCCAGC	1 cut(s)	417
PspN4I	GGNNCC	1 cut(s)	442
PspPI	GGNCC	2 cut(s)	393, 440
PspPPI	RGGWCCY	1 cut(s)	440
PvuII	CAGCTG	1 cut(s)	417
RsaI	GTAC	1 cut(s)	6
RsaNI	GTAC	1 cut(s)	5
RseI	CAYNNNNRTG	1 cut(s)	428
SaqAI	TTAA	1 cut(s)	155
SatI	GCNGC	6 cut(s)	126, 147, 163, 166, 316, 526
Sau96I	GGNCC	2 cut(s)	393, 440
SchI	GAGTC	1 cut(s)	404
SinI	GGWCC	1 cut(s)	440
SmiMI	CAYNNNNRTG	1 cut(s)	428
SpeI	ACTAGT	1 cut(s)	467
Sse9I	AATT	1 cut(s)	516
SsiI	CCGC	5 cut(s)	114, 147, 162, 166, 444
SspMI	CTAG	3 cut(s)	98, 437, 468
TaaI	ACNGT	1 cut(s)	430
TaiI	ACGT	1 cut(s)	107
TaqI	TCGA	1 cut(s)	108
TasI	AATT	1 cut(s)	516
TauI	GCSGC	3 cut(s)	149, 165, 168
TfiI	GAWTC	1 cut(s)	64
Tru1I	TTAA	1 cut(s)	155
Tru9I	TTAA	1 cut(s)	155
TscAI	CASTG	1 cut(s)	511
TseI	GCWGC	3 cut(s)	125, 315, 525
TspDTI	ATGAA	1 cut(s)	264
TspGWI	ACGGA	2 cut(s)	100, 338
TspRI	CASTG	1 cut(s)	511
VpaK11BI	GGWCC	1 cut(s)	440
XmnI	GAANNNNTTC	1 cut(s)	17
XspI	CTAG	3 cut(s)	98, 437, 468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.