Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003109

Physical Location & Seq

Genomic Coordinates Forward (+)

52714518 .. 52715406

Gene Structure 889 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019490

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGTACAATCAAAGAAGTTCAGAGGTGTCAGGCAACGCCACTGGGGCTCCTGGGTTTCTGAGATTCGTCATCCATTACTGAAAAGGAGGGTGTGGCTTGGGACATTTGAGAGTGCAGAAGAGGCAGCACGAGCCTACGACGAGGCTGCGATTCTGATGAGTGGTCGAAATGCCAAAACAAACTTTCCAGTCACTACAAATGAAATTGCAGCTGCTAGTAAGGATCCTATCAACAAGAGCAACTCCAGTAGTCCTTCTTCTTCACTTTCTGCAATCCTCAGAGCCAAGCTTCGCAAGTGTTGCAAGTCTCCCTCTCCTTCCCTCACTTGCCTCAGGCTCGACACAGAGAATTCTCATATTGGCGTTTGGCAAAAGCGCGCCGGGCCACGTTCAGATTCGAATTGGTTGATGATGGTGGAACTGGGACAGAAGAGTGATTTAAAAGAGGAGAAGGAGGAGAGTACTAGCGCCCCTGAATTGCCCAATGGACACGAAACGGAAGGAGTACACGGTGGGGATGATAGATTGCACGAGGAGGAAAGGATTGCATTGCAGATGATAGAGGAACTTCTCAATAGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010143 GO:0010166 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043170 GO:0043565 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901568 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

195

Amino Acids

21.79

Weight (kDa)

8.45

Isoelectric Point (pI)

71.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	6 - 53	3e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15360 AT1G15360
fragaria_vesca	FvH4_1g03190 FvH4_6g29930
malus_domestica	MD02G1030900.v1.1 MD15G1172600.v1.1 MD17G1209000.v1.1
prunus_persica	Prupe.3G084600_v2.0.a1 Prupe.7G243600_v2.0.a1
pyrus_communis	pycom15g15430
rosa_chinensis	RchiOBHm_Chr2g0088321 RchiOBHm_Chr2g0135921 RchiOBHm_Chr7g0230931
rosa_laevigata	RLG00000015943 RLG00000019490
rosa_multiflora	Rmu_sc0000483.1_g000022 Rmu_sc0004235.1_g000029 Rmu_sc0004243.1_g000002
rosa_roxburghii	Rroxscaffold_2G00108770 Rroxscaffold_2G00152750 Rroxscaffold_3G00229670
rosa_rugosa	Rorug01G0482900 Rorug02G0326900 Rorug07G0263300 Rorug07G0263400
rosa_samantha	Rh2AG378500 Rh2BG037200 Rh2BG385100 Rh2CG038300 Rh2CG364200 Rh2DG401400 Rh7AG416500 Rh7CG435700 Rh7DG410800
rosa_wichuraiana	Rw2G003000 Rw2G030840 Rw7G034490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	378
AclWI	GGATC	2 cut(s)	218, 231
AcsI	RAATTY	1 cut(s)	349
AfaI	GTAC	3 cut(s)	6, 463, 507
AjnI	CCWGG	1 cut(s)	50
AluBI	AGCT	2 cut(s)	212, 289
AluI	AGCT	2 cut(s)	212, 289
Alw26I	GTCTC	1 cut(s)	312
AlwI	GGATC	2 cut(s)	218, 231
AoxI	GGCC	1 cut(s)	383
ApeKI	GCWGC	4 cut(s)	125, 146, 209, 212
ApoI	RAATTY	1 cut(s)	349
AspLEI	GCGC	3 cut(s)	378, 380, 470
AspS9I	GGNCC	1 cut(s)	383
AsuC2I	CCSGG	1 cut(s)	382
AsuII	TTCGAA	1 cut(s)	398
AxyI	CCTNAGG	1 cut(s)	332
BamHI	GGATCC	1 cut(s)	223
BanII	GRGCYC	1 cut(s)	50
BarI	GAAGNNNNNNTAC	2 cut(s)	241, 273
BauI	CACGAG	2 cut(s)	129, 530
BbvI	GCAGC	4 cut(s)	133, 137, 199, 221
BccI	CCATC	1 cut(s)	406
BcgI	CGANNNNNNTGC	2 cut(s)	128, 162
BciT130I	CCWGG	1 cut(s)	52
BcnI	CCSGG	1 cut(s)	382
BcoDI	GTCTC	1 cut(s)	312
BfaI	CTAG	2 cut(s)	216, 465
BfoI	RGCGCY	1 cut(s)	471
BglI	GCCNNNNNGGC	1 cut(s)	45
BisI	GCNGC	4 cut(s)	126, 147, 210, 213
BlsI	GCNGC	4 cut(s)	127, 148, 211, 214
BmcAI	AGTACT	1 cut(s)	463
Bme1390I	CCNGG	2 cut(s)	52, 382
BmgT120I	GGNCC	1 cut(s)	383
BmiI	GGNNCC	2 cut(s)	49, 225
BmrFI	CCNGG	2 cut(s)	52, 382
BmrI	ACTGGG	2 cut(s)	52, 431
BmuI	ACTGGG	2 cut(s)	52, 431
BpmI	CTGGAG	1 cut(s)	229
Bpu14I	TTCGAA	1 cut(s)	398
BpuMI	CCSGG	1 cut(s)	382
BsaJI	CCNNGG	1 cut(s)	51
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bse1I	ACTGG	4 cut(s)	47, 188, 246, 426
Bse21I	CCTNAGG	1 cut(s)	332
Bse3DI	GCAATG	1 cut(s)	548
BseBI	CCWGG	1 cut(s)	52
BseDI	CCNNGG	1 cut(s)	51
BseGI	GGATG	2 cut(s)	70, 523
BseMI	GCAATG	1 cut(s)	548
BseMII	CTCAG	3 cut(s)	51, 292, 346
BseNI	ACTGG	4 cut(s)	47, 188, 246, 426
BsePI	GCGCGC	1 cut(s)	376
BseRI	GAGGAG	3 cut(s)	461, 470, 548
BseXI	GCAGC	4 cut(s)	133, 137, 199, 221
BsgI	GTGCAG	1 cut(s)	135
Bsh1236I	CGCG	1 cut(s)	378
BshFI	GGCC	1 cut(s)	385
BsiSI	CCGG	1 cut(s)	381
BslFI	GGGAC	2 cut(s)	115, 438
BsmAI	GTCTC	1 cut(s)	312
BsmFI	GGGAC	2 cut(s)	115, 438
BsnI	GGCC	1 cut(s)	385
Bsp119I	TTCGAA	1 cut(s)	398
Bsp1286I	GDGCHC	1 cut(s)	50
Bsp143I	GATC	1 cut(s)	223
BspANI	GGCC	1 cut(s)	385
BspCNI	CTCAG	3 cut(s)	52, 291, 345
BspFNI	CGCG	1 cut(s)	378
BspLI	GGNNCC	2 cut(s)	49, 225
BspPI	GGATC	2 cut(s)	218, 231
BspT104I	TTCGAA	1 cut(s)	398
BsrDI	GCAATG	1 cut(s)	548
BsrI	ACTGG	4 cut(s)	47, 188, 246, 426
BssECI	CCNNGG	1 cut(s)	51
BssHII	GCGCGC	1 cut(s)	376
BssMI	GATC	1 cut(s)	223
BssSI	CACGAG	2 cut(s)	129, 530
Bst2BI	CACGAG	2 cut(s)	129, 530
Bst2UI	CCWGG	1 cut(s)	52
Bst4CI	ACNGT	1 cut(s)	512
Bst6I	CTCTTC	2 cut(s)	114, 425
BstAPI	GCANNNNNTGC	1 cut(s)	300
BstBI	TTCGAA	1 cut(s)	398
BstC8I	GCNNGC	1 cut(s)	378
BstDEI	CTNAG	3 cut(s)	60, 278, 332
BstF5I	GGATG	2 cut(s)	70, 523
BstFNI	CGCG	1 cut(s)	378
BstH2I	RGCGCY	1 cut(s)	471
BstHHI	GCGC	3 cut(s)	378, 380, 470
BstKTI	GATC	1 cut(s)	226
BstMAI	GTCTC	1 cut(s)	312
BstMBI	GATC	1 cut(s)	223
BstMWI	GCNNNNNNNGC	5 cut(s)	45, 122, 131, 300, 382
BstNI	CCWGG	1 cut(s)	52
BstSCI	CCNGG	2 cut(s)	50, 380
BstUI	CGCG	1 cut(s)	378
BstV1I	GCAGC	4 cut(s)	133, 137, 199, 221
BstX2I	RGATCY	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	223
Bsu36I	CCTNAGG	1 cut(s)	332
BsuRI	GGCC	1 cut(s)	385
BtsCI	GGATG	2 cut(s)	70, 523
BtsIMutI	CAGTG	1 cut(s)	40
Cac8I	GCNNGC	1 cut(s)	378
CfoI	GCGC	3 cut(s)	378, 380, 470
Cfr13I	GGNCC	1 cut(s)	383
Csp6I	GTAC	3 cut(s)	5, 462, 506
CviJI	RGCY	9 cut(s)	48, 97, 134, 146, 212, 284, 289, 337, 385
CviKI_1	RGCY	9 cut(s)	48, 97, 134, 146, 212, 284, 289, 337, 385
CviQI	GTAC	3 cut(s)	5, 462, 506
DdeI	CTNAG	3 cut(s)	60, 278, 332
DpnI	GATC	1 cut(s)	225
DpnII	GATC	1 cut(s)	223
DraI	TTTAAA	1 cut(s)	441
Eam1104I	CTCTTC	2 cut(s)	114, 425
EarI	CTCTTC	2 cut(s)	114, 425
Eco24I	GRGCYC	1 cut(s)	50
Eco81I	CCTNAGG	1 cut(s)	332
EcoRI	GAATTC	1 cut(s)	349
EcoRII	CCWGG	1 cut(s)	50
EcoT38I	GRGCYC	1 cut(s)	50
FaiI	YATR	1 cut(s)	357
FaqI	GGGAC	2 cut(s)	115, 438
Fnu4HI	GCNGC	4 cut(s)	126, 147, 210, 213
FokI	GGATG	2 cut(s)	57, 530
FriOI	GRGCYC	1 cut(s)	50
Fsp4HI	GCNGC	4 cut(s)	126, 147, 210, 213
FspBI	CTAG	2 cut(s)	216, 465
GlaI	GCGC	3 cut(s)	377, 379, 469
GluI	GCNGC	4 cut(s)	126, 147, 210, 213
GsuI	CTGGAG	1 cut(s)	229
HaeII	RGCGCY	1 cut(s)	471
HaeIII	GGCC	1 cut(s)	385
HapII	CCGG	1 cut(s)	381
HhaI	GCGC	3 cut(s)	378, 380, 470
Hin6I	GCGC	3 cut(s)	376, 378, 468
HinP1I	GCGC	3 cut(s)	376, 378, 468
HindIII	AAGCTT	1 cut(s)	287
HinfI	GANTC	3 cut(s)	64, 151, 395
HpaII	CCGG	1 cut(s)	381
Hpy166II	GTNNAC	1 cut(s)	508
Hpy188I	TCNGA	5 cut(s)	23, 61, 156, 281, 394
Hpy8I	GTNNAC	1 cut(s)	508
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	4 cut(s)	264, 327, 445, 494
HpyCH4III	ACNGT	1 cut(s)	512
HpyCH4IV	ACGT	1 cut(s)	388
HpyCH4V	TGCA	7 cut(s)	116, 209, 272, 303, 529, 548, 553
HpyF10VI	GCNNNNNNNGC	5 cut(s)	45, 122, 131, 300, 382
HpyF3I	CTNAG	3 cut(s)	60, 278, 332
HpySE526I	ACGT	1 cut(s)	388
HspAI	GCGC	3 cut(s)	376, 378, 468
Kzo9I	GATC	1 cut(s)	223
LmnI	GCTCC	1 cut(s)	53
Lsp1109I	GCAGC	4 cut(s)	133, 137, 199, 221
MaeI	CTAG	2 cut(s)	216, 465
MaeII	ACGT	1 cut(s)	388
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	1 cut(s)	225
MboI	GATC	1 cut(s)	223
MboII	GAAGA	4 cut(s)	131, 249, 252, 442
MflI	RGATCY	1 cut(s)	223
MhlI	GDGCHC	1 cut(s)	50
MluCI	AATT	5 cut(s)	204, 349, 400, 476, 580
MseI	TTAA	2 cut(s)	440, 583
MspA1I	CMGCKG	1 cut(s)	212
MspI	CCGG	1 cut(s)	381
MspR9I	CCNGG	2 cut(s)	52, 382
MvaI	CCWGG	1 cut(s)	52
MvnI	CGCG	1 cut(s)	378
MwoI	GCNNNNNNNGC	5 cut(s)	45, 122, 131, 300, 382
NciI	CCSGG	1 cut(s)	382
NdeII	GATC	1 cut(s)	223
NlaIV	GGNNCC	2 cut(s)	49, 225
NmuCI	GTSAC	1 cut(s)	190
NspV	TTCGAA	1 cut(s)	398
PauI	GCGCGC	1 cut(s)	376
PfeI	GAWTC	3 cut(s)	64, 151, 395
PkrI	GCNGC	4 cut(s)	127, 148, 211, 214
Psp6I	CCWGG	1 cut(s)	50
PspGI	CCWGG	1 cut(s)	50
PspN4I	GGNNCC	2 cut(s)	49, 225
PspPI	GGNCC	1 cut(s)	383
PsuI	RGATCY	1 cut(s)	223
PteI	GCGCGC	1 cut(s)	376
PvuII	CAGCTG	1 cut(s)	212
RsaI	GTAC	3 cut(s)	6, 463, 507
RsaNI	GTAC	3 cut(s)	5, 462, 506
SaqAI	TTAA	2 cut(s)	440, 583
SatI	GCNGC	4 cut(s)	126, 147, 210, 213
Sau3AI	GATC	1 cut(s)	223
Sau96I	GGNCC	1 cut(s)	383
ScaI	AGTACT	1 cut(s)	463
ScrFI	CCNGG	2 cut(s)	52, 382
SduI	GDGCHC	1 cut(s)	50
SetI	ASST	4 cut(s)	28, 214, 291, 391
SfuI	TTCGAA	1 cut(s)	398
Sse9I	AATT	5 cut(s)	204, 349, 400, 476, 580
SspMI	CTAG	2 cut(s)	216, 465
StyD4I	CCNGG	2 cut(s)	50, 380
TaaI	ACNGT	1 cut(s)	512
TaiI	ACGT	1 cut(s)	391
TaqI	TCGA	3 cut(s)	166, 339, 398
TasI	AATT	5 cut(s)	204, 349, 400, 476, 580
TatI	WGTACW	2 cut(s)	461, 505
TfiI	GAWTC	3 cut(s)	64, 151, 395
Tru1I	TTAA	2 cut(s)	440, 583
Tru9I	TTAA	2 cut(s)	440, 583
TscAI	CASTG	1 cut(s)	47
TseFI	GTSAC	1 cut(s)	190
TseI	GCWGC	4 cut(s)	125, 146, 209, 212
Tsp45I	GTSAC	1 cut(s)	190
TspDTI	ATGAA	1 cut(s)	216
TspGWI	ACGGA	1 cut(s)	512
TspRI	CASTG	1 cut(s)	47
XapI	RAATTY	1 cut(s)	349
XspI	CTAG	2 cut(s)	216, 465
ZrmI	AGTACT	1 cut(s)	463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.