Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0003109

Physical Location & Seq

Genomic Coordinates Forward (+)

20850138 .. 20851347

Gene Structure 1210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G243600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGTGCAATCAAAGAAGTTCAGAGGTGTCAGGCAGCGTCACTGGGGATCTTGGGTCTCAGAAATTCGCCACCCCTTACTGAAGAGAAGGGTGTGGTTAGGCACATTTGAGACAGCTGAGGAGGCAGCCCGAGCCTACGATGAAGCAGCTGTTTTGATGAGTGGACGAAATGCCAAAACCAATTTCCCAATTTCTACCACTCAAACTAATACTAATACTGCTACTGCTGCTGCCGCCGCCATGGCCGTCGGATCAGACCCCAGAGGTAGTTCGAGCGACTTGGACCATTCGCTATCCGAGCCGAAGGGTTTATCAGAAATCTTACATGCCAAGCTCAGGAAATGCAGCAACCTTCCATCTCCATCCATGACCTGCTTGAGGCTCGACAATGAAAGCTCTCACATTGGAGTCTGGCAAAAGCGAGCAGGTCAACGCTCTGATAATTCCAACTGGGTCATGACTGTTCAGCTTGGCAAGAAGAAGAACAGTAATAACACTAACGCTGCTGATGATCATGGCCAAAGTATTTCATCATCATCACCGTTGATAATGTCGACTTCTGAGTCATCAGCGTCAACGTCATCAGCGAGGGCGCCGGAACTCATATCCGAGATGGATGAAGAAGAGAAAATTGCACTGCAGATGATAGAGGAGCTGCTTAACAGAAATTGTCCAAGTCCTAGTAATTCTTCATTTGGCATTCAACCAGGGGAGGAAAGCTTTTATTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

244

Amino Acids

26.57

Weight (kDa)

7.02

Isoelectric Point (pI)

63.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15360 AT1G15360
fragaria_vesca	FvH4_1g03190 FvH4_6g29930
malus_domestica	MD02G1030900.v1.1 MD15G1172600.v1.1 MD17G1209000.v1.1
prunus_persica	Prupe.3G084600_v2.0.a1 Prupe.7G243600_v2.0.a1
pyrus_communis	pycom15g15430
rosa_chinensis	RchiOBHm_Chr2g0088321 RchiOBHm_Chr2g0135921 RchiOBHm_Chr7g0230931
rosa_laevigata	RLG00000015943 RLG00000019490
rosa_multiflora	Rmu_sc0000483.1_g000022 Rmu_sc0004235.1_g000029 Rmu_sc0004243.1_g000002
rosa_roxburghii	Rroxscaffold_2G00108770 Rroxscaffold_2G00152750 Rroxscaffold_3G00229670
rosa_rugosa	Rorug01G0482900 Rorug02G0326900 Rorug07G0263300 Rorug07G0263400
rosa_samantha	Rh2AG378500 Rh2BG037200 Rh2BG385100 Rh2CG038300 Rh2CG364200 Rh2DG401400 Rh7AG416500 Rh7CG435700 Rh7DG410800
rosa_wichuraiana	Rw2G003000 Rw2G030840 Rw7G034490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	562
Acc36I	ACCTGC	2 cut(s)	380, 416
AccB1I	GGYRCC	1 cut(s)	592
AccI	GTMKAC	1 cut(s)	554
AciI	CCGC	2 cut(s)	234, 237
AclWI	GGATC	2 cut(s)	55, 259
AcoI	YGGCCR	2 cut(s)	243, 517
AcsI	RAATTY	1 cut(s)	63
AcuI	CTGAAG	1 cut(s)	101
AcyI	GRCGYC	1 cut(s)	593
AfiI	CCNNNNNNNGG	2 cut(s)	336, 378
AgsI	TTSAA	1 cut(s)	704
AjnI	CCWGG	1 cut(s)	706
AjuI	GAANNNNNNNTTGG	2 cut(s)	167, 199
AluBI	AGCT	7 cut(s)	116, 149, 334, 396, 469, 655, 720
AluI	AGCT	7 cut(s)	116, 149, 334, 396, 469, 655, 720
Alw26I	GTCTC	2 cut(s)	61, 104
AlwI	GGATC	2 cut(s)	55, 259
Ama87I	CYCGRG	1 cut(s)	129
AoxI	GGCC	2 cut(s)	243, 517
ApeKI	GCWGC	8 cut(s)	34, 125, 146, 227, 230, 345, 503, 655
ApoI	RAATTY	1 cut(s)	63
AspLEI	GCGC	1 cut(s)	595
AspS9I	GGNCC	1 cut(s)	283
AsuHPI	GGTGA	1 cut(s)	531
AvaI	CYCGRG	1 cut(s)	129
AvaII	GGWCC	1 cut(s)	283
BalI	TGGCCA	1 cut(s)	519
BanI	GGYRCC	1 cut(s)	592
BbvCI	CCTCAGC	1 cut(s)	117
BbvI	GCAGC	8 cut(s)	46, 137, 158, 214, 217, 357, 490, 642
BccI	CCATC	3 cut(s)	364, 370, 607
BceAI	ACGGC	1 cut(s)	230
BciT130I	CCWGG	1 cut(s)	708
BclI	TGATCA	1 cut(s)	511
BcoDI	GTCTC	2 cut(s)	61, 104
BfaI	CTAG	1 cut(s)	681
BfmI	CTRYAG	1 cut(s)	638
BfoI	RGCGCY	1 cut(s)	596
BfuAI	ACCTGC	2 cut(s)	380, 416
BglI	GCCNNNNNGGC	1 cut(s)	242
Bme1390I	CCNGG	1 cut(s)	708
Bme18I	GGWCC	1 cut(s)	283
BmeT110I	CYCGRG	1 cut(s)	129
BmgT120I	GGNCC	1 cut(s)	283
BmiI	GGNNCC	1 cut(s)	594
BmrFI	CCNGG	1 cut(s)	708
BmrI	ACTGGG	2 cut(s)	52, 460
BmuI	ACTGGG	2 cut(s)	52, 460
Bpu10I	CCTNAGC	2 cut(s)	117, 335
BpuEI	CTTGAG	1 cut(s)	397
BsaHI	GRCGYC	1 cut(s)	593
BsaI	GGTCTC	1 cut(s)	61
BsaJI	CCNNGG	2 cut(s)	240, 707
Bsc4I	CCNNNNNNNGG	2 cut(s)	336, 378
Bse1I	ACTGG	2 cut(s)	47, 455
BseBI	CCWGG	1 cut(s)	708
BseDI	CCNNGG	2 cut(s)	240, 707
BseGI	GGATG	2 cut(s)	362, 622
BseLI	CCNNNNNNNGG	2 cut(s)	336, 378
BseMII	CTCAG	4 cut(s)	72, 108, 349, 552
BseNI	ACTGG	2 cut(s)	47, 455
BseRI	GAGGAG	2 cut(s)	134, 665
BseXI	GCAGC	8 cut(s)	46, 137, 158, 214, 217, 357, 490, 642
BshFI	GGCC	2 cut(s)	245, 519
BshNI	GGYRCC	1 cut(s)	592
BsiHKCI	CYCGRG	1 cut(s)	129
BsiSI	CCGG	1 cut(s)	596
BslI	CCNNNNNNNGG	2 cut(s)	336, 378
BsmAI	GTCTC	2 cut(s)	61, 104
BsmI	GAATGC	1 cut(s)	699
BsnI	GGCC	2 cut(s)	245, 519
Bso31I	GGTCTC	1 cut(s)	61
BsoBI	CYCGRG	1 cut(s)	129
Bsp143I	GATC	3 cut(s)	47, 251, 511
Bsp19I	CCATGG	1 cut(s)	240
BspACI	CCGC	2 cut(s)	234, 237
BspANI	GGCC	2 cut(s)	245, 519
BspCNI	CTCAG	4 cut(s)	71, 109, 348, 553
BspHI	TCATGA	1 cut(s)	456
BspLI	GGNNCC	1 cut(s)	594
BspMAI	CTGCAG	1 cut(s)	642
BspMI	ACCTGC	2 cut(s)	380, 416
BspPI	GGATC	2 cut(s)	55, 259
BspT107I	GGYRCC	1 cut(s)	592
BspTNI	GGTCTC	1 cut(s)	61
BsrI	ACTGG	2 cut(s)	47, 455
BssECI	CCNNGG	2 cut(s)	240, 707
BssMI	GATC	3 cut(s)	47, 251, 511
BssNI	GRCGYC	1 cut(s)	593
BssT1I	CCWWGG	1 cut(s)	240
Bst2UI	CCWGG	1 cut(s)	708
Bst4CI	ACNGT	3 cut(s)	463, 488, 543
Bst6I	CTCTTC	2 cut(s)	77, 618
BstACI	GRCGYC	1 cut(s)	593
BstC8I	GCNNGC	1 cut(s)	423
BstDEI	CTNAG	4 cut(s)	58, 117, 335, 561
BstDSI	CCRYGG	1 cut(s)	240
BstENI	CCTNNNNNAGG	1 cut(s)	376
BstF5I	GGATG	2 cut(s)	362, 622
BstH2I	RGCGCY	1 cut(s)	596
BstHHI	GCGC	1 cut(s)	595
BstKTI	GATC	3 cut(s)	50, 254, 514
BstMAI	GTCTC	2 cut(s)	61, 104
BstMBI	GATC	3 cut(s)	47, 251, 511
BstMWI	GCNNNNNNNGC	7 cut(s)	122, 131, 227, 233, 236, 242, 298
BstNI	CCWGG	1 cut(s)	708
BstNSI	RCATGY	1 cut(s)	329
BstSCI	CCNGG	1 cut(s)	706
BstSFI	CTRYAG	1 cut(s)	638
BstV1I	GCAGC	8 cut(s)	46, 137, 158, 214, 217, 357, 490, 642
BstX2I	RGATCY	1 cut(s)	47
BstYI	RGATCY	1 cut(s)	47
BsuRI	GGCC	2 cut(s)	245, 519
BtgI	CCRYGG	1 cut(s)	240
BtsCI	GGATG	2 cut(s)	362, 622
BtsI	GCAGTG	1 cut(s)	635
BtsIMutI	CAGTG	2 cut(s)	40, 635
BveI	ACCTGC	2 cut(s)	380, 416
Cac8I	GCNNGC	1 cut(s)	423
CciI	TCATGA	1 cut(s)	456
CfoI	GCGC	1 cut(s)	595
Cfr13I	GGNCC	1 cut(s)	283
CseI	GACGC	2 cut(s)	26, 561
CviAII	CATG	5 cut(s)	241, 326, 367, 457, 515
DdeI	CTNAG	4 cut(s)	58, 117, 335, 561
DinI	GGCGCC	1 cut(s)	594
DpnI	GATC	3 cut(s)	49, 253, 513
DpnII	GATC	3 cut(s)	47, 251, 511
DrdI	GACNNNNNNGTC	1 cut(s)	562
DseDI	GACNNNNNNGTC	1 cut(s)	562
EaeI	YGGCCR	2 cut(s)	243, 517
Eam1104I	CTCTTC	2 cut(s)	77, 618
EarI	CTCTTC	2 cut(s)	77, 618
Eco130I	CCWWGG	1 cut(s)	240
Eco31I	GGTCTC	1 cut(s)	61
Eco47I	GGWCC	1 cut(s)	283
Eco57I	CTGAAG	1 cut(s)	101
Eco88I	CYCGRG	1 cut(s)	129
EcoNI	CCTNNNNNAGG	1 cut(s)	376
EcoRII	CCWGG	1 cut(s)	706
EcoT14I	CCWWGG	1 cut(s)	240
EgeI	GGCGCC	1 cut(s)	594
EheI	GGCGCC	1 cut(s)	594
ErhI	CCWWGG	1 cut(s)	240
FaeI	CATG	5 cut(s)	244, 329, 370, 460, 518
FaiI	YATR	6 cut(s)	242, 327, 368, 458, 516, 605
FatI	CATG	5 cut(s)	240, 325, 366, 456, 514
FbaI	TGATCA	1 cut(s)	511
FblI	GTMKAC	1 cut(s)	554
FokI	GGATG	2 cut(s)	349, 629
FspBI	CTAG	1 cut(s)	681
GlaI	GCGC	1 cut(s)	594
HaeII	RGCGCY	1 cut(s)	596
HaeIII	GGCC	2 cut(s)	245, 519
HapII	CCGG	1 cut(s)	596
HgaI	GACGC	2 cut(s)	26, 561
HhaI	GCGC	1 cut(s)	595
Hin1I	GRCGYC	1 cut(s)	593
Hin1II	CATG	5 cut(s)	244, 329, 370, 460, 518
Hin6I	GCGC	1 cut(s)	593
HinP1I	GCGC	1 cut(s)	593
HincII	GTYRAC	3 cut(s)	431, 555, 576
HindII	GTYRAC	3 cut(s)	431, 555, 576
HindIII	AAGCTT	1 cut(s)	718
HinfI	GANTC	2 cut(s)	408, 563
HpaII	CCGG	1 cut(s)	596
HphI	GGTGA	1 cut(s)	531
Hpy166II	GTNNAC	4 cut(s)	164, 431, 555, 576
Hpy188I	TCNGA	9 cut(s)	23, 61, 251, 256, 298, 316, 439, 562, 610
Hpy188III	TCNNGA	2 cut(s)	337, 457
Hpy8I	GTNNAC	4 cut(s)	164, 431, 555, 576
Hpy99I	CGWCG	1 cut(s)	251
HpyAV	CCTTC	3 cut(s)	81, 298, 362
HpyCH4III	ACNGT	3 cut(s)	463, 488, 543
HpyCH4IV	ACGT	1 cut(s)	578
HpyCH4V	TGCA	4 cut(s)	7, 345, 635, 640
HpyF10VI	GCNNNNNNNGC	7 cut(s)	122, 131, 227, 233, 236, 242, 298
HpyF3I	CTNAG	4 cut(s)	58, 117, 335, 561
HpySE526I	ACGT	1 cut(s)	578
Hsp92I	GRCGYC	1 cut(s)	593
Hsp92II	CATG	5 cut(s)	244, 329, 370, 460, 518
HspAI	GCGC	1 cut(s)	593
KasI	GGCGCC	1 cut(s)	592
Ksp22I	TGATCA	1 cut(s)	511
Kzo9I	GATC	3 cut(s)	47, 251, 511
LmnI	GCTCC	1 cut(s)	652
Lsp1109I	GCAGC	8 cut(s)	46, 137, 158, 214, 217, 357, 490, 642
MaeI	CTAG	1 cut(s)	681
MaeII	ACGT	1 cut(s)	578
MaeIII	GTNAC	1 cut(s)	38
MalI	GATC	3 cut(s)	49, 253, 513
MboI	GATC	3 cut(s)	47, 251, 511
MboII	GAAGA	6 cut(s)	94, 490, 493, 632, 635, 681
MflI	RGATCY	1 cut(s)	47
MlsI	TGGCCA	1 cut(s)	519
MluCI	AATT	7 cut(s)	63, 181, 189, 442, 630, 667, 685
MluNI	TGGCCA	1 cut(s)	519
Mly113I	GGCGCC	1 cut(s)	593
MlyI	GAGTC	2 cut(s)	417, 572
MmeI	TCCRAC	2 cut(s)	229, 471
MnlI	CCTC	8 cut(s)	17, 112, 115, 257, 372, 582, 643, 706
Mox20I	TGGCCA	1 cut(s)	519
MscI	TGGCCA	1 cut(s)	519
MseI	TTAA	1 cut(s)	660
Msp20I	TGGCCA	1 cut(s)	519
MspA1I	CMGCKG	2 cut(s)	116, 149
MspI	CCGG	1 cut(s)	596
MspR9I	CCNGG	1 cut(s)	708
Mva1269I	GAATGC	1 cut(s)	699
MvaI	CCWGG	1 cut(s)	708
MwoI	GCNNNNNNNGC	7 cut(s)	122, 131, 227, 233, 236, 242, 298
NarI	GGCGCC	1 cut(s)	593
NcoI	CCATGG	1 cut(s)	240
NdeII	GATC	3 cut(s)	47, 251, 511
NlaIII	CATG	5 cut(s)	244, 329, 370, 460, 518
NlaIV	GGNNCC	1 cut(s)	594
NmuCI	GTSAC	1 cut(s)	38
NspI	RCATGY	1 cut(s)	329
PagI	TCATGA	1 cut(s)	456
PcsI	WCGNNNNNNNCGW	1 cut(s)	584
PctI	GAATGC	1 cut(s)	699
PleI	GAGTC	2 cut(s)	416, 571
PluTI	GGCGCC	1 cut(s)	596
PpsI	GAGTC	2 cut(s)	416, 571
Psp6I	CCWGG	1 cut(s)	706
PspGI	CCWGG	1 cut(s)	706
PspN4I	GGNNCC	1 cut(s)	594
PspPI	GGNCC	1 cut(s)	283
PstI	CTGCAG	1 cut(s)	642
PsuI	RGATCY	1 cut(s)	47
PvuII	CAGCTG	2 cut(s)	116, 149
SalI	GTCGAC	1 cut(s)	553
SaqAI	TTAA	1 cut(s)	660
Sau3AI	GATC	3 cut(s)	47, 251, 511
Sau96I	GGNCC	1 cut(s)	283
SchI	GAGTC	2 cut(s)	417, 572
ScrFI	CCNGG	1 cut(s)	708
SfcI	CTRYAG	1 cut(s)	638
SfoI	GGCGCC	1 cut(s)	594
SinI	GGWCC	1 cut(s)	283
SmlI	CTYRAG	1 cut(s)	376
SmoI	CTYRAG	1 cut(s)	376
Sse9I	AATT	7 cut(s)	63, 181, 189, 442, 630, 667, 685
SsiI	CCGC	2 cut(s)	234, 237
SspDI	GGCGCC	1 cut(s)	592
SspMI	CTAG	1 cut(s)	681
StyD4I	CCNGG	1 cut(s)	706
StyI	CCWWGG	1 cut(s)	240
TaaI	ACNGT	3 cut(s)	463, 488, 543
TaiI	ACGT	1 cut(s)	581
TaqI	TCGA	3 cut(s)	272, 384, 554
TasI	AATT	7 cut(s)	63, 181, 189, 442, 630, 667, 685
TauI	GCSGC	2 cut(s)	236, 239
Tru1I	TTAA	1 cut(s)	660
Tru9I	TTAA	1 cut(s)	660
TscAI	CASTG	2 cut(s)	47, 642
TseFI	GTSAC	1 cut(s)	38
TseI	GCWGC	8 cut(s)	34, 125, 146, 227, 230, 345, 503, 655
Tsp45I	GTSAC	1 cut(s)	38
TspDTI	ATGAA	5 cut(s)	156, 405, 519, 633, 681
TspRI	CASTG	2 cut(s)	47, 642
VpaK11BI	GGWCC	1 cut(s)	283
XagI	CCTNNNNNAGG	1 cut(s)	376
XapI	RAATTY	1 cut(s)	63
XceI	RCATGY	1 cut(s)	329
XmiI	GTMKAC	1 cut(s)	554
XspI	CTAG	1 cut(s)	681

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.