Rh4CG416400

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0017013
Physical Location & Seq
Forward (+)
66164085 .. 66164655
571 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG416400.1

Sequence Viewer

Length: 471 bp
ATGTCCAGTTATGGTAAGCTGGAGGTGGCTATTGAGATCACGGTTGGTGCTTACGAGTTCTATGATATGGTGGTAAACAGACCACACCATGTACCCAACAACAAACTTGATGGTGTTGCAACTAATCAAGCTGACTCGTCCTCATCCGCAAAAGTCGGTTCTATCTCCTCCTGGAAGTATTTCCAAGATGGGAAAGCTAAAGTATGCCAGGCGATGATTGAAGCCCTGGACAGCAAGAAACATTCAACGACTTGGAAAATCGTTGAAGGAGAACTTCTTGATCATTACAAGAGCTTCAAGTTCATCCTGCAAATTATTACCACTCCAAACCCGAAAGCAACGGTGCATATGATTAATTTGGAGTATGAGAAGATGCATGACGATGTTGCAGACCCATATTTTATGCTCCAGACGGTAACTGATAACATCAAAGACATTGACGCTCATCTACTCACTCAGAGCCGGACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

156

Amino Acids

17.63

Weight (kDa)

5.94

Isoelectric Point (pI)

42.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 4 - 152 2.2e-34 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 147
AfaI GTAC 1 cut(s) 93
AgsI TTSAA 4 cut(s) 221, 246, 266, 298
AjnI CCWGG 3 cut(s) 170, 207, 225
AluBI AGCT 4 cut(s) 19, 131, 197, 294
AluI AGCT 4 cut(s) 19, 131, 197, 294
AseI ATTAAT 1 cut(s) 354
Asp700I GAANNNNTTC 1 cut(s) 179
AspS9I GGNCC 1 cut(s) 465
AvaII GGWCC 1 cut(s) 465
BccI CCATC 2 cut(s) 104, 182
BciT130I CCWGG 3 cut(s) 172, 209, 227
BclI TGATCA 1 cut(s) 280
Bme1390I CCNGG 3 cut(s) 172, 209, 227
Bme18I GGWCC 1 cut(s) 465
BmgT120I GGNCC 1 cut(s) 465
BmrFI CCNGG 3 cut(s) 172, 209, 227
BmsI GCATC 1 cut(s) 363
BpmI CTGGAG 2 cut(s) 41, 392
BsaJI CCNNGG 1 cut(s) 225
Bse1I ACTGG 1 cut(s) 6
BseBI CCWGG 3 cut(s) 172, 209, 227
BseDI CCNNGG 1 cut(s) 225
BseGI GGATG 2 cut(s) 143, 303
BseMII CTCAG 1 cut(s) 470
BseNI ACTGG 1 cut(s) 6
BseRI GAGGAG 1 cut(s) 157
BsiSI CCGG 1 cut(s) 463
Bsp143I GATC 2 cut(s) 36, 280
BspACI CCGC 1 cut(s) 147
BspCNI CTCAG 1 cut(s) 469
BsrI ACTGG 1 cut(s) 6
BssECI CCNNGG 1 cut(s) 225
BssMI GATC 2 cut(s) 36, 280
Bst2UI CCWGG 3 cut(s) 172, 209, 227
Bst4CI ACNGT 3 cut(s) 43, 343, 415
BstDEI CTNAG 1 cut(s) 456
BstF5I GGATG 2 cut(s) 143, 303
BstKTI GATC 2 cut(s) 39, 283
BstMBI GATC 2 cut(s) 36, 280
BstNI CCWGG 3 cut(s) 172, 209, 227
BstSCI CCNGG 3 cut(s) 170, 207, 225
BtgZI GCGATG 1 cut(s) 227
BtsCI GGATG 2 cut(s) 143, 303
Cfr13I GGNCC 1 cut(s) 465
CseI GACGC 1 cut(s) 449
Csp6I GTAC 1 cut(s) 92
CviAII CATG 2 cut(s) 89, 377
CviJI RGCY 7 cut(s) 19, 29, 131, 197, 224, 294, 462
CviKI_1 RGCY 7 cut(s) 19, 29, 131, 197, 224, 294, 462
CviQI GTAC 1 cut(s) 92
DdeI CTNAG 1 cut(s) 456
DpnI GATC 2 cut(s) 38, 282
DpnII GATC 2 cut(s) 36, 280
Eco47I GGWCC 1 cut(s) 465
EcoRII CCWGG 3 cut(s) 170, 207, 225
EcoT22I ATGCAT 1 cut(s) 378
FaeI CATG 2 cut(s) 92, 380
FalI AAGNNNNNCTT 2 cut(s) 258, 290
FatI CATG 2 cut(s) 88, 376
FauNDI CATATG 1 cut(s) 348
FbaI TGATCA 1 cut(s) 280
FokI GGATG 2 cut(s) 130, 290
GsuI CTGGAG 2 cut(s) 41, 392
HapII CCGG 1 cut(s) 463
HgaI GACGC 1 cut(s) 449
Hin1II CATG 2 cut(s) 92, 380
HinfI GANTC 1 cut(s) 134
HpaII CCGG 1 cut(s) 463
Hpy166II GTNNAC 1 cut(s) 76
Hpy188I TCNGA 1 cut(s) 459
Hpy188III TCNNGA 2 cut(s) 278, 409
Hpy8I GTNNAC 1 cut(s) 76
HpyAV CCTTC 1 cut(s) 260
HpyCH4III ACNGT 3 cut(s) 43, 343, 415
HpyCH4V TGCA 5 cut(s) 119, 310, 346, 376, 389
HpyF3I CTNAG 1 cut(s) 456
Hsp92II CATG 2 cut(s) 92, 380
Ksp22I TGATCA 1 cut(s) 280
Kzo9I GATC 2 cut(s) 36, 280
LmnI GCTCC 1 cut(s) 411
LweI GCATC 1 cut(s) 363
MaeIII GTNAC 1 cut(s) 415
MalI GATC 2 cut(s) 38, 282
MboI GATC 2 cut(s) 36, 280
MboII GAAGA 1 cut(s) 382
MluCI AATT 2 cut(s) 312, 355
MlyI GAGTC 1 cut(s) 128
MnlI CCTC 3 cut(s) 16, 151, 178
Mph1103I ATGCAT 1 cut(s) 378
MroXI GAANNNNTTC 1 cut(s) 179
MseI TTAA 1 cut(s) 354
MslI CAYNNNNRTG 1 cut(s) 381
MspI CCGG 1 cut(s) 463
MspR9I CCNGG 3 cut(s) 172, 209, 227
MvaI CCWGG 3 cut(s) 172, 209, 227
NdeI CATATG 1 cut(s) 348
NdeII GATC 2 cut(s) 36, 280
NlaIII CATG 2 cut(s) 92, 380
NsiI ATGCAT 1 cut(s) 378
PdmI GAANNNNTTC 1 cut(s) 179
PfoI TCCNGGA 1 cut(s) 170
PleI GAGTC 1 cut(s) 128
PpsI GAGTC 1 cut(s) 128
PshBI ATTAAT 1 cut(s) 354
Psp6I CCWGG 3 cut(s) 170, 207, 225
PspGI CCWGG 3 cut(s) 170, 207, 225
PspPI GGNCC 1 cut(s) 465
RsaI GTAC 1 cut(s) 93
RsaNI GTAC 1 cut(s) 92
RseI CAYNNNNRTG 1 cut(s) 381
SaqAI TTAA 1 cut(s) 354
Sau3AI GATC 2 cut(s) 36, 280
Sau96I GGNCC 1 cut(s) 465
SchI GAGTC 1 cut(s) 128
ScrFI CCNGG 3 cut(s) 172, 209, 227
SetI ASST 6 cut(s) 21, 27, 133, 199, 296, 470
SfaNI GCATC 1 cut(s) 363
SinI GGWCC 1 cut(s) 465
SmiMI CAYNNNNRTG 1 cut(s) 381
Sse9I AATT 2 cut(s) 312, 355
SsiI CCGC 1 cut(s) 147
StyD4I CCNGG 3 cut(s) 170, 207, 225
TaaI ACNGT 3 cut(s) 43, 343, 415
TasI AATT 2 cut(s) 312, 355
Tru1I TTAA 1 cut(s) 354
Tru9I TTAA 1 cut(s) 354
TspDTI ATGAA 1 cut(s) 292
VpaK11BI GGWCC 1 cut(s) 465
VspI ATTAAT 1 cut(s) 354
XmnI GAANNNNTTC 1 cut(s) 179
Zsp2I ATGCAT 1 cut(s) 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.